Protein–RNA interactions for Protein: P29400

COL4A5, Collagen alpha-5(IV) chain, humanhuman

Predictions only

Length 1,685 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A5P29400 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC31.01■■■□□ 2.55
COL4A5P29400 ATXN3-252ENST00000620536 1044 ntTSL 5 BASIC31.01■■■□□ 2.55
COL4A5P29400 ATXN3-253ENST00000621269 936 ntTSL 5 BASIC31.01■■■□□ 2.55
COL4A5P29400 WDR86-204ENST00000477459 1428 ntTSL 2 BASIC31.01■■■□□ 2.55
COL4A5P29400 CAPNS1-204ENST00000587718 1558 ntAPPRIS ALT2 TSL 1 (best) BASIC31.01■■■□□ 2.55
COL4A5P29400 DUX4L18-201ENST00000553347 1267 ntBASIC31■■■□□ 2.55
COL4A5P29400 TMEM150A-202ENST00000334462 1518 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL4A5P29400 MEST-211ENST00000437945 1455 ntTSL 5 BASIC30.99■■■□□ 2.55
COL4A5P29400 PTGER1-201ENST00000292513 1421 ntAPPRIS P1 TSL 1 (best) BASIC30.99■■■□□ 2.55
COL4A5P29400 RPL27A-206ENST00000530022 878 ntTSL 1 (best) BASIC30.99■■■□□ 2.55
COL4A5P29400 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC30.98■■■□□ 2.55
COL4A5P29400 SLC35D2-201ENST00000253270 1613 ntAPPRIS P1 TSL 1 (best) BASIC30.98■■■□□ 2.55
COL4A5P29400 RUNX2-205ENST00000465038 1770 ntAPPRIS P4 TSL 5 BASIC30.97■■■□□ 2.55
COL4A5P29400 GSR-205ENST00000541648 1410 ntTSL 1 (best) BASIC30.97■■■□□ 2.55
COL4A5P29400 LTC4S-205ENST00000486713 496 ntTSL 2 BASIC30.97■■■□□ 2.55
COL4A5P29400 ITPKA-201ENST00000260386 1824 ntAPPRIS P1 TSL 1 (best) BASIC30.96■■■□□ 2.55
COL4A5P29400 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC30.96■■■□□ 2.55
COL4A5P29400 DHRS13-203ENST00000426464 1569 ntTSL 2 BASIC30.95■■■□□ 2.55
COL4A5P29400 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC30.95■■■□□ 2.55
COL4A5P29400 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.55
COL4A5P29400 C16orf52-207ENST00000569656 1257 ntTSL 5 BASIC30.95■■■□□ 2.55
COL4A5P29400 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC30.95■■■□□ 2.54
COL4A5P29400 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC30.94■■■□□ 2.54
COL4A5P29400 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC30.94■■■□□ 2.54
COL4A5P29400 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL4A5P29400 AC126177.7-201ENST00000547904 679 ntBASIC30.93■■■□□ 2.54
COL4A5P29400 KCNG2-201ENST00000316249 1401 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL4A5P29400 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL4A5P29400 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC30.93■■■□□ 2.54
COL4A5P29400 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC30.93■■■□□ 2.54
COL4A5P29400 LMNTD2-201ENST00000329451 2084 ntAPPRIS P1 TSL 1 (best) BASIC30.92■■■□□ 2.54
COL4A5P29400 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC30.92■■■□□ 2.54
COL4A5P29400 AC133552.2-201ENST00000619106 1032 ntBASIC30.92■■■□□ 2.54
COL4A5P29400 NKIRAS2-208ENST00000462043 585 ntTSL 4 BASIC30.91■■■□□ 2.54
COL4A5P29400 TRIR-205ENST00000592273 783 ntTSL 3 BASIC30.91■■■□□ 2.54
COL4A5P29400 AC027237.3-202ENST00000558617 1778 ntTSL 2 BASIC30.91■■■□□ 2.54
COL4A5P29400 HSPE1-201ENST00000233893 950 ntAPPRIS P1 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL4A5P29400 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC30.9■■■□□ 2.54
COL4A5P29400 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
COL4A5P29400 RSPO4-202ENST00000400634 722 ntTSL 1 (best) BASIC30.9■■■□□ 2.54
COL4A5P29400 DEXI-202ENST00000469379 1393 ntAPPRIS P1 TSL 2 BASIC30.89■■■□□ 2.54
COL4A5P29400 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A5P29400 LY6H-201ENST00000342752 951 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A5P29400 LY6H-202ENST00000414417 1056 ntAPPRIS ALT2 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A5P29400 LY6H-203ENST00000430474 925 ntAPPRIS P3 TSL 3 BASIC30.89■■■□□ 2.54
COL4A5P29400 HSPB6-202ENST00000587965 711 ntTSL 2 BASIC30.89■■■□□ 2.54
COL4A5P29400 ABHD17B-202ENST00000377041 1312 ntAPPRIS P4 TSL 1 (best) BASIC30.89■■■□□ 2.54
COL4A5P29400 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC30.89■■■□□ 2.54
COL4A5P29400 VIPR2-204ENST00000421760 717 ntTSL 3 BASIC30.88■■■□□ 2.53
COL4A5P29400 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC30.88■■■□□ 2.53
COL4A5P29400 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC30.87■■■□□ 2.53
COL4A5P29400 PRELID2-207ENST00000511435 1894 ntAPPRIS ALT1 TSL 2 BASIC30.86■■■□□ 2.53
COL4A5P29400 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC30.86■■■□□ 2.53
COL4A5P29400 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
COL4A5P29400 DUX4L9-201ENST00000449051 1259 ntBASIC30.85■■■□□ 2.53
COL4A5P29400 RASSF8-202ENST00000381352 2320 ntTSL 1 (best) BASIC30.85■■■□□ 2.53
COL4A5P29400 TYMP-201ENST00000252029 1630 ntAPPRIS P3 TSL 1 (best) BASIC30.85■■■□□ 2.53
COL4A5P29400 IRX1-201ENST00000302006 1858 ntAPPRIS P1 TSL 1 (best) BASIC30.84■■■□□ 2.53
COL4A5P29400 AL121987.2-201ENST00000418602 1578 ntTSL 2 BASIC30.84■■■□□ 2.53
COL4A5P29400 MAFA-201ENST00000333480 2347 ntAPPRIS P1 BASIC30.84■■■□□ 2.53
COL4A5P29400 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC30.84■■■□□ 2.53
COL4A5P29400 AC093390.2-201ENST00000638628 1007 ntTSL 5 BASIC30.84■■■□□ 2.53
COL4A5P29400 WSB2-211ENST00000544233 2503 ntTSL 2 BASIC30.83■■■□□ 2.53
COL4A5P29400 REST-210ENST00000638187 1334 ntTSL 5 BASIC30.83■■■□□ 2.53
COL4A5P29400 CIB2-201ENST00000258930 1598 ntAPPRIS P1 TSL 1 (best) BASIC30.83■■■□□ 2.53
COL4A5P29400 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC30.83■■■□□ 2.53
COL4A5P29400 SPCS2P3-201ENST00000500401 656 ntBASIC30.83■■■□□ 2.53
COL4A5P29400 AC026202.3-201ENST00000600805 1127 ntBASIC30.83■■■□□ 2.53
COL4A5P29400 RPUSD1-208ENST00000567114 1835 ntTSL 2 BASIC30.82■■■□□ 2.52
COL4A5P29400 AC025884.2-201ENST00000553429 711 ntBASIC30.81■■■□□ 2.52
COL4A5P29400 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC30.81■■■□□ 2.52
COL4A5P29400 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC30.81■■■□□ 2.52
COL4A5P29400 SHISA8-202ENST00000621082 1405 ntAPPRIS P2 TSL 5 BASIC30.8■■■□□ 2.52
COL4A5P29400 SLC25A23-203ENST00000334510 1424 ntTSL 1 (best) BASIC30.8■■■□□ 2.52
COL4A5P29400 PSMG4-206ENST00000438998 838 ntAPPRIS P1 TSL 2 BASIC30.8■■■□□ 2.52
COL4A5P29400 ATPAF1-202ENST00000371937 1827 ntAPPRIS P1 TSL 1 (best) BASIC30.8■■■□□ 2.52
COL4A5P29400 AL592295.1-201ENST00000400984 884 ntBASIC30.79■■■□□ 2.52
COL4A5P29400 AC010907.1-201ENST00000441632 807 ntTSL 3 BASIC30.79■■■□□ 2.52
COL4A5P29400 SOWAHD-201ENST00000343905 1552 ntAPPRIS P1 BASIC30.79■■■□□ 2.52
COL4A5P29400 MAPK3-203ENST00000395199 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL4A5P29400 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC30.78■■■□□ 2.52
COL4A5P29400 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
COL4A5P29400 MRPL4-201ENST00000253099 1455 ntAPPRIS P2 TSL 1 (best) BASIC30.77■■■□□ 2.52
COL4A5P29400 CIB2-202ENST00000539011 1511 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
COL4A5P29400 PTRH1-208ENST00000543175 814 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL4A5P29400 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC30.76■■■□□ 2.51
COL4A5P29400 PROCA1-201ENST00000301039 1566 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A5P29400 ANAPC13-201ENST00000354910 1209 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A5P29400 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC30.75■■■□□ 2.51
COL4A5P29400 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC30.75■■■□□ 2.51
COL4A5P29400 SMPD5-203ENST00000639008 1464 ntBASIC30.75■■■□□ 2.51
COL4A5P29400 LDLRAD4-218ENST00000592991 1640 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
COL4A5P29400 RAD51-208ENST00000532743 1515 ntTSL 2 BASIC30.74■■■□□ 2.51
COL4A5P29400 AC053527.1-201ENST00000502790 685 ntTSL 3 BASIC30.74■■■□□ 2.51
COL4A5P29400 TUSC1-201ENST00000358022 2052 ntAPPRIS P1 BASIC30.74■■■□□ 2.51
COL4A5P29400 GNPTG-204ENST00000527137 386 ntTSL 2 BASIC30.74■■■□□ 2.51
COL4A5P29400 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
COL4A5P29400 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC30.73■■■□□ 2.51
COL4A5P29400 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC30.73■■■□□ 2.51
COL4A5P29400 RAP2CP1-202ENST00000605179 643 ntBASIC30.73■■■□□ 2.51
Retrieved 100 of 98,524 protein–RNA pairs in 32.1 ms