Protein–RNA interactions for Protein: Q8IVM7

LINC00346, Putative uncharacterized protein encoded by LINC00346, humanhuman

Predictions only

Length 164 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00346Q8IVM7 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
LINC00346Q8IVM7 DACT2-202ENST00000366796 2028 ntAPPRIS ALT2 TSL 1 (best) BASIC22.22■■□□□ 1.15
LINC00346Q8IVM7 TANGO2-214ENST00000447208 2086 ntTSL 3 BASIC22.22■■□□□ 1.15
LINC00346Q8IVM7 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 DUX4L29-201ENST00000425409 679 ntBASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 FAM120AOS-202ENST00000423591 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 C2orf88-204ENST00000409870 1441 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
LINC00346Q8IVM7 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
LINC00346Q8IVM7 FAM107B-205ENST00000378467 2374 ntAPPRIS P1 TSL 1 (best) BASIC22.2■■□□□ 1.15
LINC00346Q8IVM7 MACROD1-201ENST00000255681 1205 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LINC00346Q8IVM7 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LINC00346Q8IVM7 PLEKHJ1-201ENST00000326631 1206 ntAPPRIS P1 TSL 1 (best) BASIC22.19■■□□□ 1.14
LINC00346Q8IVM7 COPRS-202ENST00000378634 1041 ntTSL 2 BASIC22.19■■□□□ 1.14
LINC00346Q8IVM7 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC22.19■■□□□ 1.14
LINC00346Q8IVM7 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC22.19■■□□□ 1.14
LINC00346Q8IVM7 PHF23-205ENST00000571362 1768 ntTSL 2 BASIC22.18■■□□□ 1.14
LINC00346Q8IVM7 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC22.18■■□□□ 1.14
LINC00346Q8IVM7 RAD21-AS1-201ENST00000521487 2010 ntTSL 1 (best) BASIC22.18■■□□□ 1.14
LINC00346Q8IVM7 FAM66E-202ENST00000533615 2087 ntTSL 2 BASIC22.17■■□□□ 1.14
LINC00346Q8IVM7 PKM-203ENST00000389093 2279 ntTSL 5 BASIC22.16■■□□□ 1.14
LINC00346Q8IVM7 F8A1-201ENST00000610495 1713 ntAPPRIS P1 BASIC22.16■■□□□ 1.14
LINC00346Q8IVM7 CHSY1-201ENST00000254190 4550 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 NKPD1-202ENST00000589776 1950 ntAPPRIS P1 BASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 AKAP8L-208ENST00000595465 1933 ntTSL 2 BASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 NR6A1-203ENST00000416460 1898 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 AC110285.7-201ENST00000624417 1536 ntBASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 NXPH3-201ENST00000328741 2179 ntAPPRIS P1 TSL 1 (best) BASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 C14orf80-205ENST00000392523 1845 ntAPPRIS ALT2 TSL 1 (best) BASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 FBXL8-206ENST00000519917 1460 ntAPPRIS P1 TSL 5 BASIC22.15■■□□□ 1.14
LINC00346Q8IVM7 AP000251.1-201ENST00000433071 822 ntTSL 1 (best) BASIC22.14■■□□□ 1.13
LINC00346Q8IVM7 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC22.14■■□□□ 1.13
LINC00346Q8IVM7 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC22.13■■□□□ 1.13
LINC00346Q8IVM7 C8orf58-202ENST00000409586 2021 ntAPPRIS ALT2 TSL 2 BASIC22.13■■□□□ 1.13
LINC00346Q8IVM7 C11orf80-210ENST00000527634 1666 ntAPPRIS ALT2 TSL 5 BASIC22.13■■□□□ 1.13
LINC00346Q8IVM7 ZDHHC16-201ENST00000345745 1519 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
LINC00346Q8IVM7 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC22.12■■□□□ 1.13
LINC00346Q8IVM7 BBC3-204ENST00000449228 1827 ntTSL 1 (best) BASIC22.12■■□□□ 1.13
LINC00346Q8IVM7 SETBP1-202ENST00000426838 1785 ntAPPRIS ALT2 TSL 1 (best) BASIC22.12■■□□□ 1.13
LINC00346Q8IVM7 UNCX-201ENST00000316333 2048 ntAPPRIS P1 TSL 1 (best) BASIC22.11■■□□□ 1.13
LINC00346Q8IVM7 AC009690.3-201ENST00000569547 1902 ntAPPRIS P1 TSL 2 BASIC22.1■■□□□ 1.13
LINC00346Q8IVM7 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC22.1■■□□□ 1.13
LINC00346Q8IVM7 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC22.1■■□□□ 1.13
LINC00346Q8IVM7 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC22.1■■□□□ 1.13
LINC00346Q8IVM7 NELFB-202ENST00000634710 1887 ntAPPRIS P2 TSL 1 (best) BASIC22.09■■□□□ 1.13
LINC00346Q8IVM7 TCAM1P-201ENST00000463377 452 ntTSL 3 BASIC22.09■■□□□ 1.13
LINC00346Q8IVM7 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LINC00346Q8IVM7 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC22.09■■□□□ 1.13
LINC00346Q8IVM7 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC22.09■■□□□ 1.13
LINC00346Q8IVM7 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC22.09■■□□□ 1.13
LINC00346Q8IVM7 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
LINC00346Q8IVM7 ZDHHC16-207ENST00000393760 2014 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.13
LINC00346Q8IVM7 CMC4-202ENST00000369484 1107 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.13
LINC00346Q8IVM7 NPHP3-202ENST00000383282 782 ntTSL 1 (best) BASIC22.08■■□□□ 1.13
LINC00346Q8IVM7 AC004540.2-201ENST00000451368 611 ntTSL 2 BASIC22.08■■□□□ 1.13
LINC00346Q8IVM7 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC22.08■■□□□ 1.13
LINC00346Q8IVM7 HGH1-207ENST00000628266 258 ntTSL 5 BASIC22.08■■□□□ 1.13
LINC00346Q8IVM7 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
LINC00346Q8IVM7 HOMER3-202ENST00000392351 1557 ntAPPRIS P3 TSL 1 (best) BASIC22.08■■□□□ 1.12
LINC00346Q8IVM7 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
LINC00346Q8IVM7 ANKRD53-203ENST00000441349 1797 ntTSL 5 BASIC22.07■■□□□ 1.12
LINC00346Q8IVM7 DAZAP1-202ENST00000336761 2290 ntTSL 5 BASIC22.07■■□□□ 1.12
LINC00346Q8IVM7 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC22.07■■□□□ 1.12
LINC00346Q8IVM7 ARTN-203ENST00000414809 1943 ntAPPRIS P4 TSL 3 BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 KIAA2013-201ENST00000376572 2815 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 PABPC1L2B-AS1-201ENST00000416989 1167 ntTSL 3 BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 AL662864.1-201ENST00000454388 1167 ntTSL 3 BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 PEX7-203ENST00000541292 945 ntTSL 5 BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 RTN2-208ENST00000590526 2357 ntTSL 5 BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC22.06■■□□□ 1.12
LINC00346Q8IVM7 ZNF653-201ENST00000293771 2240 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LINC00346Q8IVM7 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
LINC00346Q8IVM7 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC22.05■■□□□ 1.12
LINC00346Q8IVM7 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
LINC00346Q8IVM7 EMID1-202ENST00000404755 2049 ntTSL 5 BASIC22.04■■□□□ 1.12
LINC00346Q8IVM7 LYPD6B-203ENST00000409642 1577 ntAPPRIS P3 TSL 1 (best) BASIC22.04■■□□□ 1.12
LINC00346Q8IVM7 AC231981.1-201ENST00000450917 974 ntTSL 3 BASIC22.04■■□□□ 1.12
LINC00346Q8IVM7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LINC00346Q8IVM7 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
LINC00346Q8IVM7 RUNX2-203ENST00000371436 1588 ntAPPRIS ALT2 TSL 5 BASIC22.04■■□□□ 1.12
LINC00346Q8IVM7 NTN3-201ENST00000293973 1986 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 PLPPR3-201ENST00000359894 2387 ntAPPRIS P3 TSL 1 (best) BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 IRAK1-205ENST00000429936 2127 ntTSL 5 BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 NRARP-201ENST00000356628 1770 ntAPPRIS P1 BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 U2AF1-203ENST00000398137 1019 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 PARD6A-202ENST00000458121 1260 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 ZNF706-207ENST00000519882 959 ntAPPRIS P1 TSL 3 BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 ZNF706-213ENST00000521272 732 ntAPPRIS P1 TSL 5 BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 U2AF1L5-212ENST00000639996 1019 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
LINC00346Q8IVM7 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC22.02■■□□□ 1.12
LINC00346Q8IVM7 RFFL-206ENST00000447669 2030 ntAPPRIS P1 TSL 5 BASIC22.02■■□□□ 1.12
LINC00346Q8IVM7 RPUSD1-207ENST00000565809 1918 ntTSL 2 BASIC22.02■■□□□ 1.11
LINC00346Q8IVM7 VSIG8-201ENST00000368100 1818 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
LINC00346Q8IVM7 TIGD3-201ENST00000309880 2012 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
LINC00346Q8IVM7 CDPF1-201ENST00000314567 1875 ntAPPRIS P2 TSL 1 (best) BASIC22.01■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms