RNA–Protein interactions for RNA: YNL293W

MSB3, Transcript of Rab GTPase-activating protein, yeast

Gene MSB3, Length 1,902 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
MSB3	YNL293W	RQC2	Q12532	1038 aa	Known RBP	11.47	□□□□□ -0.57
MSB3	YNL293W	BFR2	Q06631	534 aa	Known RBP	11.44	□□□□□ -0.58
MSB3	YNL293W	NOP2	P40991	618 aa	Known RBP	10.48	□□□□□ -0.73
MSB3	YNL293W	URN1	Q06525	465 aa	Known RBP	10.36	□□□□□ -0.75
MSB3	YNL293W	EBP2	P36049	427 aa	Known RBP	10.31	□□□□□ -0.76
MSB3	YNL293W	CAB3	P36076	571 aa		10.3	□□□□□ -0.76
MSB3	YNL293W	SIS2	P36024	562 aa		10.14	□□□□□ -0.79
MSB3	YNL293W	TAF7	Q05021	590 aa		10.14	□□□□□ -0.79
MSB3	YNL293W	NSR1	P27476	414 aa	Known RBP RIP-Chip data	9.99	□□□□□ -0.81	not detected
MSB3	YNL293W	YFR016C	P43597	1233 aa	Known RBP	9.78	□□□□□ -0.84
MSB3	YNL293W	YPR148C	Q06523	435 aa		9.78	□□□□□ -0.84
MSB3	YNL293W	AVT3	P36062	692 aa		9.74	□□□□□ -0.85
MSB3	YNL293W	RPS0B	P46654	252 aa	Known RBP	9.63	□□□□□ -0.87
MSB3	YNL293W	SKI3	P17883	1432 aa	Known RBP	9.59	□□□□□ -0.87
MSB3	YNL293W	TCB2	P48231	1178 aa		9.46	□□□□□ -0.9
MSB3	YNL293W	YRB30	P53107	440 aa	Predicted RBP	9.46	□□□□□ -0.9
MSB3	YNL293W	DIP2	Q12220	943 aa	Predicted RBP	9.44	□□□□□ -0.9
MSB3	YNL293W	KRI1	P42846	591 aa	Known RBP	9.43	□□□□□ -0.9
MSB3	YNL293W	CWC22	P53333	577 aa	Known RBP	9.42	□□□□□ -0.9
MSB3	YNL293W	SPA2	P23201	1466 aa	Known RBP	9.39	□□□□□ -0.91
MSB3	YNL293W	MNN4	P36044	1178 aa		9.35	□□□□□ -0.91
MSB3	YNL293W	ENP1	P38333	483 aa	Known RBP	9.31	□□□□□ -0.92
MSB3	YNL293W	RSE1	Q04693	1361 aa	Known RBP	9.28	□□□□□ -0.92
MSB3	YNL293W	DEF1	P35732	738 aa	Known RBP	9.25	□□□□□ -0.93
MSB3	YNL293W	LEO1	P38439	464 aa		9.25	□□□□□ -0.93
MSB3	YNL293W	AIM44	Q99299	758 aa		9.24	□□□□□ -0.93
MSB3	YNL293W	TCB3	Q03640	1545 aa	Known RBP	9.21	□□□□□ -0.93
MSB3	YNL293W	ENV11	P53246	860 aa		9.21	□□□□□ -0.93
MSB3	YNL293W	RLF2	Q12495	606 aa		9.21	□□□□□ -0.93
MSB3	YNL293W	QCR6	P00127	147 aa		9.21	□□□□□ -0.94
MSB3	YNL293W	NOP53	Q12080	455 aa	Known RBP	9.2	□□□□□ -0.94
MSB3	YNL293W	NUG1	P40010	520 aa	Known RBP	9.19	□□□□□ -0.94
MSB3	YNL293W	TFA1	P36100	482 aa		9.19	□□□□□ -0.94
MSB3	YNL293W	CLC1	P17891	233 aa		9.17	□□□□□ -0.94
MSB3	YNL293W	SEC3	P33332	1336 aa	Known RBP	9.14	□□□□□ -0.95
MSB3	YNL293W	SSN2	P38931	1420 aa		9.14	□□□□□ -0.95
MSB3	YNL293W	NAP1	P25293	417 aa	Known RBP	9.13	□□□□□ -0.95
MSB3	YNL293W	FPR3	P38911	411 aa	Known RBP	9.13	□□□□□ -0.95
MSB3	YNL293W	YGR130C	P53278	816 aa		9.13	□□□□□ -0.95
MSB3	YNL293W	SPT7	P35177	1332 aa		9.12	□□□□□ -0.95
MSB3	YNL293W	SGS1	P35187	1447 aa		9.1	□□□□□ -0.95
MSB3	YNL293W	PSH1	Q12161	406 aa		9.07	□□□□□ -0.96
MSB3	YNL293W	IME2	P32581	645 aa		9.07	□□□□□ -0.96
MSB3	YNL293W	IOC4	Q04213	475 aa		9.06	□□□□□ -0.96
MSB3	YNL293W	SPT21	P35209	758 aa		9.04	□□□□□ -0.96
MSB3	YNL293W	STH1	P32597	1359 aa		9.04	□□□□□ -0.96
MSB3	YNL293W	RNA1	P11745	407 aa	Known RBP	9.03	□□□□□ -0.96
MSB3	YNL293W	SPT2	P06843	333 aa	Predicted RBP	9.03	□□□□□ -0.96
MSB3	YNL293W	FPR4	Q06205	392 aa	Predicted RBP	9.03	□□□□□ -0.96
MSB3	YNL293W	RIX1	P38883	763 aa	Predicted RBP	9.01	□□□□□ -0.97
MSB3	YNL293W	HSP82	P02829	709 aa	Known RBP	8.97	□□□□□ -0.97
MSB3	YNL293W	FUN12	P39730	1002 aa	Known RBP	8.96	□□□□□ -0.97
MSB3	YNL293W	FAP1	P53971	965 aa		8.95	□□□□□ -0.98
MSB3	YNL293W	PLP2	Q12017	286 aa		8.95	□□□□□ -0.98
MSB3	YNL293W	DRS1	P32892	752 aa	Known RBP	8.95	□□□□□ -0.98
MSB3	YNL293W	PRS1	P32895	427 aa	Known RBP	8.93	□□□□□ -0.98
MSB3	YNL293W	SPC110	P32380	944 aa		8.92	□□□□□ -0.98
MSB3	YNL293W	EAF7	P53911	425 aa	Known RBP	8.92	□□□□□ -0.98
MSB3	YNL293W	YTA7	P40340	1379 aa		8.91	□□□□□ -0.98
MSB3	YNL293W	NMD2	P38798	1089 aa	Known RBP	8.9	□□□□□ -0.99
MSB3	YNL293W	RLP24	Q07915	199 aa	Known RBP	8.9	□□□□□ -0.99
MSB3	YNL293W	OPY1	P38271	328 aa		8.89	□□□□□ -0.99
MSB3	YNL293W	MTC1	P47018	478 aa	Known RBP	8.89	□□□□□ -0.99
MSB3	YNL293W	INO80	P53115	1489 aa		8.87	□□□□□ -0.99
MSB3	YNL293W	POL5	P39985	1022 aa	Known RBP	8.86	□□□□□ -0.99
MSB3	YNL293W	SAS10	Q12136	610 aa	Predicted RBP	8.86	□□□□□ -0.99
MSB3	YNL293W	YNL011C	P53980	444 aa		8.84	□□□□□ -1
MSB3	YNL293W	RPN1	P38764	993 aa	Known RBP	8.83	□□□□□ -1
MSB3	YNL293W	PAF1	P38351	445 aa		8.82	□□□□□ -1
MSB3	YNL293W	PIL1	P53252	339 aa	Known RBP	8.82	□□□□□ -1
MSB3	YNL293W	IFH1	P39520	1085 aa		8.81	□□□□□ -1
MSB3	YNL293W	SNF7	P39929	240 aa	Known RBP	8.81	□□□□□ -1
MSB3	YNL293W	VPS4	P52917	437 aa		8.8	□□□□□ -1
MSB3	YNL293W	SNU71	P53207	620 aa	Known RBP	8.79	□□□□□ -1
MSB3	YNL293W	UFD4	P33202	1483 aa		8.78	□□□□□ -1
MSB3	YNL293W	ECM5	Q03214	1411 aa		8.78	□□□□□ -1
MSB3	YNL293W	MMS22	Q06164	1454 aa		8.77	□□□□□ -1.01
MSB3	YNL293W	SPP41	P38904	1435 aa		8.76	□□□□□ -1.01
MSB3	YNL293W	GRX3	Q03835	250 aa		8.76	□□□□□ -1.01
MSB3	YNL293W	RPC31	P17890	251 aa		8.75	□□□□□ -1.01
MSB3	YNL293W	CHD1	P32657	1468 aa		8.75	□□□□□ -1.01
MSB3	YNL293W	CFT1	Q06632	1357 aa	Known RBP	8.74	□□□□□ -1.01
MSB3	YNL293W	MSH4	P40965	878 aa	Predicted RBP	8.73	□□□□□ -1.01
MSB3	YNL293W	ETT1	Q08421	412 aa	Known RBP	8.73	□□□□□ -1.01
MSB3	YNL293W	NOP58	Q12499	511 aa	Known RBP	8.73	□□□□□ -1.01
MSB3	YNL293W	TOP1	P04786	769 aa		8.72	□□□□□ -1.01
MSB3	YNL293W	RAD26	P40352	1085 aa		8.72	□□□□□ -1.01
MSB3	YNL293W	SMC3	P47037	1230 aa		8.72	□□□□□ -1.01
MSB3	YNL293W	MDG1	P53885	366 aa		8.72	□□□□□ -1.01
MSB3	YNL293W	CTR9	P89105	1077 aa		8.72	□□□□□ -1.01
MSB3	YNL293W	RPS0A	P32905	252 aa	Known RBP	8.71	□□□□□ -1.02
MSB3	YNL293W	NNF2	P53253	936 aa		8.71	□□□□□ -1.02
MSB3	YNL293W	TIF4632	P39936	914 aa	Known RBP	8.7	□□□□□ -1.02
MSB3	YNL293W	SWE1	P32944	819 aa		8.69	□□□□□ -1.02
MSB3	YNL293W	DOS2	P54858	310 aa		8.69	□□□□□ -1.02
MSB3	YNL293W	ROX1	P25042	368 aa		8.68	□□□□□ -1.02
MSB3	YNL293W	MSH3	P25336	1018 aa		8.68	□□□□□ -1.02
MSB3	YNL293W	SIC1	P38634	284 aa		8.68	□□□□□ -1.02
MSB3	YNL293W	XRN1	P22147	1528 aa	Known RBP	8.66	□□□□□ -1.02
MSB3	YNL293W	BYE1	P36106	594 aa		8.65	□□□□□ -1.02

Retrieved 100 of 5,963 RNA–protein pairs in 12.1 ms