RNA–Protein interactions for RNA: ENST00000583438.1

PPP4R1-225, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 4

Gene PPP4R1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-225ENST00000583438 AEBP2Q6ZN18 517 aaPredicted RBP26.16■■□□□ 1.78
PPP4R1-225ENST00000583438 CHIC1Q5VXU3 224 aa25.74■■□□□ 1.71
PPP4R1-225ENST00000583438 PHF23Q9BUL5 403 aaPredicted RBP22.72■■□□□ 1.23
PPP4R1-225ENST00000583438 SENP3Q9H4L4 574 aaPredicted RBP22.05■■□□□ 1.12
PPP4R1-225ENST00000583438 PLPPR3Q6T4P5 718 aa20.98■□□□□ 0.95
PPP4R1-225ENST00000583438 FOXD1Q16676 465 aa20.5■□□□□ 0.87
PPP4R1-225ENST00000583438 NISCHQ9Y2I1 1504 aa20.37■□□□□ 0.85
PPP4R1-225ENST00000583438 PPP6R1Q9UPN7 881 aa19.97■□□□□ 0.79
PPP4R1-225ENST00000583438 ADRA2BP18089 450 aa19.95■□□□□ 0.78
PPP4R1-225ENST00000583438 PIAS4Q8N2W9 510 aaPredicted RBP19.36■□□□□ 0.69
PPP4R1-225ENST00000583438 MSH5O43196 834 aa18.73■□□□□ 0.59
PPP4R1-225ENST00000583438 PPP4R3CPQ6ZMV5 832 aa18.55■□□□□ 0.56
PPP4R1-225ENST00000583438 ABCC9O60706 1549 aa18.49■□□□□ 0.55
PPP4R1-225ENST00000583438 KCNA4P22459 653 aa18.44■□□□□ 0.54
PPP4R1-225ENST00000583438 CCDC180Q9P1Z9 1646 aa18.4■□□□□ 0.54
PPP4R1-225ENST00000583438 SCAF1Q9H7N4 1312 aaKnown RBP18.14■□□□□ 0.49
PPP4R1-225ENST00000583438 NCBP3Q53F19 620 aaKnown RBP18.07■□□□□ 0.48
PPP4R1-225ENST00000583438 MAPK8IP2Q13387 824 aaPredicted RBP18.05■□□□□ 0.48
PPP4R1-225ENST00000583438 CNKSR2Q8WXI2 1034 aa17.95■□□□□ 0.46
PPP4R1-225ENST00000583438 NPM3O75607 178 aaKnown RBP17.89■□□□□ 0.45
PPP4R1-225ENST00000583438 DMRT2Q9Y5R5 561 aa17.67■□□□□ 0.42
PPP4R1-225ENST00000583438 SLC4A1APQ9BWU0 796 aaKnown RBP17.57■□□□□ 0.4
PPP4R1-225ENST00000583438 DNAJC5BQ9UF47 199 aa17.55■□□□□ 0.4
PPP4R1-225ENST00000583438 RNF216Q9NWF9 866 aaPredicted RBP17.54■□□□□ 0.4
PPP4R1-225ENST00000583438 RB1CC1Q8TDY2 1594 aa17.48■□□□□ 0.39
PPP4R1-225ENST00000583438 HOXD11P31277 338 aaPredicted RBP17.42■□□□□ 0.38
PPP4R1-225ENST00000583438 EHMT2Q96KQ7 1210 aa17.4■□□□□ 0.38
PPP4R1-225ENST00000583438 UNC13AQ9UPW8 1703 aa17.4■□□□□ 0.38
PPP4R1-225ENST00000583438 NACADO15069 1562 aa17.32■□□□□ 0.36
PPP4R1-225ENST00000583438 BICRAQ9NZM4 1560 aa17.19■□□□□ 0.34
PPP4R1-225ENST00000583438 PABPN1Q86U42 306 aaKnown RBP eCLIP17.13■□□□□ 0.33
PPP4R1-225ENST00000583438 CSRNP3Q8WYN3 585 aa17.1■□□□□ 0.33
PPP4R1-225ENST00000583438 DCAF8L2P0C7V8 631 aa17.03■□□□□ 0.32
PPP4R1-225ENST00000583438 MYO15BQ96JP2 1530 aa17.02■□□□□ 0.32
PPP4R1-225ENST00000583438 POTEDQ86YR6 584 aa17.02■□□□□ 0.32
PPP4R1-225ENST00000583438 ZBTB22O15209 634 aa17.01■□□□□ 0.31
PPP4R1-225ENST00000583438 ZCCHC6Q5VYS8 1495 aaKnown RBP16.9■□□□□ 0.3
PPP4R1-225ENST00000583438 DCAF8L1A6NGE4 600 aa16.89■□□□□ 0.29
PPP4R1-225ENST00000583438 SLC4A2P04920 1241 aa16.86■□□□□ 0.29
PPP4R1-225ENST00000583438 FOXD4L1Q9NU39 408 aa16.86■□□□□ 0.29
PPP4R1-225ENST00000583438 SCRIBQ14160 1630 aa16.79■□□□□ 0.28
PPP4R1-225ENST00000583438 DCAF1Q9Y4B6 1507 aa16.78■□□□□ 0.28
PPP4R1-225ENST00000583438 CC2D2AQ9P2K1 1620 aa16.75■□□□□ 0.27
PPP4R1-225ENST00000583438 SHROOM4Q9ULL8 1493 aa16.67■□□□□ 0.26
PPP4R1-225ENST00000583438 EIF4G1Q04637 1599 aaKnown RBP16.66■□□□□ 0.26
PPP4R1-225ENST00000583438 CECR2Q9BXF3 1484 aa16.62■□□□□ 0.25
PPP4R1-225ENST00000583438 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.57■□□□□ 0.24
PPP4R1-225ENST00000583438 MYCNP04198 464 aaPredicted RBP16.48■□□□□ 0.23
PPP4R1-225ENST00000583438 U3KPZ7 1027 aaPredicted RBP16.39■□□□□ 0.21
PPP4R1-225ENST00000583438 ATXN8OSP0DMR3 200 aa16.22■□□□□ 0.19
PPP4R1-225ENST00000583438 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP16.16■□□□□ 0.18
PPP4R1-225ENST00000583438 HNRNPUL2Q1KMD3 747 aaKnown RBP16.16■□□□□ 0.18
PPP4R1-225ENST00000583438 SAMD1Q6SPF0 538 aaPredicted RBP16.14■□□□□ 0.17
PPP4R1-225ENST00000583438 RNF39Q9H2S5 420 aa16.12■□□□□ 0.17
PPP4R1-225ENST00000583438 ATF5Q9Y2D1 282 aaPredicted RBP16.12■□□□□ 0.17
PPP4R1-225ENST00000583438 DNAJC5Q9H3Z4 198 aa16.04■□□□□ 0.16
PPP4R1-225ENST00000583438 NCAPD3P42695 1498 aa15.99■□□□□ 0.15
PPP4R1-225ENST00000583438 SMARCA4P51532 1647 aa15.98■□□□□ 0.15
PPP4R1-225ENST00000583438 ATAD2BQ9ULI0 1458 aa15.96■□□□□ 0.14
PPP4R1-225ENST00000583438 NESP48681 1621 aa15.93■□□□□ 0.14
PPP4R1-225ENST00000583438 APLP2Q06481 763 aa15.91■□□□□ 0.14
PPP4R1-225ENST00000583438 CUX2O14529 1486 aa15.91■□□□□ 0.14
PPP4R1-225ENST00000583438 HMGXB3Q12766 1538 aa15.9■□□□□ 0.14
PPP4R1-225ENST00000583438 C1QBPQ07021 282 aaKnown RBP15.9■□□□□ 0.14
PPP4R1-225ENST00000583438 SPINK5Q9NQ38 1064 aaPredicted RBP15.86■□□□□ 0.13
PPP4R1-225ENST00000583438 SMARCA2P51531 1590 aa15.85■□□□□ 0.13
PPP4R1-225ENST00000583438 ERCC6Q03468 1493 aa15.84■□□□□ 0.13
PPP4R1-225ENST00000583438 THOC2Q8NI27 1593 aaKnown RBP15.83■□□□□ 0.13
PPP4R1-225ENST00000583438 PEG3Q9GZU2 1588 aa15.81■□□□□ 0.12
PPP4R1-225ENST00000583438 KIF21AQ7Z4S6 1674 aa15.79■□□□□ 0.12
PPP4R1-225ENST00000583438 ZNF219Q9P2Y4 722 aaPredicted RBP15.77■□□□□ 0.12
PPP4R1-225ENST00000583438 MROH2BQ7Z745 1585 aa15.77■□□□□ 0.11
PPP4R1-225ENST00000583438 BAZ1AQ9NRL2 1556 aaPredicted RBP15.77■□□□□ 0.11
PPP4R1-225ENST00000583438 BAZ1BQ9UIG0 1483 aaKnown RBP15.75■□□□□ 0.11
PPP4R1-225ENST00000583438 TRHP20396 242 aaPredicted RBP15.74■□□□□ 0.11
PPP4R1-225ENST00000583438 CAPN15O75808 1086 aa15.73■□□□□ 0.11
PPP4R1-225ENST00000583438 LAMC3Q9Y6N6 1575 aa15.67■□□□□ 0.1
PPP4R1-225ENST00000583438 WIZO95785 1651 aa15.63■□□□□ 0.09
PPP4R1-225ENST00000583438 POLA2Q14181 598 aa15.55■□□□□ 0.08
PPP4R1-225ENST00000583438 ABCB7O75027 752 aa15.5■□□□□ 0.07
PPP4R1-225ENST00000583438 WDR62O43379 1518 aa15.49■□□□□ 0.07
PPP4R1-225ENST00000583438 CACNB1Q02641 598 aaPredicted RBP15.49■□□□□ 0.07
PPP4R1-225ENST00000583438 PDS5BQ9NTI5 1447 aa15.45■□□□□ 0.06
PPP4R1-225ENST00000583438 CADPSQ9ULU8 1353 aa15.45■□□□□ 0.06
PPP4R1-225ENST00000583438 MRC2Q9UBG0 1479 aa15.45■□□□□ 0.06
PPP4R1-225ENST00000583438 DSG3P32926 999 aa15.44■□□□□ 0.06
PPP4R1-225ENST00000583438 FKBP8Q14318 412 aa15.42■□□□□ 0.06
PPP4R1-225ENST00000583438 MKRN4PQ13434 485 aaPredicted RBP15.41■□□□□ 0.06
PPP4R1-225ENST00000583438 CEP164Q9UPV0 1460 aa15.33■□□□□ 0.05
PPP4R1-225ENST00000583438 FANCD2Q9BXW9 1451 aa15.33■□□□□ 0.04
PPP4R1-225ENST00000583438 PRDM2Q13029 1718 aa15.32■□□□□ 0.04
PPP4R1-225ENST00000583438 TOP2AP11388 1531 aaKnown RBP15.32■□□□□ 0.04
PPP4R1-225ENST00000583438 URB2Q14146 1524 aaKnown RBP15.32■□□□□ 0.04
PPP4R1-225ENST00000583438 RSF1Q96T23 1441 aaPredicted RBP15.31■□□□□ 0.04
PPP4R1-225ENST00000583438 CFTRP13569 1480 aa15.31■□□□□ 0.04
PPP4R1-225ENST00000583438 FBLN2P98095 1184 aa15.3■□□□□ 0.04
PPP4R1-225ENST00000583438 TRIM41Q8WV44 630 aa15.25■□□□□ 0.03
PPP4R1-225ENST00000583438 ZBTB12Q9Y330 459 aaPredicted RBP15.22■□□□□ 0.03
PPP4R1-225ENST00000583438 ZNF608Q9ULD9 1512 aaPredicted RBP15.16■□□□□ 0.02
PPP4R1-225ENST00000583438 RIMBP3CA6NJZ7 1639 aa15.14■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms