Protein–RNA interactions for Protein: Q01477

UBP3, Ubiquitin carboxyl-terminal hydrolase 3, yeastyeast

Known RBP RIP-Chip data

Length 912 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
UBP3Q01477 tL(UAA)DtL(UAA)D 84 nt8.22□□□□□ -1.09
UBP3Q01477 SUP51tL(UAA)J 84 nt8.22□□□□□ -1.09
UBP3Q01477 tL(UAA)KtL(UAA)K 84 nt8.22□□□□□ -1.09
UBP3Q01477 tL(UAA)LtL(UAA)L 84 nt8.22□□□□□ -1.09
UBP3Q01477 tL(UAA)NtL(UAA)N 84 nt8.22□□□□□ -1.09
UBP3Q01477 YGR137WYGR137W 375 nt8.22□□□□□ -1.09
UBP3Q01477 ARG7YMR062C 1326 nt8.22□□□□□ -1.09
UBP3Q01477 MTC6YHR151C 1581 nt8.22□□□□□ -1.09
UBP3Q01477 BEM1YBR200W 1656 nt8.21□□□□□ -1.09
UBP3Q01477 YDR509WYDR509W 348 nt8.21□□□□□ -1.1
UBP3Q01477 SKG1YKR100C 1068 nt8.21□□□□□ -1.1
UBP3Q01477 ADE1YAR015W 921 nt8.21□□□□□ -1.1
UBP3Q01477 KTR4YBR199W 1395 nt8.21□□□□□ -1.1
UBP3Q01477 YRF1-3YGR296W 5580 nt8.2□□□□□ -1.1
UBP3Q01477 YRF1-6YNL339C 5580 nt8.2□□□□□ -1.1
UBP3Q01477 YRF1-7YPL283C 5580 nt8.2□□□□□ -1.1
UBP3Q01477 YDR401WYDR401W 564 nt8.2□□□□□ -1.1
UBP3Q01477 DIA4YHR011W 1341 nt8.2□□□□□ -1.1
UBP3Q01477 APT1YML022W 564 nt8.19□□□□□ -1.1
UBP3Q01477 TPO1YLL028W 1761 nt8.19□□□□□ -1.1
UBP3Q01477 RRP46YGR095C 672 nt8.18□□□□□ -1.1
UBP3Q01477 COX16YJL003W 357 nt8.18□□□□□ -1.1
UBP3Q01477 TOS1YBR162C 1368 nt8.18□□□□□ -1.1
UBP3Q01477 GUT1YHL032C 2130 nt8.17□□□□□ -1.1
UBP3Q01477 snR78snR78 87 nt8.17□□□□□ -1.1
UBP3Q01477 GGC1YDL198C 903 nt8.17□□□□□ -1.1
UBP3Q01477 PET20YPL159C 762 nt8.17□□□□□ -1.1
UBP3Q01477 NUP53YMR153W 1428 nt8.16□□□□□ -1.1
UBP3Q01477 PMA2YPL036W 2844 nt8.16□□□□□ -1.1
UBP3Q01477 PMT1YDL095W 2454 nt8.15□□□□□ -1.1
UBP3Q01477 CTF3YLR381W 2202 nt8.15□□□□□ -1.1 RIP-Chip
UBP3Q01477 PSP2YML017W 1782 nt8.15□□□□□ -1.1
UBP3Q01477 CPR2YHR057C 618 nt8.15□□□□□ -1.1
UBP3Q01477 TIF2YJL138C 1188 nt8.15□□□□□ -1.1 RIP-Chip
UBP3Q01477 TIF1YKR059W 1188 nt8.15□□□□□ -1.1
UBP3Q01477 MNN9YPL050C 1188 nt8.15□□□□□ -1.1
UBP3Q01477 YJL043WYJL043W 774 nt8.14□□□□□ -1.11
UBP3Q01477 SLD7YOR060C 774 nt8.14□□□□□ -1.11
UBP3Q01477 POX1YGL205W 2247 nt8.14□□□□□ -1.11
UBP3Q01477 HAC1YFL031W 717 nt8.13□□□□□ -1.11
UBP3Q01477 AOS1YPR180W 1044 nt8.13□□□□□ -1.11
UBP3Q01477 DAL7YIR031C 1665 nt8.13□□□□□ -1.11
UBP3Q01477 YIL177CYIL177C 5277 nt8.13□□□□□ -1.11
UBP3Q01477 MET13YGL125W 1803 nt8.13□□□□□ -1.11 RIP-Chip
UBP3Q01477 YAL016C-AYAL016C-A 315 nt8.12□□□□□ -1.11
UBP3Q01477 AST1YBL069W 1290 nt8.12□□□□□ -1.11
UBP3Q01477 SPR1YOR190W 1338 nt8.11□□□□□ -1.11
UBP3Q01477 PNS1YOR161C 1620 nt8.11□□□□□ -1.11
UBP3Q01477 ATG23YLR431C 1362 nt8.1□□□□□ -1.11
UBP3Q01477 RPL2AYFR031C-A 765 nt8.1□□□□□ -1.11 RIP-Chip
UBP3Q01477 HAM1YJR069C 594 nt8.1□□□□□ -1.11
UBP3Q01477 CDA1YLR307W 906 nt8.1□□□□□ -1.11
UBP3Q01477 STE3YKL178C 1413 nt8.1□□□□□ -1.11
UBP3Q01477 ADE16YLR028C 1776 nt8.1□□□□□ -1.11
UBP3Q01477 HOS2YGL194C 1359 nt8.1□□□□□ -1.11
UBP3Q01477 RRT6YGL146C 936 nt8.09□□□□□ -1.11
UBP3Q01477 KAE1YKR038C 1161 nt8.09□□□□□ -1.11
UBP3Q01477 YNR068CYNR068C 819 nt8.09□□□□□ -1.11
UBP3Q01477 AVL9YLR114C 2295 nt8.08□□□□□ -1.12
UBP3Q01477 YJL107CYJL107C 1164 nt8.08□□□□□ -1.12
UBP3Q01477 NCA3YJL116C 1014 nt8.08□□□□□ -1.12
UBP3Q01477 TES1YJR019C 1050 nt8.08□□□□□ -1.12
UBP3Q01477 AIM34YMR003W 597 nt8.08□□□□□ -1.12
UBP3Q01477 YNL295WYNL295W 1575 nt8.08□□□□□ -1.12 RIP-Chip
UBP3Q01477 FUS3YBL016W 1062 nt8.07□□□□□ -1.12
UBP3Q01477 CPT1YNL130C 1182 nt8.07□□□□□ -1.12 RIP-Chip
UBP3Q01477 ENP1YBR247C 1452 nt8.06□□□□□ -1.12
UBP3Q01477 PMT7YDR307W 1989 nt8.06□□□□□ -1.12
UBP3Q01477 RRP43YCR035C 1185 nt8.06□□□□□ -1.12
UBP3Q01477 RPL12BYDR418W 498 nt8.06□□□□□ -1.12
UBP3Q01477 AVO2YMR068W 1281 nt8.06□□□□□ -1.12
UBP3Q01477 MDH2YOL126C 1134 nt8.06□□□□□ -1.12
UBP3Q01477 CCR4YAL021C 2514 nt8.05□□□□□ -1.12
UBP3Q01477 YRF1-1YDR545W 5391 nt8.04□□□□□ -1.12
UBP3Q01477 YRF1-5YLR467W 5391 nt8.04□□□□□ -1.12
UBP3Q01477 YRF1-8YOR396W 5391 nt8.04□□□□□ -1.12
UBP3Q01477 YML034C-AYML034C-A 399 nt8.04□□□□□ -1.12
UBP3Q01477 PDC5YLR134W 1692 nt8.04□□□□□ -1.12
UBP3Q01477 PFS2YNL317W 1398 nt8.03□□□□□ -1.12
UBP3Q01477 CHA1YCL064C 1083 nt8.03□□□□□ -1.12
UBP3Q01477 YDR476CYDR476C 675 nt8.03□□□□□ -1.12
UBP3Q01477 CKB1YGL019W 837 nt8.03□□□□□ -1.12
UBP3Q01477 ERV25YML012W 636 nt8.03□□□□□ -1.12
UBP3Q01477 URE2YNL229C 1065 nt8.03□□□□□ -1.12
UBP3Q01477 ATP4YPL078C 735 nt8.03□□□□□ -1.12 RIP-Chip
UBP3Q01477 PEX28YHR150W 1740 nt8.03□□□□□ -1.12 RIP-Chip
UBP3Q01477 PET494YNR045W 1470 nt8.02□□□□□ -1.13
UBP3Q01477 YIR017W-AYIR017W-A 600 nt8.02□□□□□ -1.13
UBP3Q01477 SNA3YJL151C 402 nt8.02□□□□□ -1.13
UBP3Q01477 VPS65YLR322W 315 nt8.02□□□□□ -1.13
UBP3Q01477 HST2YPL015C 1074 nt8.02□□□□□ -1.13
UBP3Q01477 TFC6YDR362C 2019 nt8.02□□□□□ -1.13
UBP3Q01477 YGL118CYGL118C 438 nt8.01□□□□□ -1.13
UBP3Q01477 ERV2YPR037C 591 nt8.01□□□□□ -1.13 RIP-Chip
UBP3Q01477 TOP3YLR234W 1971 nt8.01□□□□□ -1.13 RIP-Chip
UBP3Q01477 YIL108WYIL108W 2091 nt8□□□□□ -1.13 RIP-Chip
UBP3Q01477 YHR033WYHR033W 1272 nt8□□□□□ -1.13
UBP3Q01477 REV7YIL139C 738 nt8□□□□□ -1.13
UBP3Q01477 HSV2YGR223C 1347 nt8□□□□□ -1.13
UBP3Q01477 CHS5YLR330W 2016 nt8□□□□□ -1.13
Retrieved 100 of 7,029 protein–RNA pairs in 11.8 ms