RNA–Protein interactions for RNA: ENST00000604213.1

LYSMD4-211, Transcript of LysM domain containing 4, humanhuman

TSL 1 (best)

Gene LYSMD4, Length 2,356 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD4-211ENST00000604213 NISCHQ9Y2I1 1504 aa30.24■■■□□ 2.43
LYSMD4-211ENST00000604213 SHROOM4Q9ULL8 1493 aa26.18■■□□□ 1.78
LYSMD4-211ENST00000604213 SUPT5HO00267 1087 aaKnown RBP25.91■■□□□ 1.74
LYSMD4-211ENST00000604213 ZCCHC6Q5VYS8 1495 aaKnown RBP25.69■■□□□ 1.7
LYSMD4-211ENST00000604213 HRCP23327 699 aa25.61■■□□□ 1.69
LYSMD4-211ENST00000604213 MYO15BQ96JP2 1530 aa25.54■■□□□ 1.68
LYSMD4-211ENST00000604213 CHIC1Q5VXU3 224 aa25.48■■□□□ 1.67
LYSMD4-211ENST00000604213 CCDC180Q9P1Z9 1646 aa25.41■■□□□ 1.66
LYSMD4-211ENST00000604213 PCGF6Q9BYE7 350 aa25.2■■□□□ 1.62
LYSMD4-211ENST00000604213 PPARGC1BQ86YN6 1023 aaKnown RBP24.98■■□□□ 1.59
LYSMD4-211ENST00000604213 DCAF1Q9Y4B6 1507 aa24.98■■□□□ 1.59
LYSMD4-211ENST00000604213 DCAF8L2P0C7V8 631 aa24.9■■□□□ 1.58
LYSMD4-211ENST00000604213 LOC105371045A0A1W2PR82 267 aa24.75■■□□□ 1.55
LYSMD4-211ENST00000604213 TRIM26Q12899 539 aaPredicted RBP24.6■■□□□ 1.53
LYSMD4-211ENST00000604213 ABCC9O60706 1549 aa24.33■■□□□ 1.49
LYSMD4-211ENST00000604213 ZEB1P37275 1124 aaPredicted RBP24.29■■□□□ 1.48
LYSMD4-211ENST00000604213 RSF1Q96T23 1441 aaPredicted RBP24.16■■□□□ 1.46
LYSMD4-211ENST00000604213 TRIM41Q8WV44 630 aa24.08■■□□□ 1.45
LYSMD4-211ENST00000604213 PELP1Q8IZL8 1130 aaKnown RBP24.04■■□□□ 1.44
LYSMD4-211ENST00000604213 RB1CC1Q8TDY2 1594 aa23.96■■□□□ 1.43
LYSMD4-211ENST00000604213 SCRIBQ14160 1630 aa23.95■■□□□ 1.42
LYSMD4-211ENST00000604213 SCAF1Q9H7N4 1312 aaKnown RBP23.93■■□□□ 1.42
LYSMD4-211ENST00000604213 FAM9AQ8IZU1 332 aaPredicted RBP23.92■■□□□ 1.42
LYSMD4-211ENST00000604213 EHMT2Q96KQ7 1210 aa23.7■■□□□ 1.38
LYSMD4-211ENST00000604213 CECR2Q9BXF3 1484 aa23.58■■□□□ 1.37
LYSMD4-211ENST00000604213 MROH2BQ7Z745 1585 aa23.55■■□□□ 1.36
LYSMD4-211ENST00000604213 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP23.51■■□□□ 1.35
LYSMD4-211ENST00000604213 ACIN1Q9UKV3 1341 aaKnown RBP23.51■■□□□ 1.35
LYSMD4-211ENST00000604213 CCER1Q8TC90 406 aaPredicted RBP23.47■■□□□ 1.35
LYSMD4-211ENST00000604213 WIZO95785 1651 aa23.44■■□□□ 1.34
LYSMD4-211ENST00000604213 NEUROD1Q13562 356 aa23.43■■□□□ 1.34
LYSMD4-211ENST00000604213 NACADO15069 1562 aa23.39■■□□□ 1.33
LYSMD4-211ENST00000604213 EIF4G1Q04637 1599 aaKnown RBP23.38■■□□□ 1.33
LYSMD4-211ENST00000604213 BAZ1AQ9NRL2 1556 aaPredicted RBP23.33■■□□□ 1.33
LYSMD4-211ENST00000604213 DIEXFQ68CQ4 756 aaKnown RBP23.32■■□□□ 1.32
LYSMD4-211ENST00000604213 WRNQ14191 1432 aaPredicted RBP eCLIP23.29■■□□□ 1.32
LYSMD4-211ENST00000604213 CENPBP07199 599 aaPredicted RBP23.25■■□□□ 1.31
LYSMD4-211ENST00000604213 GTF3C3Q9Y5Q9 886 aa23.24■■□□□ 1.31
LYSMD4-211ENST00000604213 CEP162Q5TB80 1403 aa23.15■■□□□ 1.3
LYSMD4-211ENST00000604213 CCDC88BA6NC98 1476 aa23.13■■□□□ 1.29
LYSMD4-211ENST00000604213 ABCC8Q09428 1581 aa23.11■■□□□ 1.29
LYSMD4-211ENST00000604213 TNIKQ9UKE5 1360 aa23.08■■□□□ 1.29
LYSMD4-211ENST00000604213 TTBK1Q5TCY1 1321 aaPredicted RBP23.08■■□□□ 1.29
LYSMD4-211ENST00000604213 TOP2AP11388 1531 aaKnown RBP23.07■■□□□ 1.28
LYSMD4-211ENST00000604213 ZNF316A6NFI3 1004 aaPredicted RBP23.03■■□□□ 1.28
LYSMD4-211ENST00000604213 SOGA1O94964 1423 aa23.02■■□□□ 1.28
LYSMD4-211ENST00000604213 SMARCA2P51531 1590 aa22.97■■□□□ 1.27
LYSMD4-211ENST00000604213 MYT1Q01538 1121 aa22.97■■□□□ 1.27
LYSMD4-211ENST00000604213 EEA1Q15075 1411 aa22.96■■□□□ 1.27
LYSMD4-211ENST00000604213 CSRNP3Q8WYN3 585 aa22.92■■□□□ 1.26
LYSMD4-211ENST00000604213 SMARCA4P51532 1647 aa22.91■■□□□ 1.26
LYSMD4-211ENST00000604213 RUSC2Q8N2Y8 1516 aa22.89■■□□□ 1.25
LYSMD4-211ENST00000604213 UBTFP17480 764 aaKnown RBP22.86■■□□□ 1.25
LYSMD4-211ENST00000604213 GOLGA3Q08378 1498 aa22.84■■□□□ 1.25
LYSMD4-211ENST00000604213 YTHDC1Q96MU7 727 aaKnown RBP22.78■■□□□ 1.24
LYSMD4-211ENST00000604213 MIER1Q8N108 512 aa22.78■■□□□ 1.24
LYSMD4-211ENST00000604213 HNRNPUL2Q1KMD3 747 aaKnown RBP22.69■■□□□ 1.22
LYSMD4-211ENST00000604213 CEP164Q9UPV0 1460 aa22.65■■□□□ 1.22
LYSMD4-211ENST00000604213 KIF21BO75037 1637 aa22.63■■□□□ 1.21
LYSMD4-211ENST00000604213 CLIP1P30622 1438 aa22.6■■□□□ 1.21
LYSMD4-211ENST00000604213 UNC13AQ9UPW8 1703 aa22.58■■□□□ 1.21
LYSMD4-211ENST00000604213 VPS8Q8N3P4 1428 aa22.58■■□□□ 1.2
LYSMD4-211ENST00000604213 SYNJ1O43426 1573 aa22.53■■□□□ 1.2
LYSMD4-211ENST00000604213 BAZ1BQ9UIG0 1483 aaKnown RBP22.49■■□□□ 1.19
LYSMD4-211ENST00000604213 PEG3Q9GZU2 1588 aa22.44■■□□□ 1.18
LYSMD4-211ENST00000604213 APLP2Q06481 763 aa22.44■■□□□ 1.18
LYSMD4-211ENST00000604213 RAPGEF2Q9Y4G8 1499 aa22.43■■□□□ 1.18
LYSMD4-211ENST00000604213 CLSPNQ9HAW4 1339 aa22.4■■□□□ 1.18
LYSMD4-211ENST00000604213 DHX57Q6P158 1386 aaKnown RBP22.35■■□□□ 1.17
LYSMD4-211ENST00000604213 BICRAQ9NZM4 1560 aa22.31■■□□□ 1.16
LYSMD4-211ENST00000604213 SUPT16HQ9Y5B9 1047 aaKnown RBP22.27■■□□□ 1.16
LYSMD4-211ENST00000604213 RANGAP1P46060 587 aaPredicted RBP22.27■■□□□ 1.16
LYSMD4-211ENST00000604213 PABPN1Q86U42 306 aaKnown RBP eCLIP22.27■■□□□ 1.16
LYSMD4-211ENST00000604213 ATAD2BQ9ULI0 1458 aa22.21■■□□□ 1.15
LYSMD4-211ENST00000604213 ARAP1Q96P48 1450 aa22.2■■□□□ 1.14
LYSMD4-211ENST00000604213 TOP2BQ02880 1626 aa22.2■■□□□ 1.14
LYSMD4-211ENST00000604213 ERICH3Q5RHP9 1530 aa22.17■■□□□ 1.14
LYSMD4-211ENST00000604213 KANK4Q5T7N3 995 aaPredicted RBP22.16■■□□□ 1.14
LYSMD4-211ENST00000604213 PRXQ9BXM0 1461 aa22.15■■□□□ 1.14
LYSMD4-211ENST00000604213 RRBP1Q9P2E9 1410 aaKnown RBP22.14■■□□□ 1.14
LYSMD4-211ENST00000604213 CUX2O14529 1486 aa22.12■■□□□ 1.13
LYSMD4-211ENST00000604213 BIVM-ERCC5R4GMW8 1640 aa22.1■■□□□ 1.13
LYSMD4-211ENST00000604213 TSHZ2Q9NRE2 1034 aa22.07■■□□□ 1.12
LYSMD4-211ENST00000604213 CCNB3Q8WWL7 1395 aa22.01■■□□□ 1.11
LYSMD4-211ENST00000604213 KCNH8Q96L42 1107 aa21.94■■□□□ 1.1
LYSMD4-211ENST00000604213 ARHGAP35Q9NRY4 1499 aa21.91■■□□□ 1.1
LYSMD4-211ENST00000604213 MAPKBP1O60336 1514 aa21.9■■□□□ 1.1
LYSMD4-211ENST00000604213 KIF27Q86VH2 1401 aa21.89■■□□□ 1.1
LYSMD4-211ENST00000604213 CUX1P39880 1505 aa21.89■■□□□ 1.09
LYSMD4-211ENST00000604213 ANP32EQ9BTT0 268 aa21.89■■□□□ 1.09
LYSMD4-211ENST00000604213 RAB3GAP2Q9H2M9 1393 aa21.88■■□□□ 1.09
LYSMD4-211ENST00000604213 ITGAEP38570 1179 aa21.87■■□□□ 1.09
LYSMD4-211ENST00000604213 SETD5Q9C0A6 1442 aa21.77■■□□□ 1.08
LYSMD4-211ENST00000604213 MAP3K1Q13233 1512 aa21.77■■□□□ 1.08
LYSMD4-211ENST00000604213 WDR97A6NE52 1622 aa21.76■■□□□ 1.07
LYSMD4-211ENST00000604213 BCANQ96GW7 911 aa21.75■■□□□ 1.07
LYSMD4-211ENST00000604213 TIAM1Q13009 1591 aa21.75■■□□□ 1.07
LYSMD4-211ENST00000604213 DDX10Q13206 875 aaKnown RBP21.74■■□□□ 1.07
LYSMD4-211ENST00000604213 FKBP8Q14318 412 aa21.74■■□□□ 1.07
LYSMD4-211ENST00000604213 PPP1R15AO75807 674 aaPredicted RBP21.72■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms