Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
CXCL1P09341 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC19.48■□□□□ 0.71
CXCL1P09341 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.48■□□□□ 0.71
CXCL1P09341 CTBP2-211ENST00000494626 2014 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 DYNLL1-208ENST00000550178 581 ntBASIC19.48■□□□□ 0.71
CXCL1P09341 CBLN2-209ENST00000585159 2406 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 RABL6-202ENST00000357466 1820 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
CXCL1P09341 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL1P09341 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL1P09341 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
CXCL1P09341 TSEN34-204ENST00000429671 1912 ntTSL 2 BASIC19.47■□□□□ 0.71
CXCL1P09341 PCYT2-203ENST00000538936 5147 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 APLP1-201ENST00000221891 2495 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
CXCL1P09341 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
CXCL1P09341 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.46■□□□□ 0.71
CXCL1P09341 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL1P09341 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
CXCL1P09341 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL1P09341 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
CXCL1P09341 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.45■□□□□ 0.7
CXCL1P09341 GLRX5-201ENST00000331334 1564 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL1P09341 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC19.44■□□□□ 0.7
CXCL1P09341 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL1P09341 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC19.44■□□□□ 0.7
CXCL1P09341 GATA4-209ENST00000622443 1982 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL1P09341 RNPEP-202ENST00000367286 2282 ntTSL 5 BASIC19.44■□□□□ 0.7
CXCL1P09341 FEZ2-203ENST00000379245 2097 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
CXCL1P09341 FZD9-201ENST00000344575 2338 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CXCL1P09341 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
CXCL1P09341 F8A3-201ENST00000622749 1759 ntAPPRIS P1 BASIC19.43■□□□□ 0.7
CXCL1P09341 RNF166-201ENST00000312838 1883 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 DLX2-202ENST00000466293 1852 ntTSL 2 BASIC19.42■□□□□ 0.7
CXCL1P09341 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.42■□□□□ 0.7
CXCL1P09341 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC19.41■□□□□ 0.7
CXCL1P09341 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL1P09341 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CXCL1P09341 MARCH11-201ENST00000332432 1741 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CXCL1P09341 WRNIP1-205ENST00000618555 2651 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CXCL1P09341 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC19.41■□□□□ 0.7
CXCL1P09341 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC19.4■□□□□ 0.7
CXCL1P09341 HMGB1-205ENST00000399494 1282 ntAPPRIS P1 TSL 2 BASIC19.4■□□□□ 0.7
CXCL1P09341 OPN3-201ENST00000366554 2620 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CXCL1P09341 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CXCL1P09341 AC012676.1-201ENST00000574705 1949 ntBASIC19.39■□□□□ 0.7
CXCL1P09341 FCRLB-205ENST00000367948 1977 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.7
CXCL1P09341 ATG16L2-201ENST00000321297 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL1P09341 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL1P09341 PPP1CC-208ENST00000551676 1581 ntTSL 2 BASIC19.39■□□□□ 0.69
CXCL1P09341 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CXCL1P09341 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 CNNM2-201ENST00000369875 2059 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 GALNT12-201ENST00000375011 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 GUSB-202ENST00000421103 1742 ntTSL 2 BASIC19.38■□□□□ 0.69
CXCL1P09341 ZNF639-209ENST00000496856 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CXCL1P09341 FNDC11-204ENST00000615526 2954 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CXCL1P09341 CLDND1-202ENST00000394180 2228 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 CARS2-201ENST00000257347 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 AL031258.1-201ENST00000623562 325 ntBASIC19.37■□□□□ 0.69
CXCL1P09341 SLBP-206ENST00000489418 1977 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CXCL1P09341 CCDC136-206ENST00000464832 1720 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
CXCL1P09341 PCSK6-220ENST00000622483 3132 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CXCL1P09341 PDE10A-205ENST00000616273 2118 ntTSL 2 BASIC19.36■□□□□ 0.69
CXCL1P09341 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC19.36■□□□□ 0.69
CXCL1P09341 DERA-201ENST00000428559 1705 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
CXCL1P09341 DHFR-203ENST00000505337 1719 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
CXCL1P09341 AMZ2-201ENST00000359783 1722 ntTSL 5 BASIC19.35■□□□□ 0.69
CXCL1P09341 SSBP4-206ENST00000599699 793 ntTSL 2 BASIC19.35■□□□□ 0.69
CXCL1P09341 SLC35A1-203ENST00000369557 1653 ntTSL 2 BASIC19.35■□□□□ 0.69
CXCL1P09341 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.35■□□□□ 0.69
CXCL1P09341 NPTXR-202ENST00000640136 1503 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
CXCL1P09341 CEBPA-AS1-201ENST00000592982 2198 ntBASIC19.34■□□□□ 0.69
CXCL1P09341 FAM89B-201ENST00000316409 1409 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
CXCL1P09341 LYPLA1-215ENST00000618914 2482 ntTSL 5 BASIC19.34■□□□□ 0.69
CXCL1P09341 CLDN5-201ENST00000403084 2357 ntBASIC19.34■□□□□ 0.69
CXCL1P09341 LINC00588-201ENST00000521663 1875 ntTSL 2 BASIC19.34■□□□□ 0.69
CXCL1P09341 LINC00543-201ENST00000567234 1845 ntBASIC19.34■□□□□ 0.69
CXCL1P09341 AP001107.7-201ENST00000533287 272 ntTSL 2 BASIC19.33■□□□□ 0.68
CXCL1P09341 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC19.33■□□□□ 0.68
CXCL1P09341 BAMBI-201ENST00000375533 1877 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL1P09341 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
CXCL1P09341 TMEM202-AS1-202ENST00000565181 2325 ntBASIC19.33■□□□□ 0.68
CXCL1P09341 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL1P09341 CGREF1-204ENST00000402550 1575 ntTSL 2 BASIC19.32■□□□□ 0.68
CXCL1P09341 MKNK2-202ENST00000309340 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL1P09341 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
CXCL1P09341 FLT1-202ENST00000539099 1911 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL1P09341 MBD3-202ENST00000434436 2439 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL1P09341 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
CXCL1P09341 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
CXCL1P09341 FBXL8-201ENST00000258200 1658 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms