Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC33.69■■■□□ 2.98
USHBP1Q8N6Y0 C20orf24-203ENST00000373852 1059 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
USHBP1Q8N6Y0 GFER-205ENST00000569451 517 ntTSL 5 BASIC33.68■■■□□ 2.98
USHBP1Q8N6Y0 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC33.68■■■□□ 2.98
USHBP1Q8N6Y0 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC33.68■■■□□ 2.98
USHBP1Q8N6Y0 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC33.68■■■□□ 2.98
USHBP1Q8N6Y0 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC33.67■■■□□ 2.98
USHBP1Q8N6Y0 ECEL1P2-201ENST00000461596 1295 ntBASIC33.67■■■□□ 2.98
USHBP1Q8N6Y0 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC33.66■■■□□ 2.98
USHBP1Q8N6Y0 PHF20L1-207ENST00000395379 1998 ntTSL 5 BASIC33.65■■■□□ 2.98
USHBP1Q8N6Y0 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC33.65■■■□□ 2.98
USHBP1Q8N6Y0 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC33.65■■■□□ 2.98
USHBP1Q8N6Y0 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC33.65■■■□□ 2.98
USHBP1Q8N6Y0 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC33.64■■■□□ 2.98
USHBP1Q8N6Y0 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC33.63■■■□□ 2.97
USHBP1Q8N6Y0 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC33.63■■■□□ 2.97
USHBP1Q8N6Y0 AC004987.1-201ENST00000428627 508 ntBASIC33.63■■■□□ 2.97
USHBP1Q8N6Y0 NEUROG2-201ENST00000313341 2287 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
USHBP1Q8N6Y0 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC33.62■■■□□ 2.97
USHBP1Q8N6Y0 FKBP1A-205ENST00000439640 1583 ntTSL 3 BASIC33.62■■■□□ 2.97
USHBP1Q8N6Y0 RDX-210ENST00000530301 1549 ntTSL 1 (best) BASIC33.62■■■□□ 2.97
USHBP1Q8N6Y0 PRRX2-201ENST00000372469 1311 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
USHBP1Q8N6Y0 FGF18-201ENST00000274625 1986 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
USHBP1Q8N6Y0 AP004833.2-201ENST00000532228 1454 ntBASIC33.61■■■□□ 2.97
USHBP1Q8N6Y0 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC33.61■■■□□ 2.97
USHBP1Q8N6Y0 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC33.61■■■□□ 2.97
USHBP1Q8N6Y0 PSMG4-207ENST00000451246 824 ntTSL 3 BASIC33.59■■■□□ 2.97
USHBP1Q8N6Y0 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC33.59■■■□□ 2.97
USHBP1Q8N6Y0 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC33.59■■■□□ 2.97
USHBP1Q8N6Y0 OPRD1-202ENST00000621425 1217 ntTSL 1 (best) BASIC33.59■■■□□ 2.97
USHBP1Q8N6Y0 LOR-201ENST00000368742 1230 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
USHBP1Q8N6Y0 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC33.58■■■□□ 2.97
USHBP1Q8N6Y0 MRPL23-205ENST00000397298 736 ntAPPRIS P1 TSL 1 (best) BASIC33.58■■■□□ 2.97
USHBP1Q8N6Y0 FTCD-204ENST00000397748 1955 ntTSL 1 (best) BASIC33.58■■■□□ 2.97
USHBP1Q8N6Y0 MPP6-203ENST00000409761 1703 ntTSL 5 BASIC33.57■■■□□ 2.96
USHBP1Q8N6Y0 ATP5G2P3-201ENST00000429083 425 ntBASIC33.57■■■□□ 2.96
USHBP1Q8N6Y0 AC126177.7-201ENST00000547904 679 ntBASIC33.57■■■□□ 2.96
USHBP1Q8N6Y0 SAP25-204ENST00000622764 1031 ntAPPRIS ALT2 TSL 5 BASIC33.57■■■□□ 2.96
USHBP1Q8N6Y0 TSPY13P-201ENST00000338964 914 ntBASIC33.56■■■□□ 2.96
USHBP1Q8N6Y0 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC33.56■■■□□ 2.96
USHBP1Q8N6Y0 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC33.56■■■□□ 2.96
USHBP1Q8N6Y0 LINC01770-201ENST00000417917 634 ntTSL 2 BASIC33.56■■■□□ 2.96
USHBP1Q8N6Y0 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC33.56■■■□□ 2.96
USHBP1Q8N6Y0 SLC15A4-201ENST00000266771 2779 ntAPPRIS P1 TSL 1 (best) BASIC33.55■■■□□ 2.96
USHBP1Q8N6Y0 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC33.55■■■□□ 2.96
USHBP1Q8N6Y0 ZFAND2B-208ENST00000409594 2021 ntTSL 2 BASIC33.54■■■□□ 2.96
USHBP1Q8N6Y0 AC107214.1-201ENST00000457303 559 ntTSL 1 (best) BASIC33.54■■■□□ 2.96
USHBP1Q8N6Y0 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC33.54■■■□□ 2.96
USHBP1Q8N6Y0 DDAH2-212ENST00000375789 1688 ntAPPRIS P1 TSL 2 BASIC33.53■■■□□ 2.96
USHBP1Q8N6Y0 DDAH2-213ENST00000375792 1688 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
USHBP1Q8N6Y0 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC33.53■■■□□ 2.96
USHBP1Q8N6Y0 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC33.53■■■□□ 2.96
USHBP1Q8N6Y0 CAPNS1-216ENST00000628306 1389 ntTSL 5 BASIC33.53■■■□□ 2.96
USHBP1Q8N6Y0 MZT2B-201ENST00000281871 933 ntAPPRIS P3 TSL 1 (best) BASIC33.53■■■□□ 2.96
USHBP1Q8N6Y0 MZT2A-201ENST00000309451 624 ntAPPRIS P1 TSL 1 (best) BASIC33.53■■■□□ 2.96
USHBP1Q8N6Y0 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC33.52■■■□□ 2.96
USHBP1Q8N6Y0 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC33.52■■■□□ 2.96
USHBP1Q8N6Y0 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC33.52■■■□□ 2.96
USHBP1Q8N6Y0 PPP1R14A-201ENST00000301242 777 ntAPPRIS P1 TSL 1 (best) BASIC33.51■■■□□ 2.95
USHBP1Q8N6Y0 LYPD6B-204ENST00000409876 1248 ntAPPRIS ALT2 TSL 1 (best) BASIC33.51■■■□□ 2.95
USHBP1Q8N6Y0 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC33.51■■■□□ 2.95
USHBP1Q8N6Y0 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC33.51■■■□□ 2.95
USHBP1Q8N6Y0 GUK1-208ENST00000366728 842 ntTSL 2 BASIC33.5■■■□□ 2.95
USHBP1Q8N6Y0 NRBF2-202ENST00000435510 1816 ntTSL 2 BASIC33.5■■■□□ 2.95
USHBP1Q8N6Y0 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC33.5■■■□□ 2.95
USHBP1Q8N6Y0 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC33.49■■■□□ 2.95
USHBP1Q8N6Y0 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC33.48■■■□□ 2.95
USHBP1Q8N6Y0 IFI30-201ENST00000407280 1134 ntAPPRIS P1 TSL 1 (best) BASIC33.48■■■□□ 2.95
USHBP1Q8N6Y0 AC007029.1-201ENST00000604183 313 ntBASIC33.48■■■□□ 2.95
USHBP1Q8N6Y0 CCNYL1-203ENST00000392209 1952 ntTSL 2 BASIC33.48■■■□□ 2.95
USHBP1Q8N6Y0 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC33.47■■■□□ 2.95
USHBP1Q8N6Y0 AL359258.2-201ENST00000564063 1566 ntBASIC33.47■■■□□ 2.95
USHBP1Q8N6Y0 AL139393.2-201ENST00000608721 2025 ntBASIC33.46■■■□□ 2.95
USHBP1Q8N6Y0 TPRG1L-202ENST00000378344 2414 ntAPPRIS P1 TSL 2 BASIC33.46■■■□□ 2.95
USHBP1Q8N6Y0 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC33.46■■■□□ 2.95
USHBP1Q8N6Y0 GNAS-AS1_1.1-201ENST00000621898 103 ntBASIC33.46■■■□□ 2.95
USHBP1Q8N6Y0 ARPC2-202ENST00000315717 1505 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.95
USHBP1Q8N6Y0 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC33.45■■■□□ 2.95
USHBP1Q8N6Y0 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC33.45■■■□□ 2.95
USHBP1Q8N6Y0 ABCB10P3-201ENST00000561950 2166 ntBASIC33.45■■■□□ 2.95
USHBP1Q8N6Y0 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC33.45■■■□□ 2.94
USHBP1Q8N6Y0 AC009831.1-201ENST00000580420 1582 ntBASIC33.44■■■□□ 2.94
USHBP1Q8N6Y0 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC33.44■■■□□ 2.94
USHBP1Q8N6Y0 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC33.44■■■□□ 2.94
USHBP1Q8N6Y0 FHL2-202ENST00000344213 1769 ntTSL 1 (best) BASIC33.44■■■□□ 2.94
USHBP1Q8N6Y0 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC33.43■■■□□ 2.94
USHBP1Q8N6Y0 FOXE3-201ENST00000335071 1981 ntAPPRIS P1 BASIC33.43■■■□□ 2.94
USHBP1Q8N6Y0 ANKS1B-203ENST00000341752 2115 ntTSL 2 BASIC33.43■■■□□ 2.94
USHBP1Q8N6Y0 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC33.43■■■□□ 2.94
USHBP1Q8N6Y0 MYCL-202ENST00000372816 1688 ntAPPRIS P3 TSL 2 BASIC33.42■■■□□ 2.94
USHBP1Q8N6Y0 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
USHBP1Q8N6Y0 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
USHBP1Q8N6Y0 AL592293.1-201ENST00000502889 1188 ntBASIC33.42■■■□□ 2.94
USHBP1Q8N6Y0 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC33.42■■■□□ 2.94
USHBP1Q8N6Y0 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC33.42■■■□□ 2.94
USHBP1Q8N6Y0 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC33.41■■■□□ 2.94
USHBP1Q8N6Y0 AC129492.7-201ENST00000622992 756 ntBASIC33.41■■■□□ 2.94
USHBP1Q8N6Y0 GATA2-AS1-202ENST00000468377 1578 ntTSL 2 BASIC33.41■■■□□ 2.94
USHBP1Q8N6Y0 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC33.4■■■□□ 2.94
USHBP1Q8N6Y0 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC33.4■■■□□ 2.94
Retrieved 100 of 98,524 protein–RNA pairs in 49.4 ms