RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 NISCHQ9Y2I1 1504 aa19.17■□□□□ 0.66
LIG3-216ENST00000593099 DCAF8L2P0C7V8 631 aa18.32■□□□□ 0.52
LIG3-216ENST00000593099 SHROOM4Q9ULL8 1493 aa17.06■□□□□ 0.32
LIG3-216ENST00000593099 SUPT5HO00267 1087 aaKnown RBP16.89■□□□□ 0.29
LIG3-216ENST00000593099 ABCC9O60706 1549 aa16.65■□□□□ 0.26
LIG3-216ENST00000593099 CCDC180Q9P1Z9 1646 aa16.2■□□□□ 0.18
LIG3-216ENST00000593099 PABPN1Q86U42 306 aaKnown RBP eCLIP16.16■□□□□ 0.18
LIG3-216ENST00000593099 EHMT2Q96KQ7 1210 aa15.92■□□□□ 0.14
LIG3-216ENST00000593099 ZCCHC6Q5VYS8 1495 aaKnown RBP15.88■□□□□ 0.13
LIG3-216ENST00000593099 FAM9AQ8IZU1 332 aaPredicted RBP15.81■□□□□ 0.12
LIG3-216ENST00000593099 TRIM41Q8WV44 630 aa15.81■□□□□ 0.12
LIG3-216ENST00000593099 RB1CC1Q8TDY2 1594 aa15.75■□□□□ 0.11
LIG3-216ENST00000593099 SCRIBQ14160 1630 aa15.69■□□□□ 0.1
LIG3-216ENST00000593099 NACADO15069 1562 aa15.66■□□□□ 0.1
LIG3-216ENST00000593099 APLP2Q06481 763 aa15.65■□□□□ 0.1
LIG3-216ENST00000593099 RANGAP1P46060 587 aaPredicted RBP15.52■□□□□ 0.08
LIG3-216ENST00000593099 UBTFP17480 764 aaKnown RBP15.5■□□□□ 0.07
LIG3-216ENST00000593099 DCAF1Q9Y4B6 1507 aa15.42■□□□□ 0.06
LIG3-216ENST00000593099 MYT1Q01538 1121 aa15.41■□□□□ 0.06
LIG3-216ENST00000593099 ATP1B4Q9UN42 357 aaPredicted RBP15.4■□□□□ 0.06
LIG3-216ENST00000593099 CHIC1Q5VXU3 224 aa15.26■□□□□ 0.03
LIG3-216ENST00000593099 TTBK1Q5TCY1 1321 aaPredicted RBP15.24■□□□□ 0.03
LIG3-216ENST00000593099 MYO15BQ96JP2 1530 aa15.2■□□□□ 0.02
LIG3-216ENST00000593099 PELP1Q8IZL8 1130 aaKnown RBP15.17■□□□□ 0.02
LIG3-216ENST00000593099 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.11■□□□□ 0.01
LIG3-216ENST00000593099 HNRNPUL2Q1KMD3 747 aaKnown RBP15.11■□□□□ 0.01
LIG3-216ENST00000593099 FBLN2P98095 1184 aa15.1■□□□□ 0.01
LIG3-216ENST00000593099 BAZ1BQ9UIG0 1483 aaKnown RBP15.06■□□□□ 0
LIG3-216ENST00000593099 RSF1Q96T23 1441 aaPredicted RBP15.06■□□□□ 0
LIG3-216ENST00000593099 BAZ1AQ9NRL2 1556 aaPredicted RBP15.03■□□□□ -0
LIG3-216ENST00000593099 CECR2Q9BXF3 1484 aa14.98□□□□□ -0.01
LIG3-216ENST00000593099 LOC105371045A0A1W2PR82 267 aa14.96□□□□□ -0.01
LIG3-216ENST00000593099 MYT1LQ9UL68 1186 aa14.9□□□□□ -0.02
LIG3-216ENST00000593099 CSRNP3Q8WYN3 585 aa14.88□□□□□ -0.03
LIG3-216ENST00000593099 PCGF6Q9BYE7 350 aa14.86□□□□□ -0.03
LIG3-216ENST00000593099 PPARGC1BQ86YN6 1023 aaKnown RBP14.84□□□□□ -0.03
LIG3-216ENST00000593099 ERCC6Q03468 1493 aa14.84□□□□□ -0.03
LIG3-216ENST00000593099 SMARCA2P51531 1590 aa14.82□□□□□ -0.04
LIG3-216ENST00000593099 MROH2BQ7Z745 1585 aa14.78□□□□□ -0.04
LIG3-216ENST00000593099 CHMP7Q8WUX9 453 aaPredicted RBP14.74□□□□□ -0.05
LIG3-216ENST00000593099 ITGAEP38570 1179 aa14.72□□□□□ -0.05
LIG3-216ENST00000593099 P3H3Q8IVL6 736 aa14.71□□□□□ -0.06
LIG3-216ENST00000593099 CCER1Q8TC90 406 aaPredicted RBP14.68□□□□□ -0.06
LIG3-216ENST00000593099 WRNQ14191 1432 aaPredicted RBP eCLIP14.67□□□□□ -0.06
LIG3-216ENST00000593099 ATAD2BQ9ULI0 1458 aa14.67□□□□□ -0.06
LIG3-216ENST00000593099 PDS5BQ9NTI5 1447 aa14.67□□□□□ -0.06
LIG3-216ENST00000593099 NPM1P06748 294 aaKnown RBP eCLIP14.63□□□□□ -0.07
LIG3-216ENST00000593099 ARID3CA6NKF2 412 aa14.6□□□□□ -0.07
LIG3-216ENST00000593099 CDK11AQ9UQ88 783 aaPredicted RBP14.59□□□□□ -0.07
LIG3-216ENST00000593099 CCDC88BA6NC98 1476 aa14.59□□□□□ -0.07
LIG3-216ENST00000593099 SMARCA4P51532 1647 aa14.59□□□□□ -0.07
LIG3-216ENST00000593099 TRIM26Q12899 539 aaPredicted RBP14.59□□□□□ -0.07
LIG3-216ENST00000593099 CADPSQ9ULU8 1353 aa14.58□□□□□ -0.08
LIG3-216ENST00000593099 FAM50AQ14320 339 aaKnown RBP14.57□□□□□ -0.08
LIG3-216ENST00000593099 TOP2AP11388 1531 aaKnown RBP14.55□□□□□ -0.08
LIG3-216ENST00000593099 KIF27Q86VH2 1401 aa14.54□□□□□ -0.08
LIG3-216ENST00000593099 EIF4G1Q04637 1599 aaKnown RBP14.52□□□□□ -0.08
LIG3-216ENST00000593099 WIZO95785 1651 aa14.52□□□□□ -0.08
LIG3-216ENST00000593099 ZEB1P37275 1124 aaPredicted RBP14.52□□□□□ -0.09
LIG3-216ENST00000593099 EEA1Q15075 1411 aa14.51□□□□□ -0.09
LIG3-216ENST00000593099 NCAPD3P42695 1498 aa14.48□□□□□ -0.09
LIG3-216ENST00000593099 CUX2O14529 1486 aa14.41□□□□□ -0.1
LIG3-216ENST00000593099 ZNF777Q9ULD5 760 aaPredicted RBP14.41□□□□□ -0.1
LIG3-216ENST00000593099 CEP164Q9UPV0 1460 aa14.4□□□□□ -0.1
LIG3-216ENST00000593099 SOGA1O94964 1423 aa14.4□□□□□ -0.1
LIG3-216ENST00000593099 TRIM52Q96A61 297 aa14.38□□□□□ -0.11
LIG3-216ENST00000593099 FANCD2Q9BXW9 1451 aa14.35□□□□□ -0.11
LIG3-216ENST00000593099 TDRD9Q8NDG6 1382 aaKnown RBP14.35□□□□□ -0.11
LIG3-216ENST00000593099 GOLGA3Q08378 1498 aa14.34□□□□□ -0.11
LIG3-216ENST00000593099 CARMIL1Q5VZK9 1371 aa14.34□□□□□ -0.11
LIG3-216ENST00000593099 BICRAQ9NZM4 1560 aa14.33□□□□□ -0.12
LIG3-216ENST00000593099 CC2D2AQ9P2K1 1620 aa14.33□□□□□ -0.12
LIG3-216ENST00000593099 CLIP1P30622 1438 aa14.32□□□□□ -0.12
LIG3-216ENST00000593099 ERICH6Q7L0X2 663 aa14.3□□□□□ -0.12
LIG3-216ENST00000593099 ABCC8Q09428 1581 aa14.29□□□□□ -0.12
LIG3-216ENST00000593099 DNAJC5BQ9UF47 199 aa14.28□□□□□ -0.12
LIG3-216ENST00000593099 PLEKHD1A6NEE1 506 aa14.28□□□□□ -0.12
LIG3-216ENST00000593099 MTUS2Q5JR59 1369 aa14.26□□□□□ -0.13
LIG3-216ENST00000593099 ESF1Q9H501 851 aaKnown RBP14.26□□□□□ -0.13
LIG3-216ENST00000593099 KCNH8Q96L42 1107 aa14.25□□□□□ -0.13
LIG3-216ENST00000593099 HMGXB3Q12766 1538 aa14.22□□□□□ -0.13
LIG3-216ENST00000593099 TNIKQ9UKE5 1360 aa14.2□□□□□ -0.14
LIG3-216ENST00000593099 TSPY4P0CV99 314 aa14.18□□□□□ -0.14
LIG3-216ENST00000593099 TSPY10P0CW01 314 aa14.18□□□□□ -0.14
LIG3-216ENST00000593099 CEP162Q5TB80 1403 aa14.17□□□□□ -0.14
LIG3-216ENST00000593099 POLR3GLQ9BT43 218 aa14.16□□□□□ -0.14
LIG3-216ENST00000593099 CARMIL2Q6F5E8 1435 aa14.15□□□□□ -0.14
LIG3-216ENST00000593099 CFTRP13569 1480 aa14.13□□□□□ -0.15
LIG3-216ENST00000593099 NESP48681 1621 aa14.12□□□□□ -0.15
LIG3-216ENST00000593099 NEUROD1Q13562 356 aa14.11□□□□□ -0.15
LIG3-216ENST00000593099 OSCARQ8IYS5 282 aa14.11□□□□□ -0.15
LIG3-216ENST00000593099 TRHP20396 242 aaPredicted RBP14.1□□□□□ -0.15
LIG3-216ENST00000593099 FGD5Q6ZNL6 1462 aa14.08□□□□□ -0.16
LIG3-216ENST00000593099 CHIC2Q9UKJ5 165 aa14.08□□□□□ -0.16
LIG3-216ENST00000593099 BCANQ96GW7 911 aa14.08□□□□□ -0.16
LIG3-216ENST00000593099 FHAD1B1AJZ9 1412 aa14.07□□□□□ -0.16
LIG3-216ENST00000593099 JPH4Q96JJ6 628 aa14.06□□□□□ -0.16
LIG3-216ENST00000593099 CFDP1Q9UEE9 299 aaPredicted RBP14.06□□□□□ -0.16
LIG3-216ENST00000593099 MRC2Q9UBG0 1479 aa14.06□□□□□ -0.16
LIG3-216ENST00000593099 PLPPR3Q6T4P5 718 aa14.05□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 58.2 ms