Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 MIR1302-2HG-202ENST00000473358 712 ntTSL 5 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 AC140725.1-202ENST00000561145 712 ntTSL 5 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 CDIPT-204ENST00000563415 1047 ntTSL 3 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 AC073648.6-201ENST00000641589 218 ntBASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 CRHR2-207ENST00000471646 2530 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 TMEM110-201ENST00000355083 4769 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 OXSR1-201ENST00000311806 4553 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 FBXW11-202ENST00000296933 4539 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 EWSR1-207ENST00000406548 2207 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 IL17RC-215ENST00000455057 2244 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 KRBOX1-AS1-201ENST00000447834 2134 ntTSL 2 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 PTPRJ-202ENST00000440289 3158 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 HOXA9-201ENST00000343483 2060 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 ZNF395-211ENST00000523202 2068 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 SNAI3-AS1-205ENST00000568633 2096 ntBASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 SOGA3-203ENST00000525778 4077 ntAPPRIS P1 TSL 5 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 NECTIN3-206ENST00000485303 3664 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 PLCG1-201ENST00000244007 5285 ntAPPRIS P4 TSL 5 BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 CACNA1A-201ENST00000360228 8627 ntAPPRIS P4 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 JAG1-201ENST00000254958 6048 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 URI1-202ENST00000392271 3444 ntAPPRIS P3 TSL 1 (best) BASIC17.33■□□□□ 0.36
CPSF4LA6NMK7 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 RFC2-213ENST00000621097 1635 ntTSL 5 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 CTSB-202ENST00000353047 3875 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 RALGAPA1-219ENST00000637992 8512 ntTSL 5 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 KATNBL1P6-202ENST00000562413 1466 ntBASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 STRADB-202ENST00000392249 2190 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 CASKIN2-201ENST00000321617 5015 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 FCMR-202ENST00000442471 1441 ntTSL 2 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 AATF-208ENST00000619387 2141 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 ITPK1-202ENST00000354313 2803 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 TAF4B-201ENST00000269142 5260 ntAPPRIS P3 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 NCK1-207ENST00000481752 1971 ntAPPRIS P1 TSL 5 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 MRGPRG-201ENST00000332314 870 ntAPPRIS P1 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 ISG20-202ENST00000379224 540 ntTSL 3 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 AL359747.1-201ENST00000442370 536 ntTSL 2 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 ATP6V0E1-204ENST00000519911 718 ntTSL 2 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 RN7SL471P-201ENST00000580476 299 ntBASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 AC006058.3-201ENST00000606217 1069 ntBASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 NECTIN3-211ENST00000493615 1876 ntAPPRIS ALT2 TSL 2 BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 DDX51-202ENST00000397333 4718 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 PNKP-207ENST00000596014 1665 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 AC126763.1-201ENST00000552015 2118 ntBASIC17.32■□□□□ 0.36
CPSF4LA6NMK7 SEL1L3-202ENST00000399878 4520 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 NPNT-203ENST00000427316 2481 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 PKD1P1-201ENST00000458669 6805 ntBASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 KLC1-217ENST00000554280 2426 ntTSL 5 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 KRT8P11-201ENST00000409686 1436 ntBASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 ISL2-201ENST00000290759 1881 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 AC114490.1-202ENST00000311990 1887 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 SUMF2-202ENST00000342190 1876 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 SLC47A2-201ENST00000325411 2258 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 CLASRP-201ENST00000221455 2234 ntAPPRIS P2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 CLN8-211ENST00000636934 1790 ntTSL 5 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 KIAA1522-202ENST00000373480 5294 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 KIAA1522-203ENST00000373481 5293 ntAPPRIS ALT2 TSL 2 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 POU5F1P3-201ENST00000428824 1078 ntBASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 PTPA-216ENST00000432651 857 ntTSL 2 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 AC133681.1-201ENST00000465482 601 ntBASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 C17orf62-238ENST00000585064 1074 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 RPL23AP53-202ENST00000606507 370 ntTSL 3 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 AL445675.2-201ENST00000620291 557 ntBASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 AC131212.4-201ENST00000623606 975 ntBASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 REST-211ENST00000640168 1268 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 PPP1R18-201ENST00000274853 4599 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 PPP1R18-205ENST00000615527 4597 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 LGALS12-203ENST00000394618 1618 ntAPPRIS P3 TSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 RUNX1-207ENST00000437180 5967 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 RCC2P6-201ENST00000526625 1557 ntBASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 KRT86-202ENST00000423955 2217 ntAPPRIS P1 TSL 2 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 NXNL2-202ENST00000375855 1457 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 CELF2-217ENST00000638035 1849 ntAPPRIS P3 TSL 5 BASIC17.31■□□□□ 0.36
CPSF4LA6NMK7 TUBA4A-201ENST00000248437 2162 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
CPSF4LA6NMK7 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC17.3■□□□□ 0.36
CPSF4LA6NMK7 BAIAP2-203ENST00000416299 1442 ntTSL 2 BASIC17.3■□□□□ 0.36
CPSF4LA6NMK7 AP5S1-202ENST00000379567 1791 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
CPSF4LA6NMK7 EFTUD1P1-204ENST00000560401 1798 ntBASIC17.3■□□□□ 0.36
CPSF4LA6NMK7 PCSK5-202ENST00000376767 2845 ntTSL 2 BASIC17.3■□□□□ 0.36
CPSF4LA6NMK7 IL6R-202ENST00000368485 5914 ntAPPRIS P4 TSL 1 (best) BASIC17.3■□□□□ 0.36
CPSF4LA6NMK7 PRRT1-202ENST00000375150 1726 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 42.3 ms