RNA–Protein interactions for RNA: ENST00000640076.1

SCARB2-220, Transcript of scavenger receptor class B member 2, humanhuman

TSL 2

Gene SCARB2, Length 1,991 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARB2-220ENST00000640076 CHIC1Q5VXU3 224 aa19.07■□□□□ 0.64
SCARB2-220ENST00000640076 NISCHQ9Y2I1 1504 aa18.42■□□□□ 0.54
SCARB2-220ENST00000640076 AEBP2Q6ZN18 517 aaPredicted RBP18.21■□□□□ 0.51
SCARB2-220ENST00000640076 PHF23Q9BUL5 403 aaPredicted RBP16.97■□□□□ 0.31
SCARB2-220ENST00000640076 EHMT2Q96KQ7 1210 aa16.2■□□□□ 0.18
SCARB2-220ENST00000640076 CCDC180Q9P1Z9 1646 aa16.18■□□□□ 0.18
SCARB2-220ENST00000640076 PLPPR3Q6T4P5 718 aa16.07■□□□□ 0.16
SCARB2-220ENST00000640076 SLC24A1O60721 1099 aa15.87■□□□□ 0.13
SCARB2-220ENST00000640076 KCNA4P22459 653 aa15.59■□□□□ 0.09
SCARB2-220ENST00000640076 ABCC9O60706 1549 aa15.47■□□□□ 0.07
SCARB2-220ENST00000640076 ZCCHC6Q5VYS8 1495 aaKnown RBP15.43■□□□□ 0.06
SCARB2-220ENST00000640076 CSRNP3Q8WYN3 585 aa15.42■□□□□ 0.06
SCARB2-220ENST00000640076 DCAF1Q9Y4B6 1507 aa15.25■□□□□ 0.03
SCARB2-220ENST00000640076 DCAF8L2P0C7V8 631 aa15.22■□□□□ 0.03
SCARB2-220ENST00000640076 SENP3Q9H4L4 574 aaPredicted RBP15.16■□□□□ 0.02
SCARB2-220ENST00000640076 MYO15BQ96JP2 1530 aa15.16■□□□□ 0.02
SCARB2-220ENST00000640076 NACADO15069 1562 aa15.12■□□□□ 0.01
SCARB2-220ENST00000640076 ADRA2BP18089 450 aa15.05■□□□□ 0
SCARB2-220ENST00000640076 SLC4A1APQ9BWU0 796 aaKnown RBP15.05■□□□□ -0
SCARB2-220ENST00000640076 RTN4Q9NQC3 1192 aaKnown RBP15.04■□□□□ -0
SCARB2-220ENST00000640076 RB1CC1Q8TDY2 1594 aa15.04■□□□□ -0
SCARB2-220ENST00000640076 AMER1Q5JTC6 1135 aaPredicted RBP14.97□□□□□ -0.01
SCARB2-220ENST00000640076 SCRIBQ14160 1630 aa14.82□□□□□ -0.04
SCARB2-220ENST00000640076 SHROOM4Q9ULL8 1493 aa14.81□□□□□ -0.04
SCARB2-220ENST00000640076 UNC13AQ9UPW8 1703 aa14.73□□□□□ -0.05
SCARB2-220ENST00000640076 BICRAQ9NZM4 1560 aa14.6□□□□□ -0.07
SCARB2-220ENST00000640076 PABPN1Q86U42 306 aaKnown RBP eCLIP14.53□□□□□ -0.08
SCARB2-220ENST00000640076 PPP6R1Q9UPN7 881 aa14.53□□□□□ -0.08
SCARB2-220ENST00000640076 ZBTB22O15209 634 aa14.4□□□□□ -0.1
SCARB2-220ENST00000640076 PPP4R3CPQ6ZMV5 832 aa14.34□□□□□ -0.11
SCARB2-220ENST00000640076 NCBP3Q53F19 620 aaKnown RBP14.32□□□□□ -0.12
SCARB2-220ENST00000640076 CECR2Q9BXF3 1484 aa14.31□□□□□ -0.12
SCARB2-220ENST00000640076 BAZ1AQ9NRL2 1556 aaPredicted RBP14.24□□□□□ -0.13
SCARB2-220ENST00000640076 MROH2BQ7Z745 1585 aa14.21□□□□□ -0.13
SCARB2-220ENST00000640076 SMARCA4P51532 1647 aa14.21□□□□□ -0.13
SCARB2-220ENST00000640076 RSF1Q96T23 1441 aaPredicted RBP14.19□□□□□ -0.14
SCARB2-220ENST00000640076 NPM3O75607 178 aaKnown RBP14.17□□□□□ -0.14
SCARB2-220ENST00000640076 EIF4G1Q04637 1599 aaKnown RBP14.17□□□□□ -0.14
SCARB2-220ENST00000640076 SUPT5HO00267 1087 aaKnown RBP14.13□□□□□ -0.15
SCARB2-220ENST00000640076 WIZO95785 1651 aa14.08□□□□□ -0.16
SCARB2-220ENST00000640076 PEG3Q9GZU2 1588 aa14.06□□□□□ -0.16
SCARB2-220ENST00000640076 ATAD2BQ9ULI0 1458 aa14.03□□□□□ -0.16
SCARB2-220ENST00000640076 SMARCA2P51531 1590 aa14.02□□□□□ -0.16
SCARB2-220ENST00000640076 CC2D2AQ9P2K1 1620 aa14.01□□□□□ -0.17
SCARB2-220ENST00000640076 NCAPD3P42695 1498 aa13.96□□□□□ -0.18
SCARB2-220ENST00000640076 FOXD1Q16676 465 aa13.95□□□□□ -0.18
SCARB2-220ENST00000640076 TOP2AP11388 1531 aaKnown RBP13.94□□□□□ -0.18
SCARB2-220ENST00000640076 BAZ1BQ9UIG0 1483 aaKnown RBP13.93□□□□□ -0.18
SCARB2-220ENST00000640076 HMGXB3Q12766 1538 aa13.92□□□□□ -0.18
SCARB2-220ENST00000640076 FOXD4L1Q9NU39 408 aa13.91□□□□□ -0.18
SCARB2-220ENST00000640076 DNAJC5BQ9UF47 199 aa13.85□□□□□ -0.19
SCARB2-220ENST00000640076 PRKCSHP14314 528 aaPredicted RBP13.85□□□□□ -0.19
SCARB2-220ENST00000640076 FKBP8Q14318 412 aa13.82□□□□□ -0.2
SCARB2-220ENST00000640076 CCDC88BA6NC98 1476 aa13.78□□□□□ -0.2
SCARB2-220ENST00000640076 PLCB2Q00722 1185 aa13.74□□□□□ -0.21
SCARB2-220ENST00000640076 BCANQ96GW7 911 aa13.73□□□□□ -0.21
SCARB2-220ENST00000640076 TAOK2Q9UL54 1235 aa13.7□□□□□ -0.22
SCARB2-220ENST00000640076 DAXXQ9UER7 740 aaPredicted RBP13.67□□□□□ -0.22
SCARB2-220ENST00000640076 CNKSR2Q8WXI2 1034 aa13.63□□□□□ -0.23
SCARB2-220ENST00000640076 CFTRP13569 1480 aa13.58□□□□□ -0.24
SCARB2-220ENST00000640076 CADPSQ9ULU8 1353 aa13.57□□□□□ -0.24
SCARB2-220ENST00000640076 HAP1P54257 671 aaPredicted RBP13.52□□□□□ -0.24
SCARB2-220ENST00000640076 LAMC3Q9Y6N6 1575 aa13.52□□□□□ -0.25
SCARB2-220ENST00000640076 NESP48681 1621 aa13.51□□□□□ -0.25
SCARB2-220ENST00000640076 PRDM2Q13029 1718 aa13.5□□□□□ -0.25
SCARB2-220ENST00000640076 POTEDQ86YR6 584 aa13.5□□□□□ -0.25
SCARB2-220ENST00000640076 PIAS4Q8N2W9 510 aaPredicted RBP13.46□□□□□ -0.25
SCARB2-220ENST00000640076 TPRNQ4KMQ1 711 aa13.43□□□□□ -0.26
SCARB2-220ENST00000640076 FANCD2Q9BXW9 1451 aa13.42□□□□□ -0.26
SCARB2-220ENST00000640076 PDS5BQ9NTI5 1447 aa13.41□□□□□ -0.26
SCARB2-220ENST00000640076 ABCC8Q09428 1581 aa13.41□□□□□ -0.26
SCARB2-220ENST00000640076 VSIG10Q8N0Z9 540 aa13.38□□□□□ -0.27
SCARB2-220ENST00000640076 ARXQ96QS3 562 aa13.38□□□□□ -0.27
SCARB2-220ENST00000640076 KIF21AQ7Z4S6 1674 aa13.36□□□□□ -0.27
SCARB2-220ENST00000640076 WRNQ14191 1432 aaPredicted RBP eCLIP13.36□□□□□ -0.27
SCARB2-220ENST00000640076 CEP164Q9UPV0 1460 aa13.36□□□□□ -0.27
SCARB2-220ENST00000640076 TIMELESSQ9UNS1 1208 aa13.34□□□□□ -0.27
SCARB2-220ENST00000640076 SYNJ1O43426 1573 aa13.32□□□□□ -0.28
SCARB2-220ENST00000640076 TRIM41Q8WV44 630 aa13.32□□□□□ -0.28
SCARB2-220ENST00000640076 CUX1P39880 1505 aa13.31□□□□□ -0.28
SCARB2-220ENST00000640076 ATXN8OSP0DMR3 200 aa13.31□□□□□ -0.28
SCARB2-220ENST00000640076 ERCC6Q03468 1493 aa13.29□□□□□ -0.28
SCARB2-220ENST00000640076 TOP2BQ02880 1626 aa13.29□□□□□ -0.28
SCARB2-220ENST00000640076 BIVM-ERCC5R4GMW8 1640 aa13.28□□□□□ -0.28
SCARB2-220ENST00000640076 URB2Q14146 1524 aaKnown RBP13.27□□□□□ -0.29
SCARB2-220ENST00000640076 DNMBPQ6XZF7 1577 aa13.26□□□□□ -0.29
SCARB2-220ENST00000640076 MRC2Q9UBG0 1479 aa13.25□□□□□ -0.29
SCARB2-220ENST00000640076 TOPBP1Q92547 1522 aa13.25□□□□□ -0.29
SCARB2-220ENST00000640076 SCAF1Q9H7N4 1312 aaKnown RBP13.25□□□□□ -0.29
SCARB2-220ENST00000640076 TULP1O00294 542 aaPredicted RBP13.21□□□□□ -0.29
SCARB2-220ENST00000640076 THOC2Q8NI27 1593 aaKnown RBP13.21□□□□□ -0.29
SCARB2-220ENST00000640076 WDR62O43379 1518 aa13.2□□□□□ -0.3
SCARB2-220ENST00000640076 FGD5Q6ZNL6 1462 aa13.19□□□□□ -0.3
SCARB2-220ENST00000640076 POLA1P09884 1462 aaPredicted RBP13.17□□□□□ -0.3
SCARB2-220ENST00000640076 SOGA1O94964 1423 aa13.11□□□□□ -0.31
SCARB2-220ENST00000640076 RAD54L2Q9Y4B4 1467 aa13.11□□□□□ -0.31
SCARB2-220ENST00000640076 CUX2O14529 1486 aa13.1□□□□□ -0.31
SCARB2-220ENST00000640076 KDM2AQ9Y2K7 1162 aa13.1□□□□□ -0.31
SCARB2-220ENST00000640076 TARBP1Q13395 1621 aaKnown RBP13.08□□□□□ -0.32
SCARB2-220ENST00000640076 ABCA10Q8WWZ4 1543 aa13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms