Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 DPF1-204ENST00000416611 2341 ntTSL 5 BASIC31.39■■■□□ 2.62
CCDC88AQ3V6T2 C16orf59-202ENST00000483320 1709 ntAPPRIS ALT2 TSL 2 BASIC31.38■■■□□ 2.61
CCDC88AQ3V6T2 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC31.38■■■□□ 2.61
CCDC88AQ3V6T2 ECEL1P2-201ENST00000461596 1295 ntBASIC31.38■■■□□ 2.61
CCDC88AQ3V6T2 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC88AQ3V6T2 TAZ-215ENST00000612460 1793 ntAPPRIS P1 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC88AQ3V6T2 HNRNPAB-205ENST00000506259 1674 ntAPPRIS ALT2 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC88AQ3V6T2 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC88AQ3V6T2 MED25-210ENST00000612854 801 ntTSL 5 BASIC31.36■■■□□ 2.61
CCDC88AQ3V6T2 MED25-213ENST00000620467 1293 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC88AQ3V6T2 MED25-214ENST00000622402 642 ntTSL 5 BASIC31.36■■■□□ 2.61
CCDC88AQ3V6T2 CERS2-201ENST00000271688 2544 ntAPPRIS P1 TSL 5 BASIC31.36■■■□□ 2.61
CCDC88AQ3V6T2 FSD1L-208ENST00000495708 1906 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC88AQ3V6T2 OXLD1-201ENST00000374741 620 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CCDC88AQ3V6T2 KCTD15-206ENST00000588881 1211 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
CCDC88AQ3V6T2 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC31.35■■■□□ 2.61
CCDC88AQ3V6T2 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC31.35■■■□□ 2.61
CCDC88AQ3V6T2 POU3F1-201ENST00000373012 2184 ntAPPRIS P1 BASIC31.35■■■□□ 2.61
CCDC88AQ3V6T2 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC88AQ3V6T2 NKX2-1-204ENST00000522719 1417 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC88AQ3V6T2 TFEB-204ENST00000373033 2331 ntAPPRIS P1 TSL 1 (best) BASIC31.34■■■□□ 2.61
CCDC88AQ3V6T2 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC31.33■■■□□ 2.61
CCDC88AQ3V6T2 HNRNPAB-202ENST00000358344 1796 ntAPPRIS P4 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88AQ3V6T2 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88AQ3V6T2 MIR1-1HG-202ENST00000624914 1220 ntTSL 1 (best) BASIC31.33■■■□□ 2.61
CCDC88AQ3V6T2 AC009299.2-201ENST00000482477 511 ntBASIC31.32■■■□□ 2.6
CCDC88AQ3V6T2 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC31.32■■■□□ 2.6
CCDC88AQ3V6T2 C1QTNF8-201ENST00000328449 1627 ntAPPRIS P1 TSL 5 BASIC31.32■■■□□ 2.6
CCDC88AQ3V6T2 AC131212.1-201ENST00000613771 668 ntBASIC31.31■■■□□ 2.6
CCDC88AQ3V6T2 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC31.31■■■□□ 2.6
CCDC88AQ3V6T2 FAM78B-201ENST00000338353 1597 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC88AQ3V6T2 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC31.31■■■□□ 2.6
CCDC88AQ3V6T2 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88AQ3V6T2 SLC52A2-201ENST00000329994 1896 ntAPPRIS P1 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88AQ3V6T2 AC007029.1-201ENST00000604183 313 ntBASIC31.3■■■□□ 2.6
CCDC88AQ3V6T2 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.3■■■□□ 2.6
CCDC88AQ3V6T2 AC127502.1-201ENST00000399971 1502 ntBASIC31.3■■■□□ 2.6
CCDC88AQ3V6T2 AC133552.2-201ENST00000619106 1032 ntBASIC31.29■■■□□ 2.6
CCDC88AQ3V6T2 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.29■■■□□ 2.6
CCDC88AQ3V6T2 EIF5A-211ENST00000576930 1439 ntAPPRIS P1 TSL 5 BASIC31.29■■■□□ 2.6
CCDC88AQ3V6T2 GAL3ST1-205ENST00000406361 1819 ntAPPRIS P1 TSL 2 BASIC31.28■■■□□ 2.6
CCDC88AQ3V6T2 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC31.28■■■□□ 2.6
CCDC88AQ3V6T2 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88AQ3V6T2 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC88AQ3V6T2 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC31.27■■■□□ 2.6
CCDC88AQ3V6T2 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC31.27■■■□□ 2.6
CCDC88AQ3V6T2 AGAP3-211ENST00000473312 2039 ntTSL 1 (best) BASIC31.26■■■□□ 2.6
CCDC88AQ3V6T2 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC31.26■■■□□ 2.59
CCDC88AQ3V6T2 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC31.26■■■□□ 2.59
CCDC88AQ3V6T2 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC31.26■■■□□ 2.59
CCDC88AQ3V6T2 AC009831.1-201ENST00000580420 1582 ntBASIC31.26■■■□□ 2.59
CCDC88AQ3V6T2 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC31.25■■■□□ 2.59
CCDC88AQ3V6T2 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88AQ3V6T2 DUX4L18-201ENST00000553347 1267 ntBASIC31.25■■■□□ 2.59
CCDC88AQ3V6T2 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC31.25■■■□□ 2.59
CCDC88AQ3V6T2 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC31.25■■■□□ 2.59
CCDC88AQ3V6T2 UBAC1-201ENST00000371756 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88AQ3V6T2 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88AQ3V6T2 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC88AQ3V6T2 ARL6IP4-208ENST00000439686 796 ntAPPRIS ALT2 TSL 3 BASIC31.24■■■□□ 2.59
CCDC88AQ3V6T2 RAMP2-AS1-202ENST00000589716 1985 ntTSL 5 BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 BCL7C-201ENST00000215115 1740 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC31.23■■■□□ 2.59
CCDC88AQ3V6T2 LFNG-201ENST00000222725 2377 ntAPPRIS P4 TSL 5 BASIC31.21■■■□□ 2.59
CCDC88AQ3V6T2 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88AQ3V6T2 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88AQ3V6T2 FLVCR1-AS1-203ENST00000426161 892 ntTSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC88AQ3V6T2 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC31.21■■■□□ 2.59
CCDC88AQ3V6T2 REST-210ENST00000638187 1334 ntTSL 5 BASIC31.21■■■□□ 2.59
CCDC88AQ3V6T2 DUX4L9-201ENST00000449051 1259 ntBASIC31.19■■■□□ 2.58
CCDC88AQ3V6T2 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC31.19■■■□□ 2.58
CCDC88AQ3V6T2 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88AQ3V6T2 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88AQ3V6T2 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC31.18■■■□□ 2.58
CCDC88AQ3V6T2 C14orf80-203ENST00000354560 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC31.18■■■□□ 2.58
CCDC88AQ3V6T2 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC31.18■■■□□ 2.58
CCDC88AQ3V6T2 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC31.17■■■□□ 2.58
CCDC88AQ3V6T2 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC31.17■■■□□ 2.58
CCDC88AQ3V6T2 FAM120C-203ENST00000477084 1140 ntAPPRIS ALT2 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88AQ3V6T2 CCDC160-202ENST00000517294 1790 ntAPPRIS P1 TSL 5 BASIC31.16■■■□□ 2.58
CCDC88AQ3V6T2 PHF23-201ENST00000320316 2037 ntAPPRIS P1 TSL 1 (best) BASIC31.16■■■□□ 2.58
CCDC88AQ3V6T2 ST7-AS1-201ENST00000456775 1889 ntBASIC31.15■■■□□ 2.58
CCDC88AQ3V6T2 IGFBP7-201ENST00000295666 1427 ntAPPRIS P3 TSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC88AQ3V6T2 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC31.14■■■□□ 2.58
CCDC88AQ3V6T2 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC88AQ3V6T2 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC31.14■■■□□ 2.58
CCDC88AQ3V6T2 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC31.14■■■□□ 2.58
CCDC88AQ3V6T2 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC31.13■■■□□ 2.57
CCDC88AQ3V6T2 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88AQ3V6T2 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC31.13■■■□□ 2.57
CCDC88AQ3V6T2 BEX3-202ENST00000372634 753 ntTSL 2 BASIC31.12■■■□□ 2.57
CCDC88AQ3V6T2 CBLN1-201ENST00000219197 2435 ntAPPRIS P1 TSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC88AQ3V6T2 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC31.12■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 11.8 ms