Protein–RNA interactions for Protein: Q9H1J1

UPF3A, Regulator of nonsense transcripts 3A, humanhuman

Known RBP Predictions only

Length 476 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3AQ9H1J1 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC28.39■■■□□ 2.14
UPF3AQ9H1J1 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC28.39■■■□□ 2.14
UPF3AQ9H1J1 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC28.38■■■□□ 2.13
UPF3AQ9H1J1 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC28.38■■■□□ 2.13
UPF3AQ9H1J1 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 TNFRSF25-204ENST00000356876 1625 ntAPPRIS ALT2 TSL 1 (best) BASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 GLT8D1-201ENST00000266014 1849 ntAPPRIS P1 TSL 1 (best) BASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 AC007029.1-201ENST00000604183 313 ntBASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 AP004833.2-201ENST00000532228 1454 ntBASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC28.37■■■□□ 2.13
UPF3AQ9H1J1 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC28.36■■■□□ 2.13
UPF3AQ9H1J1 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC28.36■■■□□ 2.13
UPF3AQ9H1J1 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC28.36■■■□□ 2.13
UPF3AQ9H1J1 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC28.36■■■□□ 2.13
UPF3AQ9H1J1 RARRES2P1-201ENST00000474487 481 ntBASIC28.34■■■□□ 2.13
UPF3AQ9H1J1 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC28.34■■■□□ 2.13
UPF3AQ9H1J1 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC28.34■■■□□ 2.13
UPF3AQ9H1J1 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC28.34■■■□□ 2.13
UPF3AQ9H1J1 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
UPF3AQ9H1J1 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC28.33■■■□□ 2.13
UPF3AQ9H1J1 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC28.33■■■□□ 2.13
UPF3AQ9H1J1 UBE2I-213ENST00000566587 1098 ntAPPRIS P1 TSL 2 BASIC28.33■■■□□ 2.13
UPF3AQ9H1J1 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC28.33■■■□□ 2.13
UPF3AQ9H1J1 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC28.32■■■□□ 2.12
UPF3AQ9H1J1 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
UPF3AQ9H1J1 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC28.32■■■□□ 2.12
UPF3AQ9H1J1 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC28.32■■■□□ 2.12
UPF3AQ9H1J1 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC28.32■■■□□ 2.12
UPF3AQ9H1J1 SHOX2-204ENST00000483851 1866 ntAPPRIS ALT2 TSL 2 BASIC28.32■■■□□ 2.12
UPF3AQ9H1J1 AC129492.7-201ENST00000622992 756 ntBASIC28.31■■■□□ 2.12
UPF3AQ9H1J1 REST-210ENST00000638187 1334 ntTSL 5 BASIC28.31■■■□□ 2.12
UPF3AQ9H1J1 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC28.3■■■□□ 2.12
UPF3AQ9H1J1 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC28.3■■■□□ 2.12
UPF3AQ9H1J1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC28.3■■■□□ 2.12
UPF3AQ9H1J1 AC009831.1-201ENST00000580420 1582 ntBASIC28.29■■■□□ 2.12
UPF3AQ9H1J1 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC28.29■■■□□ 2.12
UPF3AQ9H1J1 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC28.28■■■□□ 2.12
UPF3AQ9H1J1 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC28.28■■■□□ 2.12
UPF3AQ9H1J1 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC28.27■■■□□ 2.12
UPF3AQ9H1J1 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC28.27■■■□□ 2.12
UPF3AQ9H1J1 AL592293.1-201ENST00000502889 1188 ntBASIC28.27■■■□□ 2.12
UPF3AQ9H1J1 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC28.27■■■□□ 2.12
UPF3AQ9H1J1 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC28.26■■■□□ 2.11
UPF3AQ9H1J1 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC28.26■■■□□ 2.11
UPF3AQ9H1J1 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.26■■■□□ 2.11
UPF3AQ9H1J1 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC28.25■■■□□ 2.11
UPF3AQ9H1J1 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
UPF3AQ9H1J1 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC28.25■■■□□ 2.11
UPF3AQ9H1J1 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC28.25■■■□□ 2.11
UPF3AQ9H1J1 AC133552.2-201ENST00000619106 1032 ntBASIC28.25■■■□□ 2.11
UPF3AQ9H1J1 ST7-AS1-201ENST00000456775 1889 ntBASIC28.25■■■□□ 2.11
UPF3AQ9H1J1 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC28.24■■■□□ 2.11
UPF3AQ9H1J1 SHC2-201ENST00000264554 2494 ntAPPRIS P1 TSL 1 (best) BASIC28.24■■■□□ 2.11
UPF3AQ9H1J1 AC008105.3-203ENST00000591365 2238 ntTSL 2 BASIC28.24■■■□□ 2.11
UPF3AQ9H1J1 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC28.24■■■□□ 2.11
UPF3AQ9H1J1 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC28.24■■■□□ 2.11
UPF3AQ9H1J1 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
UPF3AQ9H1J1 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC28.23■■■□□ 2.11
UPF3AQ9H1J1 ANGPTL6-201ENST00000253109 1900 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
UPF3AQ9H1J1 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC28.23■■■□□ 2.11
UPF3AQ9H1J1 SMPD5-203ENST00000639008 1464 ntBASIC28.22■■■□□ 2.11
UPF3AQ9H1J1 TM6SF1-202ENST00000322019 2074 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
UPF3AQ9H1J1 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC28.22■■■□□ 2.11
UPF3AQ9H1J1 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC28.21■■■□□ 2.11
UPF3AQ9H1J1 PROSER2-202ENST00000379200 1232 ntAPPRIS ALT2 BASIC28.21■■■□□ 2.11
UPF3AQ9H1J1 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC28.21■■■□□ 2.11
UPF3AQ9H1J1 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC28.21■■■□□ 2.11
UPF3AQ9H1J1 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC28.21■■■□□ 2.11
UPF3AQ9H1J1 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC28.21■■■□□ 2.11
UPF3AQ9H1J1 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC28.2■■■□□ 2.11
UPF3AQ9H1J1 AC100797.4-201ENST00000631653 1827 ntBASIC28.2■■■□□ 2.1
UPF3AQ9H1J1 AL359258.2-201ENST00000564063 1566 ntBASIC28.2■■■□□ 2.1
UPF3AQ9H1J1 AC025884.2-201ENST00000553429 711 ntBASIC28.19■■■□□ 2.1
UPF3AQ9H1J1 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC28.19■■■□□ 2.1
UPF3AQ9H1J1 TBX1-201ENST00000329705 1465 ntAPPRIS ALT2 TSL 1 (best) BASIC28.19■■■□□ 2.1
UPF3AQ9H1J1 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 DUX4L18-201ENST00000553347 1267 ntBASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 AC026202.3-201ENST00000600805 1127 ntBASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 EMC10-206ENST00000598585 1610 ntAPPRIS ALT2 TSL 5 BASIC28.18■■■□□ 2.1
UPF3AQ9H1J1 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC28.17■■■□□ 2.1
UPF3AQ9H1J1 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC28.16■■■□□ 2.1
UPF3AQ9H1J1 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC28.16■■■□□ 2.1
UPF3AQ9H1J1 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC28.14■■■□□ 2.1
UPF3AQ9H1J1 HES4-204ENST00000484667 667 ntTSL 3 BASIC28.14■■■□□ 2.1
UPF3AQ9H1J1 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC28.14■■■□□ 2.1
UPF3AQ9H1J1 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC28.14■■■□□ 2.1
UPF3AQ9H1J1 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC28.14■■■□□ 2.1
UPF3AQ9H1J1 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
UPF3AQ9H1J1 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
UPF3AQ9H1J1 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC28.13■■■□□ 2.09
UPF3AQ9H1J1 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC28.13■■■□□ 2.09
UPF3AQ9H1J1 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC28.13■■■□□ 2.09
Retrieved 100 of 98,524 protein–RNA pairs in 57.1 ms