RNA–Protein interactions for RNA: ENST00000600387.5

ARHGEF1-221, Transcript of Rho guanine nucleotide exchange factor 1, humanhuman

TSL 3

Gene ARHGEF1, Length 2,272 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF1-221ENST00000600387 NISCHQ9Y2I1 1504 aa36.93■■■■□ 3.5
ARHGEF1-221ENST00000600387 SHROOM4Q9ULL8 1493 aa31.79■■■□□ 2.68
ARHGEF1-221ENST00000600387 SUPT5HO00267 1087 aaKnown RBP31.5■■■□□ 2.63
ARHGEF1-221ENST00000600387 ZCCHC6Q5VYS8 1495 aaKnown RBP31.37■■■□□ 2.61
ARHGEF1-221ENST00000600387 CCDC180Q9P1Z9 1646 aa31.21■■■□□ 2.59
ARHGEF1-221ENST00000600387 HRCP23327 699 aa31.19■■■□□ 2.58
ARHGEF1-221ENST00000600387 MYO15BQ96JP2 1530 aa31.04■■■□□ 2.56
ARHGEF1-221ENST00000600387 CHIC1Q5VXU3 224 aa30.99■■■□□ 2.55
ARHGEF1-221ENST00000600387 PCGF6Q9BYE7 350 aa30.65■■■□□ 2.5
ARHGEF1-221ENST00000600387 DCAF1Q9Y4B6 1507 aa30.53■■■□□ 2.48
ARHGEF1-221ENST00000600387 PPARGC1BQ86YN6 1023 aaKnown RBP30.29■■■□□ 2.44
ARHGEF1-221ENST00000600387 DCAF8L2P0C7V8 631 aa30.27■■■□□ 2.44
ARHGEF1-221ENST00000600387 LOC105371045A0A1W2PR82 267 aa30.03■■■□□ 2.4
ARHGEF1-221ENST00000600387 TRIM26Q12899 539 aaPredicted RBP30.02■■■□□ 2.4
ARHGEF1-221ENST00000600387 ABCC9O60706 1549 aa29.76■■■□□ 2.35
ARHGEF1-221ENST00000600387 ZEB1P37275 1124 aaPredicted RBP29.73■■■□□ 2.35
ARHGEF1-221ENST00000600387 PELP1Q8IZL8 1130 aaKnown RBP29.48■■■□□ 2.31
ARHGEF1-221ENST00000600387 RSF1Q96T23 1441 aaPredicted RBP29.43■■■□□ 2.3
ARHGEF1-221ENST00000600387 TRIM41Q8WV44 630 aa29.35■■■□□ 2.29
ARHGEF1-221ENST00000600387 RB1CC1Q8TDY2 1594 aa29.3■■■□□ 2.28
ARHGEF1-221ENST00000600387 SCRIBQ14160 1630 aa29.23■■■□□ 2.27
ARHGEF1-221ENST00000600387 SCAF1Q9H7N4 1312 aaKnown RBP29.08■■■□□ 2.25
ARHGEF1-221ENST00000600387 FAM9AQ8IZU1 332 aaPredicted RBP29.04■■■□□ 2.24
ARHGEF1-221ENST00000600387 EHMT2Q96KQ7 1210 aa28.72■■■□□ 2.19
ARHGEF1-221ENST00000600387 MROH2BQ7Z745 1585 aa28.7■■■□□ 2.19
ARHGEF1-221ENST00000600387 CECR2Q9BXF3 1484 aa28.68■■■□□ 2.18
ARHGEF1-221ENST00000600387 NACADO15069 1562 aa28.66■■■□□ 2.18
ARHGEF1-221ENST00000600387 ACIN1Q9UKV3 1341 aaKnown RBP28.65■■■□□ 2.18
ARHGEF1-221ENST00000600387 WIZO95785 1651 aa28.63■■■□□ 2.17
ARHGEF1-221ENST00000600387 CCER1Q8TC90 406 aaPredicted RBP28.61■■■□□ 2.17
ARHGEF1-221ENST00000600387 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP28.58■■■□□ 2.17
ARHGEF1-221ENST00000600387 EIF4G1Q04637 1599 aaKnown RBP28.56■■■□□ 2.16
ARHGEF1-221ENST00000600387 BAZ1AQ9NRL2 1556 aaPredicted RBP28.56■■■□□ 2.16
ARHGEF1-221ENST00000600387 NEUROD1Q13562 356 aa28.49■■■□□ 2.15
ARHGEF1-221ENST00000600387 CENPBP07199 599 aaPredicted RBP28.45■■■□□ 2.14
ARHGEF1-221ENST00000600387 WRNQ14191 1432 aaPredicted RBP eCLIP28.45■■■□□ 2.14
ARHGEF1-221ENST00000600387 DIEXFQ68CQ4 756 aaKnown RBP28.44■■■□□ 2.14
ARHGEF1-221ENST00000600387 GTF3C3Q9Y5Q9 886 aa28.3■■■□□ 2.12
ARHGEF1-221ENST00000600387 MYT1Q01538 1121 aa28.26■■■□□ 2.11
ARHGEF1-221ENST00000600387 CEP162Q5TB80 1403 aa28.23■■■□□ 2.11
ARHGEF1-221ENST00000600387 TOP2AP11388 1531 aaKnown RBP28.21■■■□□ 2.11
ARHGEF1-221ENST00000600387 TNIKQ9UKE5 1360 aa28.18■■■□□ 2.1
ARHGEF1-221ENST00000600387 ABCC8Q09428 1581 aa28.17■■■□□ 2.1
ARHGEF1-221ENST00000600387 CCDC88BA6NC98 1476 aa28.17■■■□□ 2.1
ARHGEF1-221ENST00000600387 EEA1Q15075 1411 aa28.11■■■□□ 2.09
ARHGEF1-221ENST00000600387 ZNF316A6NFI3 1004 aaPredicted RBP28.08■■■□□ 2.09
ARHGEF1-221ENST00000600387 SMARCA2P51531 1590 aa28.06■■■□□ 2.08
ARHGEF1-221ENST00000600387 SMARCA4P51532 1647 aa28.02■■■□□ 2.08
ARHGEF1-221ENST00000600387 SOGA1O94964 1423 aa28■■■□□ 2.07
ARHGEF1-221ENST00000600387 TTBK1Q5TCY1 1321 aaPredicted RBP27.99■■■□□ 2.07
ARHGEF1-221ENST00000600387 CSRNP3Q8WYN3 585 aa27.94■■■□□ 2.06
ARHGEF1-221ENST00000600387 GOLGA3Q08378 1498 aa27.91■■■□□ 2.06
ARHGEF1-221ENST00000600387 UBTFP17480 764 aaKnown RBP27.86■■■□□ 2.05
ARHGEF1-221ENST00000600387 RUSC2Q8N2Y8 1516 aa27.82■■■□□ 2.04
ARHGEF1-221ENST00000600387 UNC13AQ9UPW8 1703 aa27.71■■■□□ 2.03
ARHGEF1-221ENST00000600387 YTHDC1Q96MU7 727 aaKnown RBP27.71■■■□□ 2.03
ARHGEF1-221ENST00000600387 KIF21BO75037 1637 aa27.71■■■□□ 2.03
ARHGEF1-221ENST00000600387 MIER1Q8N108 512 aa27.69■■■□□ 2.02
ARHGEF1-221ENST00000600387 CEP164Q9UPV0 1460 aa27.69■■■□□ 2.02
ARHGEF1-221ENST00000600387 HNRNPUL2Q1KMD3 747 aaKnown RBP27.58■■■□□ 2.01
ARHGEF1-221ENST00000600387 CLIP1P30622 1438 aa27.57■■■□□ 2
ARHGEF1-221ENST00000600387 VPS8Q8N3P4 1428 aa27.56■■■□□ 2
ARHGEF1-221ENST00000600387 BAZ1BQ9UIG0 1483 aaKnown RBP27.54■■■□□ 2
ARHGEF1-221ENST00000600387 SYNJ1O43426 1573 aa27.5■■□□□ 1.99
ARHGEF1-221ENST00000600387 PEG3Q9GZU2 1588 aa27.48■■□□□ 1.99
ARHGEF1-221ENST00000600387 APLP2Q06481 763 aa27.44■■□□□ 1.98
ARHGEF1-221ENST00000600387 CLSPNQ9HAW4 1339 aa27.43■■□□□ 1.98
ARHGEF1-221ENST00000600387 RAPGEF2Q9Y4G8 1499 aa27.32■■□□□ 1.96
ARHGEF1-221ENST00000600387 DHX57Q6P158 1386 aaKnown RBP27.23■■□□□ 1.95
ARHGEF1-221ENST00000600387 BICRAQ9NZM4 1560 aa27.23■■□□□ 1.95
ARHGEF1-221ENST00000600387 TOP2BQ02880 1626 aa27.16■■□□□ 1.94
ARHGEF1-221ENST00000600387 ERICH3Q5RHP9 1530 aa27.15■■□□□ 1.94
ARHGEF1-221ENST00000600387 SUPT16HQ9Y5B9 1047 aaKnown RBP27.13■■□□□ 1.93
ARHGEF1-221ENST00000600387 ATAD2BQ9ULI0 1458 aa27.09■■□□□ 1.93
ARHGEF1-221ENST00000600387 BIVM-ERCC5R4GMW8 1640 aa27.08■■□□□ 1.93
ARHGEF1-221ENST00000600387 ARAP1Q96P48 1450 aa27.06■■□□□ 1.92
ARHGEF1-221ENST00000600387 RRBP1Q9P2E9 1410 aaKnown RBP27.04■■□□□ 1.92
ARHGEF1-221ENST00000600387 CUX2O14529 1486 aa27.03■■□□□ 1.92
ARHGEF1-221ENST00000600387 RANGAP1P46060 587 aaPredicted RBP27.02■■□□□ 1.92
ARHGEF1-221ENST00000600387 PABPN1Q86U42 306 aaKnown RBP eCLIP27.02■■□□□ 1.92
ARHGEF1-221ENST00000600387 PRXQ9BXM0 1461 aa27.02■■□□□ 1.92
ARHGEF1-221ENST00000600387 KANK4Q5T7N3 995 aaPredicted RBP26.92■■□□□ 1.9
ARHGEF1-221ENST00000600387 CCNB3Q8WWL7 1395 aa26.85■■□□□ 1.89
ARHGEF1-221ENST00000600387 TSHZ2Q9NRE2 1034 aa26.85■■□□□ 1.89
ARHGEF1-221ENST00000600387 KIF27Q86VH2 1401 aa26.75■■□□□ 1.87
ARHGEF1-221ENST00000600387 ANP32EQ9BTT0 268 aa26.72■■□□□ 1.87
ARHGEF1-221ENST00000600387 ARHGAP35Q9NRY4 1499 aa26.71■■□□□ 1.87
ARHGEF1-221ENST00000600387 MAPKBP1O60336 1514 aa26.7■■□□□ 1.87
ARHGEF1-221ENST00000600387 CUX1P39880 1505 aa26.69■■□□□ 1.86
ARHGEF1-221ENST00000600387 RAB3GAP2Q9H2M9 1393 aa26.67■■□□□ 1.86
ARHGEF1-221ENST00000600387 MAP3K1Q13233 1512 aa26.66■■□□□ 1.86
ARHGEF1-221ENST00000600387 TIAM1Q13009 1591 aa26.6■■□□□ 1.85
ARHGEF1-221ENST00000600387 KCNH8Q96L42 1107 aa26.59■■□□□ 1.85
ARHGEF1-221ENST00000600387 SETD5Q9C0A6 1442 aa26.58■■□□□ 1.85
ARHGEF1-221ENST00000600387 ITGAEP38570 1179 aa26.58■■□□□ 1.84
ARHGEF1-221ENST00000600387 HMGXB3Q12766 1538 aa26.57■■□□□ 1.84
ARHGEF1-221ENST00000600387 WDR97A6NE52 1622 aa26.53■■□□□ 1.84
ARHGEF1-221ENST00000600387 TIMELESSQ9UNS1 1208 aa26.5■■□□□ 1.83
ARHGEF1-221ENST00000600387 FKBP8Q14318 412 aa26.49■■□□□ 1.83
ARHGEF1-221ENST00000600387 NCAPD3P42695 1498 aa26.47■■□□□ 1.83
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms