Protein–RNA interactions for Protein: P48061

CXCL12, Stromal cell-derived factor 1, humanhuman

Predictions only

Length 93 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12P48061 INPP4A-203ENST00000409463 1565 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CXCL12P48061 AC009831.1-201ENST00000580420 1582 ntBASIC25.56■■□□□ 1.68
CXCL12P48061 PYY2-202ENST00000441253 1076 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
CXCL12P48061 AL035685.1-201ENST00000636663 812 ntBASIC25.56■■□□□ 1.68
CXCL12P48061 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC25.56■■□□□ 1.68
CXCL12P48061 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC25.56■■□□□ 1.68
CXCL12P48061 PSMG3-202ENST00000288607 1391 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
CXCL12P48061 SLC16A8-201ENST00000320521 1878 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CXCL12P48061 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
CXCL12P48061 TBX2-AS1-203ENST00000590421 861 ntTSL 2 BASIC25.55■■□□□ 1.68
CXCL12P48061 EID2-201ENST00000390658 1629 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
CXCL12P48061 SLC16A11-201ENST00000308009 1803 ntAPPRIS P2 TSL 1 (best) BASIC25.54■■□□□ 1.68
CXCL12P48061 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
CXCL12P48061 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC25.54■■□□□ 1.68
CXCL12P48061 SSBP3-202ENST00000357475 1533 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
CXCL12P48061 EFNA1-202ENST00000368407 1926 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
CXCL12P48061 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CXCL12P48061 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CXCL12P48061 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC25.52■■□□□ 1.68
CXCL12P48061 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC25.52■■□□□ 1.68
CXCL12P48061 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC25.52■■□□□ 1.68
CXCL12P48061 SMPD5-203ENST00000639008 1464 ntBASIC25.52■■□□□ 1.68
CXCL12P48061 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC25.51■■□□□ 1.67
CXCL12P48061 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC25.51■■□□□ 1.67
CXCL12P48061 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.51■■□□□ 1.67
CXCL12P48061 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.5■■□□□ 1.67
CXCL12P48061 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CXCL12P48061 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC25.5■■□□□ 1.67
CXCL12P48061 AL451085.2-201ENST00000605085 799 ntBASIC25.5■■□□□ 1.67
CXCL12P48061 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC25.49■■□□□ 1.67
CXCL12P48061 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC25.49■■□□□ 1.67
CXCL12P48061 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC25.49■■□□□ 1.67
CXCL12P48061 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC25.49■■□□□ 1.67
CXCL12P48061 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC25.48■■□□□ 1.67
CXCL12P48061 TRIR-205ENST00000592273 783 ntTSL 3 BASIC25.48■■□□□ 1.67
CXCL12P48061 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CXCL12P48061 EMID1-201ENST00000334018 2173 ntAPPRIS P1 TSL 1 (best) BASIC25.48■■□□□ 1.67
CXCL12P48061 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC25.47■■□□□ 1.67
CXCL12P48061 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC25.47■■□□□ 1.67
CXCL12P48061 CLEC11A-201ENST00000250340 1419 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CXCL12P48061 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC25.46■■□□□ 1.67
CXCL12P48061 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC25.46■■□□□ 1.67
CXCL12P48061 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC25.45■■□□□ 1.67
CXCL12P48061 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC25.45■■□□□ 1.66
CXCL12P48061 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC25.45■■□□□ 1.66
CXCL12P48061 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC25.45■■□□□ 1.66
CXCL12P48061 PITX3-202ENST00000539804 1187 ntAPPRIS P1 TSL 5 BASIC25.45■■□□□ 1.66
CXCL12P48061 AC026202.3-201ENST00000600805 1127 ntBASIC25.45■■□□□ 1.66
CXCL12P48061 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC25.45■■□□□ 1.66
CXCL12P48061 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC25.45■■□□□ 1.66
CXCL12P48061 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC25.44■■□□□ 1.66
CXCL12P48061 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC25.44■■□□□ 1.66
CXCL12P48061 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC25.43■■□□□ 1.66
CXCL12P48061 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CXCL12P48061 BHLHE23-202ENST00000612929 1109 ntBASIC25.43■■□□□ 1.66
CXCL12P48061 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CXCL12P48061 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CXCL12P48061 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CXCL12P48061 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC25.41■■□□□ 1.66
CXCL12P48061 AL359258.2-201ENST00000564063 1566 ntBASIC25.41■■□□□ 1.66
CXCL12P48061 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC25.41■■□□□ 1.66
CXCL12P48061 NSMCE4A-201ENST00000369017 1224 ntTSL 1 (best) BASIC25.41■■□□□ 1.66
CXCL12P48061 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC25.41■■□□□ 1.66
CXCL12P48061 ADAMTS13-203ENST00000371910 1074 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CXCL12P48061 E2F4-201ENST00000379378 2096 ntAPPRIS P1 TSL 1 (best) BASIC25.4■■□□□ 1.66
CXCL12P48061 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC25.39■■□□□ 1.66
CXCL12P48061 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC25.39■■□□□ 1.66
CXCL12P48061 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC25.39■■□□□ 1.66
CXCL12P48061 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC25.39■■□□□ 1.66
CXCL12P48061 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC25.39■■□□□ 1.65
CXCL12P48061 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC25.38■■□□□ 1.65
CXCL12P48061 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CXCL12P48061 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CXCL12P48061 DUX4L9-201ENST00000449051 1259 ntBASIC25.38■■□□□ 1.65
CXCL12P48061 AC104002.3-202ENST00000557170 1100 ntTSL 3 BASIC25.38■■□□□ 1.65
CXCL12P48061 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC25.38■■□□□ 1.65
CXCL12P48061 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC25.38■■□□□ 1.65
CXCL12P48061 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC25.37■■□□□ 1.65
CXCL12P48061 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.37■■□□□ 1.65
CXCL12P48061 GPR25-201ENST00000304244 1224 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
CXCL12P48061 AC074183.2-201ENST00000623112 922 ntBASIC25.37■■□□□ 1.65
CXCL12P48061 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CXCL12P48061 AL592295.1-201ENST00000400984 884 ntBASIC25.36■■□□□ 1.65
CXCL12P48061 AC055876.1-201ENST00000430589 895 ntTSL 2 BASIC25.36■■□□□ 1.65
CXCL12P48061 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC25.36■■□□□ 1.65
CXCL12P48061 RP9P-202ENST00000450133 1212 ntBASIC25.35■■□□□ 1.65
CXCL12P48061 AC010980.1-201ENST00000587192 1142 ntBASIC25.35■■□□□ 1.65
CXCL12P48061 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC25.35■■□□□ 1.65
CXCL12P48061 QDPR-202ENST00000428702 1278 ntTSL 2 BASIC25.34■■□□□ 1.65
CXCL12P48061 AC025884.2-201ENST00000553429 711 ntBASIC25.34■■□□□ 1.65
CXCL12P48061 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC25.34■■□□□ 1.65
CXCL12P48061 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC25.34■■□□□ 1.65
CXCL12P48061 TXNRD2-205ENST00000400525 1874 ntTSL 5 BASIC25.34■■□□□ 1.65
CXCL12P48061 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC25.33■■□□□ 1.65
CXCL12P48061 AC092647.5-201ENST00000426595 1732 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
CXCL12P48061 CDKN2A-214ENST00000579755 1283 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CXCL12P48061 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC25.33■■□□□ 1.65
CXCL12P48061 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC25.32■■□□□ 1.64
CXCL12P48061 BCAP31-201ENST00000345046 1589 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CXCL12P48061 KDM4C-203ENST00000401787 1406 ntTSL 1 (best) BASIC25.32■■□□□ 1.64
Retrieved 100 of 98,524 protein–RNA pairs in 25.6 ms