Protein–RNA interactions for Protein: O00555

CACNA1A, Voltage-dependent P/Q-type calcium channel subunit alpha-1A, humanhuman

Predictions only

Length 2,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1AO00555 BLOC1S1-204ENST00000549147 1229 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CACNA1AO00555 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CACNA1AO00555 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.63■□□□□ 0.41
CACNA1AO00555 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC17.63■□□□□ 0.41
CACNA1AO00555 CREM-210ENST00000374721 2020 ntTSL 5 BASIC17.63■□□□□ 0.41
CACNA1AO00555 WNT8A-204ENST00000506684 1543 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CACNA1AO00555 AC006974.1-201ENST00000637928 1501 ntTSL 5 BASIC17.63■□□□□ 0.41
CACNA1AO00555 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC17.63■□□□□ 0.41
CACNA1AO00555 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 ZNF517-202ENST00000525105 1383 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 SCAND1-203ENST00000615116 1371 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CACNA1AO00555 FGFBP2-201ENST00000259989 1168 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 CD82-202ENST00000342935 967 ntTSL 5 BASIC17.62■□□□□ 0.41
CACNA1AO00555 LINC01128-208ENST00000608189 824 ntTSL 5 BASIC17.62■□□□□ 0.41
CACNA1AO00555 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 CFC1-202ENST00000615342 1554 ntTSL 5 BASIC17.62■□□□□ 0.41
CACNA1AO00555 P2RY6-209ENST00000540342 1611 ntAPPRIS P1 TSL 2 BASIC17.62■□□□□ 0.41
CACNA1AO00555 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 AL136311.1-206ENST00000416069 899 ntTSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC17.62■□□□□ 0.41
CACNA1AO00555 CR383656.12-201ENST00000549567 513 ntBASIC17.62■□□□□ 0.41
CACNA1AO00555 LINC01481-203ENST00000549651 883 ntTSL 2 BASIC17.62■□□□□ 0.41
CACNA1AO00555 DNAJC8-201ENST00000263697 1759 ntAPPRIS P1 TSL 1 (best) BASIC17.62■□□□□ 0.41
CACNA1AO00555 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC17.62■□□□□ 0.41
CACNA1AO00555 CLDN14-202ENST00000399135 1752 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CACNA1AO00555 PRKN-202ENST00000366892 1505 ntTSL 5 BASIC17.61■□□□□ 0.41
CACNA1AO00555 STOM-202ENST00000347359 870 ntTSL 2 BASIC17.61■□□□□ 0.41
CACNA1AO00555 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CACNA1AO00555 KRT18P27-201ENST00000427733 1299 ntBASIC17.61■□□□□ 0.41
CACNA1AO00555 AC108751.1-201ENST00000490852 363 ntBASIC17.61■□□□□ 0.41
CACNA1AO00555 AP000344.2-201ENST00000512987 629 ntBASIC17.61■□□□□ 0.41
CACNA1AO00555 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC17.61■□□□□ 0.41
CACNA1AO00555 POLD4-211ENST00000539074 714 ntTSL 3 BASIC17.61■□□□□ 0.41
CACNA1AO00555 AC132872.3-201ENST00000620937 629 ntTSL 5 BASIC17.61■□□□□ 0.41
CACNA1AO00555 ASAH1-255ENST00000637638 699 ntTSL 2 BASIC17.61■□□□□ 0.41
CACNA1AO00555 SMYD2-201ENST00000366957 1671 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CACNA1AO00555 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CACNA1AO00555 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CACNA1AO00555 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC17.61■□□□□ 0.41
CACNA1AO00555 LAGE3P1-201ENST00000425356 484 ntBASIC17.61■□□□□ 0.41
CACNA1AO00555 NOP2-211ENST00000540228 668 ntTSL 2 BASIC17.61■□□□□ 0.41
CACNA1AO00555 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC17.61■□□□□ 0.41
CACNA1AO00555 FARSA-202ENST00000423140 1720 ntTSL 2 BASIC17.61■□□□□ 0.41
CACNA1AO00555 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC17.6■□□□□ 0.41
CACNA1AO00555 SIVA1-202ENST00000347067 550 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 MRPL20P1-201ENST00000400819 433 ntBASIC17.6■□□□□ 0.41
CACNA1AO00555 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC17.6■□□□□ 0.41
CACNA1AO00555 ABCD1P5-201ENST00000445663 754 ntBASIC17.6■□□□□ 0.41
CACNA1AO00555 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC17.6■□□□□ 0.41
CACNA1AO00555 KRT8P7-201ENST00000533003 1432 ntBASIC17.6■□□□□ 0.41
CACNA1AO00555 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC17.6■□□□□ 0.41
CACNA1AO00555 TSSC4-201ENST00000333256 1686 ntAPPRIS P3 TSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 AC026412.3-201ENST00000605200 1661 ntTSL 5 BASIC17.6■□□□□ 0.41
CACNA1AO00555 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 CHAC1-205ENST00000617961 1498 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.6■□□□□ 0.41
CACNA1AO00555 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 AP000442.1-201ENST00000533552 769 ntTSL 5 BASIC17.6■□□□□ 0.41
CACNA1AO00555 RPS29-206ENST00000557111 488 ntTSL 2 BASIC17.6■□□□□ 0.41
CACNA1AO00555 FAM227B-204ENST00000558594 1139 ntAPPRIS ALT2 TSL 5 BASIC17.6■□□□□ 0.41
CACNA1AO00555 TMEM25-205ENST00000411589 2442 ntAPPRIS ALT2 TSL 2 BASIC17.6■□□□□ 0.41
CACNA1AO00555 CDK4-202ENST00000312990 1650 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC17.6■□□□□ 0.41
CACNA1AO00555 SYTL1-201ENST00000318074 1900 ntTSL 2 BASIC17.6■□□□□ 0.41
CACNA1AO00555 ARRDC1-AS1-203ENST00000623970 2210 ntTSL 5 BASIC17.59■□□□□ 0.41
CACNA1AO00555 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CACNA1AO00555 RCN1P2-201ENST00000398357 915 ntBASIC17.59■□□□□ 0.41
CACNA1AO00555 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC17.59■□□□□ 0.41
CACNA1AO00555 AL513210.1-201ENST00000629608 234 ntBASIC17.59■□□□□ 0.41
CACNA1AO00555 ANO8-201ENST00000159087 4152 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CACNA1AO00555 ISCU-205ENST00000535729 1330 ntTSL 2 BASIC17.59■□□□□ 0.41
CACNA1AO00555 IRX4-202ENST00000505790 2538 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CACNA1AO00555 CLEC14A-201ENST00000342213 2267 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CACNA1AO00555 RGS3-232ENST00000620489 1503 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CACNA1AO00555 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC17.59■□□□□ 0.41
CACNA1AO00555 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC17.59■□□□□ 0.41
CACNA1AO00555 SMOX-204ENST00000346595 982 ntTSL 1 (best) BASIC17.59■□□□□ 0.41
CACNA1AO00555 MIR661-201ENST00000384842 89 ntBASIC17.59■□□□□ 0.41
CACNA1AO00555 IGKV4-1-201ENST00000390243 538 ntAPPRIS P1 BASIC17.59■□□□□ 0.41
CACNA1AO00555 AC104390.1-201ENST00000555663 520 ntBASIC17.59■□□□□ 0.41
CACNA1AO00555 DUT-210ENST00000559935 569 ntTSL 3 BASIC17.59■□□□□ 0.41
CACNA1AO00555 AC064836.3-201ENST00000607928 673 ntBASIC17.59■□□□□ 0.41
CACNA1AO00555 CECR7-204ENST00000609932 568 ntTSL 2 BASIC17.59■□□□□ 0.41
CACNA1AO00555 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC17.58■□□□□ 0.41
CACNA1AO00555 RBM43-202ENST00000409092 579 ntAPPRIS ALT2 TSL 2 BASIC17.58■□□□□ 0.41
CACNA1AO00555 RPL13P5-203ENST00000421824 845 ntTSL 3 BASIC17.58■□□□□ 0.41
CACNA1AO00555 OARD1-208ENST00000469104 704 ntTSL 2 BASIC17.58■□□□□ 0.41
CACNA1AO00555 AC093214.1-201ENST00000511688 1107 ntBASIC17.58■□□□□ 0.41
CACNA1AO00555 RNA5SP421-201ENST00000516864 134 ntBASIC17.58■□□□□ 0.41
CACNA1AO00555 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC17.58■□□□□ 0.41
CACNA1AO00555 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC17.58■□□□□ 0.41
CACNA1AO00555 RETN-203ENST00000629642 400 ntTSL 5 BASIC17.58■□□□□ 0.41
CACNA1AO00555 SOX1-201ENST00000330949 2842 ntAPPRIS P1 BASIC17.58■□□□□ 0.41
CACNA1AO00555 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.41
CACNA1AO00555 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC17.58■□□□□ 0.4
CACNA1AO00555 FUZ-201ENST00000313777 1675 ntAPPRIS P1 TSL 1 (best) BASIC17.58■□□□□ 0.4
CACNA1AO00555 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC17.58■□□□□ 0.4
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms