Protein–RNA interactions for Protein: O00337

SLC28A1, Sodium/nucleoside cotransporter 1, humanhuman

Predictions only

Length 649 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC28A1O00337 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC18.08■□□□□ 0.48
SLC28A1O00337 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 NDUFS6-202ENST00000469176 550 ntTSL 2 BASIC18.08■□□□□ 0.48
SLC28A1O00337 TESMIN-209ENST00000544963 1235 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 JPT2-204ENST00000561516 1065 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 CACTIN-201ENST00000221899 2797 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 SYTL1-208ENST00000543823 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 LINC00466-207ENST00000634725 1736 ntTSL 5 BASIC18.08■□□□□ 0.48
SLC28A1O00337 SLC39A7-201ENST00000374675 2153 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 C19orf48-202ENST00000391812 1666 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SLC28A1O00337 AC008764.1-201ENST00000409035 2567 ntAPPRIS P1 TSL 2 BASIC18.08■□□□□ 0.48
SLC28A1O00337 COBLL1-201ENST00000342193 4898 ntAPPRIS P3 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 SLC35B2-207ENST00000619636 2063 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 SLC12A4-201ENST00000316341 4765 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 TRIP4-201ENST00000261884 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 ATP6V1G2-205ENST00000303892 1588 ntAPPRIS P1 TSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 C5orf30-203ENST00000515669 1573 ntAPPRIS P1 TSL 3 BASIC18.08■□□□□ 0.48
SLC28A1O00337 PRELID3A-209ENST00000592149 2001 ntTSL 2 BASIC18.08■□□□□ 0.48
SLC28A1O00337 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC18.08■□□□□ 0.48
SLC28A1O00337 KRT81-202ENST00000615839 1505 ntAPPRIS ALT2 TSL 5 BASIC18.08■□□□□ 0.48
SLC28A1O00337 ANKS3-230ENST00000614075 2387 ntAPPRIS P1 TSL 5 BASIC18.08■□□□□ 0.48
SLC28A1O00337 KRT13-208ENST00000587544 1456 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 NUBP2-201ENST00000262302 1413 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 C19orf25-201ENST00000427685 1410 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 MUTYH-202ENST00000355498 1776 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 JAKMIP1-208ENST00000637373 1362 ntTSL 5 BASIC18.07■□□□□ 0.48
SLC28A1O00337 ASB7-203ENST00000558747 2133 ntTSL 5 BASIC18.07■□□□□ 0.48
SLC28A1O00337 TFCP2-205ENST00000549867 1727 ntTSL 5 BASIC18.07■□□□□ 0.48
SLC28A1O00337 AL031658.1-201ENST00000449519 2013 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 CD70-201ENST00000245903 913 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 HOXA9-202ENST00000396345 797 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 SPINK2-202ENST00000504762 659 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 ADGRD1-AS1-202ENST00000542980 1277 ntTSL 4 BASIC18.07■□□□□ 0.48
SLC28A1O00337 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC18.07■□□□□ 0.48
SLC28A1O00337 AL353593.2-202ENST00000602947 550 ntTSL 4 BASIC18.07■□□□□ 0.48
SLC28A1O00337 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 BEGAIN-202ENST00000443071 2744 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 TRIM61-201ENST00000329314 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 HLA-G-205ENST00000428701 1578 ntAPPRIS P2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 ACAA1-209ENST00000450296 1570 ntTSL 5 BASIC18.07■□□□□ 0.48
SLC28A1O00337 CARNS1-205ENST00000531040 2968 ntTSL 5 BASIC18.07■□□□□ 0.48
SLC28A1O00337 GPR83-202ENST00000539203 1909 ntTSL 5 BASIC18.07■□□□□ 0.48
SLC28A1O00337 LURAP1-201ENST00000371980 1854 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 APLP2-210ENST00000528499 2530 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 MLLT1-201ENST00000252674 4507 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 SPERT-202ENST00000378966 1842 ntAPPRIS ALT2 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 ABCC5-204ENST00000392579 1848 ntTSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 RIN1-205ENST00000530056 2122 ntTSL 2 BASIC18.07■□□□□ 0.48
SLC28A1O00337 PKN1-201ENST00000242783 3069 ntAPPRIS P1 TSL 1 (best) BASIC18.07■□□□□ 0.48
SLC28A1O00337 KRT16P1-201ENST00000399124 1418 ntBASIC18.06■□□□□ 0.48
SLC28A1O00337 CLN3-204ENST00000357857 1720 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 FOXD4L6-201ENST00000622588 2034 ntAPPRIS P1 BASIC18.06■□□□□ 0.48
SLC28A1O00337 GNAS-AS1-202ENST00000443966 2341 ntTSL 5 BASIC18.06■□□□□ 0.48
SLC28A1O00337 PRSS23-201ENST00000280258 4015 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 MATN4-203ENST00000372754 2200 ntAPPRIS ALT2 TSL 5 BASIC18.06■□□□□ 0.48
SLC28A1O00337 ZNF420-201ENST00000304239 1945 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 HOXD12-202ENST00000406506 1318 ntAPPRIS P1 TSL 3 BASIC18.06■□□□□ 0.48
SLC28A1O00337 RELL2-202ENST00000444782 2154 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 ZNF419-207ENST00000442920 1857 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 DNM1-211ENST00000627061 2724 ntTSL 5 BASIC18.06■□□□□ 0.48
SLC28A1O00337 AL162741.1-201ENST00000565563 1558 ntBASIC18.06■□□□□ 0.48
SLC28A1O00337 ATP5D-201ENST00000215375 997 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 TLCD1-202ENST00000394933 784 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 C7orf50-203ENST00000397100 1264 ntAPPRIS P2 TSL 3 BASIC18.06■□□□□ 0.48
SLC28A1O00337 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 NDUFAF3-204ENST00000451378 774 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 AC020922.2-201ENST00000596786 359 ntTSL 4 BASIC18.06■□□□□ 0.48
SLC28A1O00337 AL031985.4-201ENST00000642138 673 ntBASIC18.06■□□□□ 0.48
SLC28A1O00337 STMN3-202ENST00000540534 2351 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 TNFRSF1A-213ENST00000540022 1527 ntTSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 DAG1-220ENST00000539901 5665 ntAPPRIS P1 TSL 5 BASIC18.06■□□□□ 0.48
SLC28A1O00337 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC18.06■□□□□ 0.48
SLC28A1O00337 SSUH2-202ENST00000341795 1799 ntAPPRIS P3 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 TMEM25-203ENST00000354284 1456 ntTSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 HSPB6-201ENST00000004982 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 AK1-203ENST00000373176 2266 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 ANKRD10-201ENST00000267339 2495 ntAPPRIS P1 TSL 2 BASIC18.06■□□□□ 0.48
SLC28A1O00337 AC112777.1-201ENST00000540175 1423 ntBASIC18.06■□□□□ 0.48
SLC28A1O00337 HR-202ENST00000381418 6336 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 RBM42-201ENST00000262633 1680 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
SLC28A1O00337 SALRNA1-201ENST00000555871 2086 ntTSL 4 BASIC18.05■□□□□ 0.48
SLC28A1O00337 PPP2R2C-209ENST00000515571 1832 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 LEFTY2-201ENST00000366820 2287 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
SLC28A1O00337 HOXC11-201ENST00000243082 2039 ntTSL 3 BASIC18.05■□□□□ 0.48
SLC28A1O00337 RAB4A-201ENST00000366690 2966 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
Retrieved 100 of 98,524 protein–RNA pairs in 58.2 ms