RNA–Protein interactions for RNA: ENST00000637616.1

CACNA1A-243, Transcript of calcium voltage-gated channel subunit alpha1 A, humanhuman

TSL 5

Gene CACNA1A, Length 3,081 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CACNA1A-243ENST00000637616 NISCHQ9Y2I1 1504 aa39.63■■■■□ 3.94
CACNA1A-243ENST00000637616 SHROOM4Q9ULL8 1493 aa35.03■■■■□ 3.2
CACNA1A-243ENST00000637616 SUPT5HO00267 1087 aaKnown RBP34.66■■■■□ 3.14
CACNA1A-243ENST00000637616 HRCP23327 699 aa33.83■■■■□ 3.01
CACNA1A-243ENST00000637616 MYO15BQ96JP2 1530 aa33.81■■■■□ 3
CACNA1A-243ENST00000637616 CHIC1Q5VXU3 224 aa33.74■■■□□ 2.99
CACNA1A-243ENST00000637616 PCGF6Q9BYE7 350 aa33.64■■■□□ 2.98
CACNA1A-243ENST00000637616 ZCCHC6Q5VYS8 1495 aaKnown RBP33.59■■■□□ 2.97
CACNA1A-243ENST00000637616 DCAF8L2P0C7V8 631 aa33.53■■■□□ 2.96
CACNA1A-243ENST00000637616 PPARGC1BQ86YN6 1023 aaKnown RBP33.43■■■□□ 2.94
CACNA1A-243ENST00000637616 LOC105371045A0A1W2PR82 267 aa33.08■■■□□ 2.89
CACNA1A-243ENST00000637616 CCDC180Q9P1Z9 1646 aa32.99■■■□□ 2.87
CACNA1A-243ENST00000637616 DCAF1Q9Y4B6 1507 aa32.69■■■□□ 2.82
CACNA1A-243ENST00000637616 TRIM26Q12899 539 aaPredicted RBP32.52■■■□□ 2.8
CACNA1A-243ENST00000637616 FAM9AQ8IZU1 332 aaPredicted RBP32.13■■■□□ 2.73
CACNA1A-243ENST00000637616 EHMT2Q96KQ7 1210 aa32.12■■■□□ 2.73
CACNA1A-243ENST00000637616 TRIM41Q8WV44 630 aa32■■■□□ 2.71
CACNA1A-243ENST00000637616 ZEB1P37275 1124 aaPredicted RBP31.91■■■□□ 2.7
CACNA1A-243ENST00000637616 ABCC9O60706 1549 aa31.79■■■□□ 2.68
CACNA1A-243ENST00000637616 RSF1Q96T23 1441 aaPredicted RBP31.79■■■□□ 2.68
CACNA1A-243ENST00000637616 SCAF1Q9H7N4 1312 aaKnown RBP31.77■■■□□ 2.68
CACNA1A-243ENST00000637616 SCRIBQ14160 1630 aa31.62■■■□□ 2.65
CACNA1A-243ENST00000637616 RB1CC1Q8TDY2 1594 aa31.58■■■□□ 2.65
CACNA1A-243ENST00000637616 PELP1Q8IZL8 1130 aaKnown RBP31.47■■■□□ 2.63
CACNA1A-243ENST00000637616 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP31.41■■■□□ 2.62
CACNA1A-243ENST00000637616 CCER1Q8TC90 406 aaPredicted RBP31.25■■■□□ 2.59
CACNA1A-243ENST00000637616 TTBK1Q5TCY1 1321 aaPredicted RBP31.19■■■□□ 2.58
CACNA1A-243ENST00000637616 CECR2Q9BXF3 1484 aa31.17■■■□□ 2.58
CACNA1A-243ENST00000637616 NEUROD1Q13562 356 aa31.15■■■□□ 2.58
CACNA1A-243ENST00000637616 ACIN1Q9UKV3 1341 aaKnown RBP31.1■■■□□ 2.57
CACNA1A-243ENST00000637616 MROH2BQ7Z745 1585 aa31.02■■■□□ 2.56
CACNA1A-243ENST00000637616 DIEXFQ68CQ4 756 aaKnown RBP30.96■■■□□ 2.55
CACNA1A-243ENST00000637616 GTF3C3Q9Y5Q9 886 aa30.92■■■□□ 2.54
CACNA1A-243ENST00000637616 WIZO95785 1651 aa30.89■■■□□ 2.54
CACNA1A-243ENST00000637616 CENPBP07199 599 aaPredicted RBP30.73■■■□□ 2.51
CACNA1A-243ENST00000637616 ABCC8Q09428 1581 aa30.59■■■□□ 2.49
CACNA1A-243ENST00000637616 YTHDC1Q96MU7 727 aaKnown RBP30.58■■■□□ 2.49
CACNA1A-243ENST00000637616 CCDC88BA6NC98 1476 aa30.58■■■□□ 2.49
CACNA1A-243ENST00000637616 CEP162Q5TB80 1403 aa30.53■■■□□ 2.48
CACNA1A-243ENST00000637616 NACADO15069 1562 aa30.5■■■□□ 2.47
CACNA1A-243ENST00000637616 BAZ1AQ9NRL2 1556 aaPredicted RBP30.48■■■□□ 2.47
CACNA1A-243ENST00000637616 SOGA1O94964 1423 aa30.48■■■□□ 2.47
CACNA1A-243ENST00000637616 UBTFP17480 764 aaKnown RBP30.48■■■□□ 2.47
CACNA1A-243ENST00000637616 EIF4G1Q04637 1599 aaKnown RBP30.47■■■□□ 2.47
CACNA1A-243ENST00000637616 ZNF316A6NFI3 1004 aaPredicted RBP30.45■■■□□ 2.47
CACNA1A-243ENST00000637616 WRNQ14191 1432 aaPredicted RBP eCLIP30.43■■■□□ 2.46
CACNA1A-243ENST00000637616 RUSC2Q8N2Y8 1516 aa30.34■■■□□ 2.45
CACNA1A-243ENST00000637616 HNRNPUL2Q1KMD3 747 aaKnown RBP30.33■■■□□ 2.45
CACNA1A-243ENST00000637616 CSRNP3Q8WYN3 585 aa30.32■■■□□ 2.44
CACNA1A-243ENST00000637616 TNIKQ9UKE5 1360 aa30.3■■■□□ 2.44
CACNA1A-243ENST00000637616 MIER1Q8N108 512 aa30.28■■■□□ 2.44
CACNA1A-243ENST00000637616 TOP2AP11388 1531 aaKnown RBP30.17■■■□□ 2.42
CACNA1A-243ENST00000637616 SMARCA2P51531 1590 aa30.12■■■□□ 2.41
CACNA1A-243ENST00000637616 RANGAP1P46060 587 aaPredicted RBP30.08■■■□□ 2.41
CACNA1A-243ENST00000637616 SMARCA4P51532 1647 aa30.01■■■□□ 2.39
CACNA1A-243ENST00000637616 GOLGA3Q08378 1498 aa29.99■■■□□ 2.39
CACNA1A-243ENST00000637616 EEA1Q15075 1411 aa29.96■■■□□ 2.39
CACNA1A-243ENST00000637616 MYT1Q01538 1121 aa29.94■■■□□ 2.38
CACNA1A-243ENST00000637616 APLP2Q06481 763 aa29.82■■■□□ 2.36
CACNA1A-243ENST00000637616 CLIP1P30622 1438 aa29.82■■■□□ 2.36
CACNA1A-243ENST00000637616 PABPN1Q86U42 306 aaKnown RBP eCLIP29.81■■■□□ 2.36
CACNA1A-243ENST00000637616 CEP164Q9UPV0 1460 aa29.72■■■□□ 2.35
CACNA1A-243ENST00000637616 VPS8Q8N3P4 1428 aa29.68■■■□□ 2.34
CACNA1A-243ENST00000637616 SYNJ1O43426 1573 aa29.64■■■□□ 2.34
CACNA1A-243ENST00000637616 RAPGEF2Q9Y4G8 1499 aa29.62■■■□□ 2.33
CACNA1A-243ENST00000637616 UNC13AQ9UPW8 1703 aa29.58■■■□□ 2.33
CACNA1A-243ENST00000637616 KIF21BO75037 1637 aa29.54■■■□□ 2.32
CACNA1A-243ENST00000637616 SUPT16HQ9Y5B9 1047 aaKnown RBP29.51■■■□□ 2.32
CACNA1A-243ENST00000637616 DHX57Q6P158 1386 aaKnown RBP29.48■■■□□ 2.31
CACNA1A-243ENST00000637616 KANK4Q5T7N3 995 aaPredicted RBP29.46■■■□□ 2.31
CACNA1A-243ENST00000637616 ITGAEP38570 1179 aa29.37■■■□□ 2.29
CACNA1A-243ENST00000637616 BAZ1BQ9UIG0 1483 aaKnown RBP29.36■■■□□ 2.29
CACNA1A-243ENST00000637616 KCNH8Q96L42 1107 aa29.32■■■□□ 2.28
CACNA1A-243ENST00000637616 CLSPNQ9HAW4 1339 aa29.28■■■□□ 2.28
CACNA1A-243ENST00000637616 BICRAQ9NZM4 1560 aa29.23■■■□□ 2.27
CACNA1A-243ENST00000637616 TSHZ2Q9NRE2 1034 aa29.22■■■□□ 2.27
CACNA1A-243ENST00000637616 ARAP1Q96P48 1450 aa29.19■■■□□ 2.26
CACNA1A-243ENST00000637616 ATAD2BQ9ULI0 1458 aa29.18■■■□□ 2.26
CACNA1A-243ENST00000637616 BCANQ96GW7 911 aa29.17■■■□□ 2.26
CACNA1A-243ENST00000637616 PEG3Q9GZU2 1588 aa29.17■■■□□ 2.26
CACNA1A-243ENST00000637616 TOP2BQ02880 1626 aa29.04■■■□□ 2.24
CACNA1A-243ENST00000637616 PRXQ9BXM0 1461 aa29.04■■■□□ 2.24
CACNA1A-243ENST00000637616 RRBP1Q9P2E9 1410 aaKnown RBP29.02■■■□□ 2.24
CACNA1A-243ENST00000637616 CCNB3Q8WWL7 1395 aa29.02■■■□□ 2.24
CACNA1A-243ENST00000637616 DDX10Q13206 875 aaKnown RBP28.99■■■□□ 2.23
CACNA1A-243ENST00000637616 FKBP8Q14318 412 aa28.94■■■□□ 2.22
CACNA1A-243ENST00000637616 RAB3GAP2Q9H2M9 1393 aa28.94■■■□□ 2.22
CACNA1A-243ENST00000637616 HIRIP3Q9BW71 556 aaPredicted RBP28.93■■■□□ 2.22
CACNA1A-243ENST00000637616 ERICH3Q5RHP9 1530 aa28.93■■■□□ 2.22
CACNA1A-243ENST00000637616 SIN3AQ96ST3 1273 aa28.92■■■□□ 2.22
CACNA1A-243ENST00000637616 ANP32EQ9BTT0 268 aa28.92■■■□□ 2.22
CACNA1A-243ENST00000637616 ARHGAP35Q9NRY4 1499 aa28.85■■■□□ 2.21
CACNA1A-243ENST00000637616 CUX2O14529 1486 aa28.84■■■□□ 2.21
CACNA1A-243ENST00000637616 BIVM-ERCC5R4GMW8 1640 aa28.82■■■□□ 2.2
CACNA1A-243ENST00000637616 MAPKBP1O60336 1514 aa28.81■■■□□ 2.2
CACNA1A-243ENST00000637616 KIF27Q86VH2 1401 aa28.8■■■□□ 2.2
CACNA1A-243ENST00000637616 FAM50AQ14320 339 aaKnown RBP28.8■■■□□ 2.2
CACNA1A-243ENST00000637616 TRIM52Q96A61 297 aa28.78■■■□□ 2.2
CACNA1A-243ENST00000637616 CUX1P39880 1505 aa28.78■■■□□ 2.2
CACNA1A-243ENST00000637616 ATP1B4Q9UN42 357 aaPredicted RBP28.73■■■□□ 2.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms