Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 RPS2-210ENST00000530225 765 ntTSL 2 BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 AC009831.1-201ENST00000580420 1582 ntBASIC25.5■■□□□ 1.67
VPS13AQ96RL7 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
VPS13AQ96RL7 RASSF7-202ENST00000397583 1928 ntAPPRIS P3 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 SH3GLB2-201ENST00000372554 1985 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 LSM7-203ENST00000585409 512 ntTSL 2 BASIC25.49■■□□□ 1.67
VPS13AQ96RL7 FOXP1-201ENST00000318779 843 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 AC110285.7-201ENST00000624417 1536 ntBASIC25.48■■□□□ 1.67
VPS13AQ96RL7 PEMT-202ENST00000395781 1050 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 MAP4K3-211ENST00000484274 407 ntTSL 2 BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
VPS13AQ96RL7 ECEL1P2-201ENST00000461596 1295 ntBASIC25.47■■□□□ 1.67
VPS13AQ96RL7 AC025884.2-201ENST00000553429 711 ntBASIC25.47■■□□□ 1.67
VPS13AQ96RL7 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
VPS13AQ96RL7 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC25.47■■□□□ 1.67
VPS13AQ96RL7 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 HOXB3-202ENST00000460160 1525 ntTSL 5 BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 BEX3-202ENST00000372634 753 ntTSL 2 BASIC25.46■■□□□ 1.67
VPS13AQ96RL7 AC010980.1-201ENST00000587192 1142 ntBASIC25.46■■□□□ 1.67
VPS13AQ96RL7 C11orf91-201ENST00000379011 811 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS13AQ96RL7 AL356441.2-201ENST00000443009 864 ntBASIC25.45■■□□□ 1.66
VPS13AQ96RL7 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC25.45■■□□□ 1.66
VPS13AQ96RL7 AL592293.1-201ENST00000502889 1188 ntBASIC25.45■■□□□ 1.66
VPS13AQ96RL7 NTHL1-201ENST00000219066 1067 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS13AQ96RL7 AC103834.1-201ENST00000520383 144 ntBASIC25.44■■□□□ 1.66
VPS13AQ96RL7 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC25.44■■□□□ 1.66
VPS13AQ96RL7 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC25.44■■□□□ 1.66
VPS13AQ96RL7 AC133552.2-201ENST00000619106 1032 ntBASIC25.44■■□□□ 1.66
VPS13AQ96RL7 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 IGFBP6-201ENST00000301464 1169 ntAPPRIS P2 TSL 1 (best) BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC25.43■■□□□ 1.66
VPS13AQ96RL7 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
VPS13AQ96RL7 MAPK8IP1P1-201ENST00000574657 1439 ntBASIC25.42■■□□□ 1.66
VPS13AQ96RL7 AC120057.4-201ENST00000624722 1615 ntBASIC25.42■■□□□ 1.66
VPS13AQ96RL7 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 RDX-206ENST00000528900 1814 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC25.42■■□□□ 1.66
VPS13AQ96RL7 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 PYCR1-203ENST00000402252 1346 ntTSL 2 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC25.41■■□□□ 1.66
VPS13AQ96RL7 TRAPPC5-202ENST00000426877 765 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 MED25-210ENST00000612854 801 ntTSL 5 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 MED25-214ENST00000622402 642 ntTSL 5 BASIC25.4■■□□□ 1.66
VPS13AQ96RL7 AC103724.3-201ENST00000564481 992 ntBASIC25.39■■□□□ 1.66
VPS13AQ96RL7 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.39■■□□□ 1.66
VPS13AQ96RL7 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
VPS13AQ96RL7 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC25.38■■□□□ 1.65
VPS13AQ96RL7 AC127502.1-201ENST00000399971 1502 ntBASIC25.38■■□□□ 1.65
VPS13AQ96RL7 HOXB3-210ENST00000489475 1845 ntTSL 2 BASIC25.37■■□□□ 1.65
VPS13AQ96RL7 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC25.37■■□□□ 1.65
VPS13AQ96RL7 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 AL355490.1-201ENST00000445808 805 ntTSL 3 BASIC25.36■■□□□ 1.65
VPS13AQ96RL7 BHLHE23-202ENST00000612929 1109 ntBASIC25.36■■□□□ 1.65
VPS13AQ96RL7 PLA2G10-201ENST00000438167 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
VPS13AQ96RL7 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 TPRA1-201ENST00000296210 1725 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC25.34■■□□□ 1.65
VPS13AQ96RL7 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
VPS13AQ96RL7 AC026202.3-201ENST00000600805 1127 ntBASIC25.33■■□□□ 1.65
VPS13AQ96RL7 MIR6765-201ENST00000614092 87 ntBASIC25.33■■□□□ 1.65
VPS13AQ96RL7 SMPD5-203ENST00000639008 1464 ntBASIC25.33■■□□□ 1.65
VPS13AQ96RL7 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC25.33■■□□□ 1.65
VPS13AQ96RL7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC25.33■■□□□ 1.65
VPS13AQ96RL7 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC25.33■■□□□ 1.64
VPS13AQ96RL7 RHOBTB3-206ENST00000506817 1432 ntTSL 2 BASIC25.32■■□□□ 1.64
VPS13AQ96RL7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS13AQ96RL7 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
VPS13AQ96RL7 RAP2CP1-202ENST00000605179 643 ntBASIC25.32■■□□□ 1.64
VPS13AQ96RL7 AQP1-203ENST00000409899 1009 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 AC073934.1-201ENST00000490314 495 ntTSL 4 BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.31■■□□□ 1.64
VPS13AQ96RL7 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 TMEM165-204ENST00000506198 828 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 SPCS2P3-201ENST00000500401 656 ntBASIC25.3■■□□□ 1.64
VPS13AQ96RL7 PPP4C-201ENST00000279387 1407 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 AC139795.1-203ENST00000515045 853 ntTSL 2 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 LRMDA-215ENST00000611255 1040 ntAPPRIS ALT2 TSL 5 BASIC25.3■■□□□ 1.64
VPS13AQ96RL7 CNIH2-203ENST00000528852 1524 ntAPPRIS ALT1 TSL 1 (best) BASIC25.29■■□□□ 1.64
VPS13AQ96RL7 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC25.29■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 114 ms