RNA–Protein interactions for RNA: ENST00000618450.1

CHD7-212, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

Gene CHD7, Length 4,222 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-212ENST00000618450 NISCHQ9Y2I1 1504 aa16.62■□□□□ 0.25
CHD7-212ENST00000618450 CCDC180Q9P1Z9 1646 aa14.17□□□□□ -0.14
CHD7-212ENST00000618450 ZCCHC6Q5VYS8 1495 aaKnown RBP14.16□□□□□ -0.14
CHD7-212ENST00000618450 SHROOM4Q9ULL8 1493 aa13.86□□□□□ -0.19
CHD7-212ENST00000618450 MYO15BQ96JP2 1530 aa13.83□□□□□ -0.2
CHD7-212ENST00000618450 DCAF1Q9Y4B6 1507 aa13.79□□□□□ -0.2
CHD7-212ENST00000618450 CHIC1Q5VXU3 224 aa13.61□□□□□ -0.23
CHD7-212ENST00000618450 SUPT5HO00267 1087 aaKnown RBP13.59□□□□□ -0.23
CHD7-212ENST00000618450 HRCP23327 699 aa13.47□□□□□ -0.25
CHD7-212ENST00000618450 ABCC9O60706 1549 aa13.42□□□□□ -0.26
CHD7-212ENST00000618450 RSF1Q96T23 1441 aaPredicted RBP13.18□□□□□ -0.3
CHD7-212ENST00000618450 PCGF6Q9BYE7 350 aa13.14□□□□□ -0.31
CHD7-212ENST00000618450 RB1CC1Q8TDY2 1594 aa13.11□□□□□ -0.31
CHD7-212ENST00000618450 LOC105371045A0A1W2PR82 267 aa13.11□□□□□ -0.31
CHD7-212ENST00000618450 PPARGC1BQ86YN6 1023 aaKnown RBP13.1□□□□□ -0.31
CHD7-212ENST00000618450 EIF4G1Q04637 1599 aaKnown RBP13.07□□□□□ -0.32
CHD7-212ENST00000618450 SCRIBQ14160 1630 aa13.06□□□□□ -0.32
CHD7-212ENST00000618450 DCAF8L2P0C7V8 631 aa12.99□□□□□ -0.33
CHD7-212ENST00000618450 TRIM26Q12899 539 aaPredicted RBP12.96□□□□□ -0.34
CHD7-212ENST00000618450 MROH2BQ7Z745 1585 aa12.92□□□□□ -0.34
CHD7-212ENST00000618450 NACADO15069 1562 aa12.92□□□□□ -0.34
CHD7-212ENST00000618450 CECR2Q9BXF3 1484 aa12.9□□□□□ -0.34
CHD7-212ENST00000618450 WIZO95785 1651 aa12.88□□□□□ -0.35
CHD7-212ENST00000618450 BAZ1AQ9NRL2 1556 aaPredicted RBP12.86□□□□□ -0.35
CHD7-212ENST00000618450 AEBP2Q6ZN18 517 aaPredicted RBP12.86□□□□□ -0.35
CHD7-212ENST00000618450 UNC13AQ9UPW8 1703 aa12.74□□□□□ -0.37
CHD7-212ENST00000618450 TRIM41Q8WV44 630 aa12.69□□□□□ -0.38
CHD7-212ENST00000618450 TOP2AP11388 1531 aaKnown RBP12.67□□□□□ -0.38
CHD7-212ENST00000618450 ZEB1P37275 1124 aaPredicted RBP12.66□□□□□ -0.38
CHD7-212ENST00000618450 SMARCA2P51531 1590 aa12.65□□□□□ -0.38
CHD7-212ENST00000618450 WRNQ14191 1432 aaPredicted RBP eCLIP12.65□□□□□ -0.38
CHD7-212ENST00000618450 SMARCA4P51532 1647 aa12.64□□□□□ -0.39
CHD7-212ENST00000618450 CCDC88BA6NC98 1476 aa12.57□□□□□ -0.4
CHD7-212ENST00000618450 ABCC8Q09428 1581 aa12.57□□□□□ -0.4
CHD7-212ENST00000618450 SCAF1Q9H7N4 1312 aaKnown RBP12.56□□□□□ -0.4
CHD7-212ENST00000618450 PEG3Q9GZU2 1588 aa12.55□□□□□ -0.4
CHD7-212ENST00000618450 BICRAQ9NZM4 1560 aa12.49□□□□□ -0.41
CHD7-212ENST00000618450 FAM9AQ8IZU1 332 aaPredicted RBP12.47□□□□□ -0.41
CHD7-212ENST00000618450 SOGA1O94964 1423 aa12.45□□□□□ -0.42
CHD7-212ENST00000618450 RUSC2Q8N2Y8 1516 aa12.44□□□□□ -0.42
CHD7-212ENST00000618450 TNIKQ9UKE5 1360 aa12.43□□□□□ -0.42
CHD7-212ENST00000618450 CEP162Q5TB80 1403 aa12.43□□□□□ -0.42
CHD7-212ENST00000618450 KIF21BO75037 1637 aa12.4□□□□□ -0.43
CHD7-212ENST00000618450 EEA1Q15075 1411 aa12.39□□□□□ -0.43
CHD7-212ENST00000618450 SYNJ1O43426 1573 aa12.37□□□□□ -0.43
CHD7-212ENST00000618450 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.32□□□□□ -0.44
CHD7-212ENST00000618450 PELP1Q8IZL8 1130 aaKnown RBP12.29□□□□□ -0.44
CHD7-212ENST00000618450 GOLGA3Q08378 1498 aa12.28□□□□□ -0.44
CHD7-212ENST00000618450 ACIN1Q9UKV3 1341 aaKnown RBP12.28□□□□□ -0.44
CHD7-212ENST00000618450 NEUROD1Q13562 356 aa12.28□□□□□ -0.44
CHD7-212ENST00000618450 BIVM-ERCC5R4GMW8 1640 aa12.25□□□□□ -0.45
CHD7-212ENST00000618450 BAZ1BQ9UIG0 1483 aaKnown RBP12.23□□□□□ -0.45
CHD7-212ENST00000618450 EHMT2Q96KQ7 1210 aa12.23□□□□□ -0.45
CHD7-212ENST00000618450 TOP2BQ02880 1626 aa12.22□□□□□ -0.45
CHD7-212ENST00000618450 CSRNP3Q8WYN3 585 aa12.22□□□□□ -0.45
CHD7-212ENST00000618450 CEP164Q9UPV0 1460 aa12.21□□□□□ -0.46
CHD7-212ENST00000618450 ATAD2BQ9ULI0 1458 aa12.19□□□□□ -0.46
CHD7-212ENST00000618450 CLIP1P30622 1438 aa12.18□□□□□ -0.46
CHD7-212ENST00000618450 CCER1Q8TC90 406 aaPredicted RBP12.16□□□□□ -0.46
CHD7-212ENST00000618450 DIEXFQ68CQ4 756 aaKnown RBP12.16□□□□□ -0.46
CHD7-212ENST00000618450 VPS8Q8N3P4 1428 aa12.16□□□□□ -0.46
CHD7-212ENST00000618450 RAPGEF2Q9Y4G8 1499 aa12.15□□□□□ -0.46
CHD7-212ENST00000618450 ERICH3Q5RHP9 1530 aa12.13□□□□□ -0.47
CHD7-212ENST00000618450 PRXQ9BXM0 1461 aa12.12□□□□□ -0.47
CHD7-212ENST00000618450 CUX2O14529 1486 aa12.1□□□□□ -0.47
CHD7-212ENST00000618450 ARAP1Q96P48 1450 aa12.09□□□□□ -0.47
CHD7-212ENST00000618450 ZNF316A6NFI3 1004 aaPredicted RBP12.07□□□□□ -0.48
CHD7-212ENST00000618450 GTF3C3Q9Y5Q9 886 aa12.06□□□□□ -0.48
CHD7-212ENST00000618450 PRDM2Q13029 1718 aa12.04□□□□□ -0.48
CHD7-212ENST00000618450 HMGXB3Q12766 1538 aa12.02□□□□□ -0.48
CHD7-212ENST00000618450 CUX1P39880 1505 aa12.02□□□□□ -0.48
CHD7-212ENST00000618450 RRBP1Q9P2E9 1410 aaKnown RBP12.01□□□□□ -0.49
CHD7-212ENST00000618450 DHX57Q6P158 1386 aaKnown RBP11.99□□□□□ -0.49
CHD7-212ENST00000618450 MIER1Q8N108 512 aa11.97□□□□□ -0.49
CHD7-212ENST00000618450 CLSPNQ9HAW4 1339 aa11.96□□□□□ -0.5
CHD7-212ENST00000618450 NCAPD3P42695 1498 aa11.96□□□□□ -0.5
CHD7-212ENST00000618450 UBTFP17480 764 aaKnown RBP11.95□□□□□ -0.5
CHD7-212ENST00000618450 PABPN1Q86U42 306 aaKnown RBP eCLIP11.93□□□□□ -0.5
CHD7-212ENST00000618450 CENPBP07199 599 aaPredicted RBP11.92□□□□□ -0.5
CHD7-212ENST00000618450 MAPKBP1O60336 1514 aa11.92□□□□□ -0.5
CHD7-212ENST00000618450 CFTRP13569 1480 aa11.92□□□□□ -0.5
CHD7-212ENST00000618450 ARHGAP35Q9NRY4 1499 aa11.92□□□□□ -0.5
CHD7-212ENST00000618450 MAP3K1Q13233 1512 aa11.92□□□□□ -0.5
CHD7-212ENST00000618450 TTBK1Q5TCY1 1321 aaPredicted RBP11.91□□□□□ -0.5
CHD7-212ENST00000618450 KANK4Q5T7N3 995 aaPredicted RBP11.87□□□□□ -0.51
CHD7-212ENST00000618450 CFAP43Q8NDM7 1665 aa11.85□□□□□ -0.51
CHD7-212ENST00000618450 TIAM1Q13009 1591 aa11.84□□□□□ -0.51
CHD7-212ENST00000618450 HNRNPUL2Q1KMD3 747 aaKnown RBP11.83□□□□□ -0.52
CHD7-212ENST00000618450 KIF27Q86VH2 1401 aa11.78□□□□□ -0.52
CHD7-212ENST00000618450 IGF1RP08069 1367 aa11.77□□□□□ -0.53
CHD7-212ENST00000618450 LRRIQ1Q96JM4 1722 aa11.76□□□□□ -0.53
CHD7-212ENST00000618450 CCNB3Q8WWL7 1395 aa11.76□□□□□ -0.53
CHD7-212ENST00000618450 LRRC9Q6ZRR7 1453 aa11.74□□□□□ -0.53
CHD7-212ENST00000618450 PCF11O94913 1555 aaKnown RBP11.72□□□□□ -0.53
CHD7-212ENST00000618450 WDR97A6NE52 1622 aa11.72□□□□□ -0.53
CHD7-212ENST00000618450 KDM5BQ9UGL1 1544 aa11.71□□□□□ -0.53
CHD7-212ENST00000618450 RAB3GAP2Q9H2M9 1393 aa11.69□□□□□ -0.54
CHD7-212ENST00000618450 PHLDB1Q86UU1 1377 aa11.69□□□□□ -0.54
CHD7-212ENST00000618450 SUPT16HQ9Y5B9 1047 aaKnown RBP11.68□□□□□ -0.54
CHD7-212ENST00000618450 YTHDC1Q96MU7 727 aaKnown RBP11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 96.7 ms