RNA–Protein interactions for RNA: ENST00000636767.1

CLN5-215, Transcript of CLN5, intracellular trafficking protein, human

APPRIS ALT2 TSL 5

Gene CLN5, Length 2,368 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN5-215	ENST00000636767	NISCH	Q9Y2I1	1504 aa		43.78	■■■■■ 4.6
CLN5-215	ENST00000636767	SHROOM4	Q9ULL8	1493 aa		37.57	■■■■□ 3.61
CLN5-215	ENST00000636767	ZCCHC6	Q5VYS8	1495 aa	Known RBP	37.15	■■■■□ 3.54
CLN5-215	ENST00000636767	CCDC180	Q9P1Z9	1646 aa		37.07	■■■■□ 3.53
CLN5-215	ENST00000636767	SUPT5H	O00267	1087 aa	Known RBP	37	■■■■□ 3.51
CLN5-215	ENST00000636767	MYO15B	Q96JP2	1530 aa		36.3	■■■■□ 3.4
CLN5-215	ENST00000636767	CHIC1	Q5VXU3	224 aa		36.23	■■■■□ 3.39
CLN5-215	ENST00000636767	DCAF8L2	P0C7V8	631 aa		36.02	■■■■□ 3.36
CLN5-215	ENST00000636767	DCAF1	Q9Y4B6	1507 aa		35.94	■■■■□ 3.34
CLN5-215	ENST00000636767	HRC	P23327	699 aa		35.86	■■■■□ 3.33
CLN5-215	ENST00000636767	PCGF6	Q9BYE7	350 aa		35.5	■■■■□ 3.27
CLN5-215	ENST00000636767	ABCC9	O60706	1549 aa		35.17	■■■■□ 3.22
CLN5-215	ENST00000636767	LOC105371045	A0A1W2PR82	267 aa		35.15	■■■■□ 3.22
CLN5-215	ENST00000636767	PPARGC1B	Q86YN6	1023 aa	Known RBP	35.02	■■■■□ 3.2
CLN5-215	ENST00000636767	RSF1	Q96T23	1441 aa	Predicted RBP	34.8	■■■■□ 3.16
CLN5-215	ENST00000636767	SCRIB	Q14160	1630 aa		34.8	■■■■□ 3.16
CLN5-215	ENST00000636767	TRIM26	Q12899	539 aa	Predicted RBP	34.74	■■■■□ 3.15
CLN5-215	ENST00000636767	RB1CC1	Q8TDY2	1594 aa		34.56	■■■■□ 3.12
CLN5-215	ENST00000636767	TRIM41	Q8WV44	630 aa		34.43	■■■■□ 3.1
CLN5-215	ENST00000636767	FAM9A	Q8IZU1	332 aa	Predicted RBP	34.16	■■■■□ 3.06
CLN5-215	ENST00000636767	ZEB1	P37275	1124 aa	Predicted RBP	34.16	■■■■□ 3.06
CLN5-215	ENST00000636767	NACAD	O15069	1562 aa		34.13	■■■■□ 3.05
CLN5-215	ENST00000636767	CECR2	Q9BXF3	1484 aa		34.12	■■■■□ 3.05
CLN5-215	ENST00000636767	MROH2B	Q7Z745	1585 aa		34.07	■■■■□ 3.04
CLN5-215	ENST00000636767	WIZ	O95785	1651 aa		33.93	■■■■□ 3.02
CLN5-215	ENST00000636767	EHMT2	Q96KQ7	1210 aa		33.85	■■■■□ 3.01
CLN5-215	ENST00000636767	BAZ1A	Q9NRL2	1556 aa	Predicted RBP	33.78	■■■■□ 3
CLN5-215	ENST00000636767	EIF4G1	Q04637	1599 aa	Known RBP	33.73	■■■□□ 2.99
CLN5-215	ENST00000636767	TOP2A	P11388	1531 aa	Known RBP	33.4	■■■□□ 2.94
CLN5-215	ENST00000636767	ABCC8	Q09428	1581 aa		33.32	■■■□□ 2.92
CLN5-215	ENST00000636767	SCAF1	Q9H7N4	1312 aa	Known RBP	33.29	■■■□□ 2.92
CLN5-215	ENST00000636767	SMARCA4	P51532	1647 aa		33.29	■■■□□ 2.92
CLN5-215	ENST00000636767	HNRNPUL2-BSCL2	H3BQZ7	746 aa	Predicted RBP	33.27	■■■□□ 2.92
CLN5-215	ENST00000636767	CCDC88B	A6NC98	1476 aa		33.26	■■■□□ 2.91
CLN5-215	ENST00000636767	SMARCA2	P51531	1590 aa		33.24	■■■□□ 2.91
CLN5-215	ENST00000636767	WRN	Q14191	1432 aa	Predicted RBP eCLIP	33.22	■■■□□ 2.91
CLN5-215	ENST00000636767	CCER1	Q8TC90	406 aa	Predicted RBP	33.19	■■■□□ 2.9
CLN5-215	ENST00000636767	CEP162	Q5TB80	1403 aa		33.11	■■■□□ 2.89
CLN5-215	ENST00000636767	UNC13A	Q9UPW8	1703 aa		33.09	■■■□□ 2.89
CLN5-215	ENST00000636767	PELP1	Q8IZL8	1130 aa	Known RBP	33.07	■■■□□ 2.88
CLN5-215	ENST00000636767	SOGA1	O94964	1423 aa		33.05	■■■□□ 2.88
CLN5-215	ENST00000636767	TNIK	Q9UKE5	1360 aa		33.01	■■■□□ 2.88
CLN5-215	ENST00000636767	EEA1	Q15075	1411 aa		32.96	■■■□□ 2.87
CLN5-215	ENST00000636767	TTBK1	Q5TCY1	1321 aa	Predicted RBP	32.9	■■■□□ 2.86
CLN5-215	ENST00000636767	RUSC2	Q8N2Y8	1516 aa		32.88	■■■□□ 2.85
CLN5-215	ENST00000636767	CSRNP3	Q8WYN3	585 aa		32.84	■■■□□ 2.85
CLN5-215	ENST00000636767	ACIN1	Q9UKV3	1341 aa	Known RBP	32.83	■■■□□ 2.85
CLN5-215	ENST00000636767	DIEXF	Q68CQ4	756 aa	Known RBP	32.79	■■■□□ 2.84
CLN5-215	ENST00000636767	GOLGA3	Q08378	1498 aa		32.77	■■■□□ 2.84
CLN5-215	ENST00000636767	NEUROD1	Q13562	356 aa		32.75	■■■□□ 2.83
CLN5-215	ENST00000636767	UBTF	P17480	764 aa	Known RBP	32.73	■■■□□ 2.83
CLN5-215	ENST00000636767	PEG3	Q9GZU2	1588 aa		32.63	■■■□□ 2.81
CLN5-215	ENST00000636767	BICRA	Q9NZM4	1560 aa		32.62	■■■□□ 2.81
CLN5-215	ENST00000636767	PABPN1	Q86U42	306 aa	Known RBP eCLIP	32.57	■■■□□ 2.8
CLN5-215	ENST00000636767	SYNJ1	O43426	1573 aa		32.55	■■■□□ 2.8
CLN5-215	ENST00000636767	KIF21B	O75037	1637 aa		32.55	■■■□□ 2.8
CLN5-215	ENST00000636767	CENPB	P07199	599 aa	Predicted RBP	32.54	■■■□□ 2.8
CLN5-215	ENST00000636767	CEP164	Q9UPV0	1460 aa		32.53	■■■□□ 2.8
CLN5-215	ENST00000636767	ZNF316	A6NFI3	1004 aa	Predicted RBP	32.45	■■■□□ 2.78
CLN5-215	ENST00000636767	GTF3C3	Q9Y5Q9	886 aa		32.44	■■■□□ 2.78
CLN5-215	ENST00000636767	CLIP1	P30622	1438 aa		32.39	■■■□□ 2.78
CLN5-215	ENST00000636767	VPS8	Q8N3P4	1428 aa		32.33	■■■□□ 2.77
CLN5-215	ENST00000636767	BAZ1B	Q9UIG0	1483 aa	Known RBP	32.32	■■■□□ 2.76
CLN5-215	ENST00000636767	ATAD2B	Q9ULI0	1458 aa		32.29	■■■□□ 2.76
CLN5-215	ENST00000636767	HNRNPUL2	Q1KMD3	747 aa	Known RBP	32.27	■■■□□ 2.76
CLN5-215	ENST00000636767	RAPGEF2	Q9Y4G8	1499 aa		32.24	■■■□□ 2.75
CLN5-215	ENST00000636767	TOP2B	Q02880	1626 aa		32.11	■■■□□ 2.73
CLN5-215	ENST00000636767	APLP2	Q06481	763 aa		32.07	■■■□□ 2.72
CLN5-215	ENST00000636767	MIER1	Q8N108	512 aa		32.04	■■■□□ 2.72
CLN5-215	ENST00000636767	YTHDC1	Q96MU7	727 aa	Known RBP	32.02	■■■□□ 2.72
CLN5-215	ENST00000636767	BIVM-ERCC5	R4GMW8	1640 aa		32	■■■□□ 2.71
CLN5-215	ENST00000636767	RANGAP1	P46060	587 aa	Predicted RBP	31.95	■■■□□ 2.7
CLN5-215	ENST00000636767	ERICH3	Q5RHP9	1530 aa		31.94	■■■□□ 2.7
CLN5-215	ENST00000636767	PRX	Q9BXM0	1461 aa		31.88	■■■□□ 2.69
CLN5-215	ENST00000636767	ARAP1	Q96P48	1450 aa		31.87	■■■□□ 2.69
CLN5-215	ENST00000636767	CLSPN	Q9HAW4	1339 aa		31.8	■■■□□ 2.68
CLN5-215	ENST00000636767	DHX57	Q6P158	1386 aa	Known RBP	31.78	■■■□□ 2.68
CLN5-215	ENST00000636767	CUX1	P39880	1505 aa		31.7	■■■□□ 2.66
CLN5-215	ENST00000636767	KANK4	Q5T7N3	995 aa	Predicted RBP	31.68	■■■□□ 2.66
CLN5-215	ENST00000636767	RRBP1	Q9P2E9	1410 aa	Known RBP	31.65	■■■□□ 2.66
CLN5-215	ENST00000636767	HMGXB3	Q12766	1538 aa		31.64	■■■□□ 2.66
CLN5-215	ENST00000636767	KIF27	Q86VH2	1401 aa		31.6	■■■□□ 2.65
CLN5-215	ENST00000636767	NCAPD3	P42695	1498 aa		31.57	■■■□□ 2.64
CLN5-215	ENST00000636767	CUX2	O14529	1486 aa		31.56	■■■□□ 2.64
CLN5-215	ENST00000636767	ARHGAP35	Q9NRY4	1499 aa		31.51	■■■□□ 2.63
CLN5-215	ENST00000636767	MYT1	Q01538	1121 aa		31.47	■■■□□ 2.63
CLN5-215	ENST00000636767	CCNB3	Q8WWL7	1395 aa		31.46	■■■□□ 2.63
CLN5-215	ENST00000636767	CFTR	P13569	1480 aa		31.45	■■■□□ 2.63
CLN5-215	ENST00000636767	PRDM2	Q13029	1718 aa		31.3	■■■□□ 2.6
CLN5-215	ENST00000636767	TIAM1	Q13009	1591 aa		31.27	■■■□□ 2.6
CLN5-215	ENST00000636767	MAPKBP1	O60336	1514 aa		31.24	■■■□□ 2.59
CLN5-215	ENST00000636767	MAP3K1	Q13233	1512 aa		31.24	■■■□□ 2.59
CLN5-215	ENST00000636767	ITGAE	P38570	1179 aa		31.23	■■■□□ 2.59
CLN5-215	ENST00000636767	RAB3GAP2	Q9H2M9	1393 aa		31.23	■■■□□ 2.59
CLN5-215	ENST00000636767	IGF1R	P08069	1367 aa		31.21	■■■□□ 2.59
CLN5-215	ENST00000636767	SUPT16H	Q9Y5B9	1047 aa	Known RBP	31.19	■■■□□ 2.58
CLN5-215	ENST00000636767	LRRC9	Q6ZRR7	1453 aa		31.12	■■■□□ 2.57
CLN5-215	ENST00000636767	CARMIL1	Q5VZK9	1371 aa		31.08	■■■□□ 2.57
CLN5-215	ENST00000636767	SETD5	Q9C0A6	1442 aa		31.08	■■■□□ 2.57
CLN5-215	ENST00000636767	PHLDB1	Q86UU1	1377 aa		31.05	■■■□□ 2.56

Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms