Protein–RNA interactions for Protein: Q8NF91

SYNE1, Nesprin-1, humanhuman

Known RBP Predictions only

Length 8,797 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1Q8NF91 AC110285.7-201ENST00000624417 1536 ntBASIC7.67□□□□□ -1.18
SYNE1Q8NF91 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 ARHGEF7-206ENST00000375741 5525 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 PI4KAP2-202ENST00000450651 2294 ntTSL 5 BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 PWWP2B-201ENST00000305233 2651 ntAPPRIS P1 TSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 NRG3-203ENST00000404547 2163 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 SPATA33-209ENST00000579310 1490 ntAPPRIS ALT2 TSL 2 BASIC7.67□□□□□ -1.18
SYNE1Q8NF91 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 ATP5G2P3-201ENST00000429083 425 ntBASIC7.66□□□□□ -1.18
SYNE1Q8NF91 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 GAL3ST3-203ENST00000527878 1599 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC7.66□□□□□ -1.18
SYNE1Q8NF91 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 MIR219A2-201ENST00000608502 1504 ntBASIC7.66□□□□□ -1.18
SYNE1Q8NF91 SSTR5-201ENST00000293897 1362 ntAPPRIS P1 BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC7.66□□□□□ -1.18
SYNE1Q8NF91 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 RARRES2P1-201ENST00000474487 481 ntBASIC7.65□□□□□ -1.18
SYNE1Q8NF91 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 AL157400.5-201ENST00000507624 621 ntBASIC7.65□□□□□ -1.18
SYNE1Q8NF91 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 HYI-213ENST00000583037 1322 ntTSL 5 BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 CMPK2-203ENST00000458098 1224 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 MOB2-207ENST00000614710 705 ntTSL 5 BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC7.65□□□□□ -1.18
SYNE1Q8NF91 TSPY13P-201ENST00000338964 914 ntBASIC7.65□□□□□ -1.19
SYNE1Q8NF91 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC7.65□□□□□ -1.19
SYNE1Q8NF91 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC7.65□□□□□ -1.19
SYNE1Q8NF91 LAGE3-201ENST00000357360 949 ntAPPRIS P1 TSL 1 (best) BASIC7.65□□□□□ -1.19
SYNE1Q8NF91 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC7.65□□□□□ -1.19
SYNE1Q8NF91 OVOL2-201ENST00000278780 1555 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 FGFRL1-205ENST00000510644 2304 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 SNX15-202ENST00000377244 1939 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 RPS2-210ENST00000530225 765 ntTSL 2 BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 HAUS7-201ENST00000370210 1593 ntAPPRIS ALT2 TSL 2 BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 AC100797.4-201ENST00000631653 1827 ntBASIC7.64□□□□□ -1.19
SYNE1Q8NF91 ZMYND19-201ENST00000298585 1375 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 HES4-202ENST00000428771 1040 ntTSL 2 BASIC7.64□□□□□ -1.19
SYNE1Q8NF91 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 EPB41L4A-AS2-201ENST00000623705 1396 ntBASIC7.63□□□□□ -1.19
SYNE1Q8NF91 TMEM268-201ENST00000288502 2314 ntAPPRIS P3 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 LRRC10B-201ENST00000378075 2219 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 ATOH7-201ENST00000373673 1480 ntAPPRIS P1 BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC7.63□□□□□ -1.19
SYNE1Q8NF91 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 RASL10A-202ENST00000401450 1720 ntTSL 2 BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 TPM2-203ENST00000378292 2147 ntAPPRIS ALT1 TSL 1 (best) BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 TSPAN3-203ENST00000424443 1530 ntTSL 2 BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC7.62□□□□□ -1.19
SYNE1Q8NF91 AC012354.3-201ENST00000623734 483 ntBASIC7.62□□□□□ -1.19
SYNE1Q8NF91 AL451085.2-201ENST00000605085 799 ntBASIC7.62□□□□□ -1.19
SYNE1Q8NF91 ST7-AS1-201ENST00000456775 1889 ntBASIC7.61□□□□□ -1.19
SYNE1Q8NF91 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 FOXA2-202ENST00000419308 2422 ntAPPRIS ALT2 TSL 1 (best) BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 AL592293.1-201ENST00000502889 1188 ntBASIC7.61□□□□□ -1.19
SYNE1Q8NF91 AGAP1-202ENST00000336665 5427 ntAPPRIS P3 TSL 1 (best) BASIC7.61□□□□□ -1.19
SYNE1Q8NF91 AC025884.2-201ENST00000553429 711 ntBASIC7.6□□□□□ -1.19
SYNE1Q8NF91 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC7.6□□□□□ -1.19
SYNE1Q8NF91 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC7.6□□□□□ -1.19
SYNE1Q8NF91 G6PC3-201ENST00000269097 1533 ntAPPRIS P1 TSL 1 (best) BASIC7.6□□□□□ -1.19
Retrieved 100 of 98,524 protein–RNA pairs in 10.2 ms