RNA–Protein interactions for RNA: ENST00000597304.5

ZNF558-205, Transcript of zinc finger protein 558, humanhuman

TSL 5

Gene ZNF558, Length 2,612 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF558-205ENST00000597304 NISCHQ9Y2I1 1504 aa24.78■■□□□ 1.56
ZNF558-205ENST00000597304 SHROOM4Q9ULL8 1493 aa21.49■■□□□ 1.03
ZNF558-205ENST00000597304 SUPT5HO00267 1087 aaKnown RBP21.28■■□□□ 1
ZNF558-205ENST00000597304 HRCP23327 699 aa21.1■□□□□ 0.97
ZNF558-205ENST00000597304 ZCCHC6Q5VYS8 1495 aaKnown RBP21.06■□□□□ 0.96
ZNF558-205ENST00000597304 MYO15BQ96JP2 1530 aa20.98■□□□□ 0.95
ZNF558-205ENST00000597304 CHIC1Q5VXU3 224 aa20.9■□□□□ 0.94
ZNF558-205ENST00000597304 CCDC180Q9P1Z9 1646 aa20.88■□□□□ 0.93
ZNF558-205ENST00000597304 PCGF6Q9BYE7 350 aa20.76■□□□□ 0.91
ZNF558-205ENST00000597304 DCAF1Q9Y4B6 1507 aa20.58■□□□□ 0.88
ZNF558-205ENST00000597304 PPARGC1BQ86YN6 1023 aaKnown RBP20.57■□□□□ 0.88
ZNF558-205ENST00000597304 DCAF8L2P0C7V8 631 aa20.41■□□□□ 0.86
ZNF558-205ENST00000597304 LOC105371045A0A1W2PR82 267 aa20.3■□□□□ 0.84
ZNF558-205ENST00000597304 TRIM26Q12899 539 aaPredicted RBP20.26■□□□□ 0.83
ZNF558-205ENST00000597304 ZEB1P37275 1124 aaPredicted RBP20.05■□□□□ 0.8
ZNF558-205ENST00000597304 ABCC9O60706 1549 aa20■□□□□ 0.79
ZNF558-205ENST00000597304 PELP1Q8IZL8 1130 aaKnown RBP19.97■□□□□ 0.79
ZNF558-205ENST00000597304 TRIM41Q8WV44 630 aa19.78■□□□□ 0.76
ZNF558-205ENST00000597304 RSF1Q96T23 1441 aaPredicted RBP19.78■□□□□ 0.76
ZNF558-205ENST00000597304 SCAF1Q9H7N4 1312 aaKnown RBP19.74■□□□□ 0.75
ZNF558-205ENST00000597304 RB1CC1Q8TDY2 1594 aa19.7■□□□□ 0.74
ZNF558-205ENST00000597304 SCRIBQ14160 1630 aa19.66■□□□□ 0.74
ZNF558-205ENST00000597304 FAM9AQ8IZU1 332 aaPredicted RBP19.65■□□□□ 0.74
ZNF558-205ENST00000597304 EHMT2Q96KQ7 1210 aa19.48■□□□□ 0.71
ZNF558-205ENST00000597304 ACIN1Q9UKV3 1341 aaKnown RBP19.4■□□□□ 0.7
ZNF558-205ENST00000597304 CCER1Q8TC90 406 aaPredicted RBP19.35■□□□□ 0.69
ZNF558-205ENST00000597304 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.35■□□□□ 0.69
ZNF558-205ENST00000597304 NEUROD1Q13562 356 aa19.31■□□□□ 0.68
ZNF558-205ENST00000597304 CECR2Q9BXF3 1484 aa19.29■□□□□ 0.68
ZNF558-205ENST00000597304 MROH2BQ7Z745 1585 aa19.29■□□□□ 0.68
ZNF558-205ENST00000597304 CENPBP07199 599 aaPredicted RBP19.25■□□□□ 0.67
ZNF558-205ENST00000597304 WIZO95785 1651 aa19.24■□□□□ 0.67
ZNF558-205ENST00000597304 DIEXFQ68CQ4 756 aaKnown RBP19.23■□□□□ 0.67
ZNF558-205ENST00000597304 GTF3C3Q9Y5Q9 886 aa19.19■□□□□ 0.66
ZNF558-205ENST00000597304 EIF4G1Q04637 1599 aaKnown RBP19.19■□□□□ 0.66
ZNF558-205ENST00000597304 BAZ1AQ9NRL2 1556 aaPredicted RBP19.17■□□□□ 0.66
ZNF558-205ENST00000597304 NACADO15069 1562 aa19.17■□□□□ 0.66
ZNF558-205ENST00000597304 WRNQ14191 1432 aaPredicted RBP eCLIP19.13■□□□□ 0.65
ZNF558-205ENST00000597304 MYT1Q01538 1121 aa19.13■□□□□ 0.65
ZNF558-205ENST00000597304 CEP162Q5TB80 1403 aa19.03■□□□□ 0.64
ZNF558-205ENST00000597304 TTBK1Q5TCY1 1321 aaPredicted RBP18.99■□□□□ 0.63
ZNF558-205ENST00000597304 ABCC8Q09428 1581 aa18.98■□□□□ 0.63
ZNF558-205ENST00000597304 CCDC88BA6NC98 1476 aa18.97■□□□□ 0.63
ZNF558-205ENST00000597304 ZNF316A6NFI3 1004 aaPredicted RBP18.96■□□□□ 0.63
ZNF558-205ENST00000597304 TNIKQ9UKE5 1360 aa18.95■□□□□ 0.62
ZNF558-205ENST00000597304 TOP2AP11388 1531 aaKnown RBP18.94■□□□□ 0.62
ZNF558-205ENST00000597304 EEA1Q15075 1411 aa18.87■□□□□ 0.61
ZNF558-205ENST00000597304 SOGA1O94964 1423 aa18.87■□□□□ 0.61
ZNF558-205ENST00000597304 SMARCA2P51531 1590 aa18.85■□□□□ 0.61
ZNF558-205ENST00000597304 YTHDC1Q96MU7 727 aaKnown RBP18.82■□□□□ 0.6
ZNF558-205ENST00000597304 SMARCA4P51532 1647 aa18.8■□□□□ 0.6
ZNF558-205ENST00000597304 CSRNP3Q8WYN3 585 aa18.79■□□□□ 0.6
ZNF558-205ENST00000597304 UBTFP17480 764 aaKnown RBP18.79■□□□□ 0.6
ZNF558-205ENST00000597304 GOLGA3Q08378 1498 aa18.78■□□□□ 0.6
ZNF558-205ENST00000597304 RUSC2Q8N2Y8 1516 aa18.75■□□□□ 0.59
ZNF558-205ENST00000597304 MIER1Q8N108 512 aa18.73■□□□□ 0.59
ZNF558-205ENST00000597304 HNRNPUL2Q1KMD3 747 aaKnown RBP18.65■□□□□ 0.58
ZNF558-205ENST00000597304 CEP164Q9UPV0 1460 aa18.62■□□□□ 0.57
ZNF558-205ENST00000597304 KIF21BO75037 1637 aa18.62■□□□□ 0.57
ZNF558-205ENST00000597304 CLIP1P30622 1438 aa18.57■□□□□ 0.56
ZNF558-205ENST00000597304 VPS8Q8N3P4 1428 aa18.56■□□□□ 0.56
ZNF558-205ENST00000597304 UNC13AQ9UPW8 1703 aa18.55■□□□□ 0.56
ZNF558-205ENST00000597304 APLP2Q06481 763 aa18.5■□□□□ 0.55
ZNF558-205ENST00000597304 SYNJ1O43426 1573 aa18.5■□□□□ 0.55
ZNF558-205ENST00000597304 BAZ1BQ9UIG0 1483 aaKnown RBP18.49■□□□□ 0.55
ZNF558-205ENST00000597304 CLSPNQ9HAW4 1339 aa18.49■□□□□ 0.55
ZNF558-205ENST00000597304 RAPGEF2Q9Y4G8 1499 aa18.4■□□□□ 0.54
ZNF558-205ENST00000597304 PEG3Q9GZU2 1588 aa18.39■□□□□ 0.54
ZNF558-205ENST00000597304 DHX57Q6P158 1386 aaKnown RBP18.37■□□□□ 0.53
ZNF558-205ENST00000597304 SUPT16HQ9Y5B9 1047 aaKnown RBP18.36■□□□□ 0.53
ZNF558-205ENST00000597304 RANGAP1P46060 587 aaPredicted RBP18.29■□□□□ 0.52
ZNF558-205ENST00000597304 BICRAQ9NZM4 1560 aa18.24■□□□□ 0.51
ZNF558-205ENST00000597304 TOP2BQ02880 1626 aa18.23■□□□□ 0.51
ZNF558-205ENST00000597304 ERICH3Q5RHP9 1530 aa18.23■□□□□ 0.51
ZNF558-205ENST00000597304 ARAP1Q96P48 1450 aa18.22■□□□□ 0.51
ZNF558-205ENST00000597304 RRBP1Q9P2E9 1410 aaKnown RBP18.19■□□□□ 0.5
ZNF558-205ENST00000597304 TSHZ2Q9NRE2 1034 aa18.19■□□□□ 0.5
ZNF558-205ENST00000597304 PABPN1Q86U42 306 aaKnown RBP eCLIP18.18■□□□□ 0.5
ZNF558-205ENST00000597304 CUX2O14529 1486 aa18.17■□□□□ 0.5
ZNF558-205ENST00000597304 ATAD2BQ9ULI0 1458 aa18.17■□□□□ 0.5
ZNF558-205ENST00000597304 BIVM-ERCC5R4GMW8 1640 aa18.16■□□□□ 0.5
ZNF558-205ENST00000597304 KANK4Q5T7N3 995 aaPredicted RBP18.15■□□□□ 0.5
ZNF558-205ENST00000597304 PRXQ9BXM0 1461 aa18.15■□□□□ 0.5
ZNF558-205ENST00000597304 ANP32EQ9BTT0 268 aa18.11■□□□□ 0.49
ZNF558-205ENST00000597304 CCNB3Q8WWL7 1395 aa18.09■□□□□ 0.49
ZNF558-205ENST00000597304 KCNH8Q96L42 1107 aa18.02■□□□□ 0.47
ZNF558-205ENST00000597304 MAPKBP1O60336 1514 aa18.01■□□□□ 0.47
ZNF558-205ENST00000597304 RAB3GAP2Q9H2M9 1393 aa17.99■□□□□ 0.47
ZNF558-205ENST00000597304 ITGAEP38570 1179 aa17.98■□□□□ 0.47
ZNF558-205ENST00000597304 ARHGAP35Q9NRY4 1499 aa17.98■□□□□ 0.47
ZNF558-205ENST00000597304 KIF27Q86VH2 1401 aa17.97■□□□□ 0.47
ZNF558-205ENST00000597304 BCANQ96GW7 911 aa17.96■□□□□ 0.47
ZNF558-205ENST00000597304 FKBP8Q14318 412 aa17.94■□□□□ 0.46
ZNF558-205ENST00000597304 CUX1P39880 1505 aa17.93■□□□□ 0.46
ZNF558-205ENST00000597304 WDR97A6NE52 1622 aa17.9■□□□□ 0.46
ZNF558-205ENST00000597304 SETD5Q9C0A6 1442 aa17.9■□□□□ 0.46
ZNF558-205ENST00000597304 TIAM1Q13009 1591 aa17.89■□□□□ 0.46
ZNF558-205ENST00000597304 DDX10Q13206 875 aaKnown RBP17.89■□□□□ 0.45
ZNF558-205ENST00000597304 MAP3K1Q13233 1512 aa17.88■□□□□ 0.45
ZNF558-205ENST00000597304 NEFLP07196 543 aa17.87■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 73.6 ms