RNA–Protein interactions for RNA: ENST00000569144.5

CDH13-212, Transcript of cadherin 13, humanhuman

TSL 4

Gene CDH13, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH13-212ENST00000569144 AEBP2Q6ZN18 517 aaPredicted RBP20.36■□□□□ 0.85
CDH13-212ENST00000569144 CHIC1Q5VXU3 224 aa19.85■□□□□ 0.77
CDH13-212ENST00000569144 PHF23Q9BUL5 403 aaPredicted RBP17.45■□□□□ 0.38
CDH13-212ENST00000569144 SENP3Q9H4L4 574 aaPredicted RBP17.28■□□□□ 0.36
CDH13-212ENST00000569144 PLPPR3Q6T4P5 718 aa16.1■□□□□ 0.17
CDH13-212ENST00000569144 FOXD1Q16676 465 aa16.05■□□□□ 0.16
CDH13-212ENST00000569144 ADRA2BP18089 450 aa15.42■□□□□ 0.06
CDH13-212ENST00000569144 PPP6R1Q9UPN7 881 aa15.42■□□□□ 0.06
CDH13-212ENST00000569144 NISCHQ9Y2I1 1504 aa15.2■□□□□ 0.02
CDH13-212ENST00000569144 PIAS4Q8N2W9 510 aaPredicted RBP15.14■□□□□ 0.01
CDH13-212ENST00000569144 MSH5O43196 834 aa14.81□□□□□ -0.04
CDH13-212ENST00000569144 PPP4R3CPQ6ZMV5 832 aa14.2□□□□□ -0.14
CDH13-212ENST00000569144 ABCC9O60706 1549 aa14.15□□□□□ -0.14
CDH13-212ENST00000569144 SCAF1Q9H7N4 1312 aaKnown RBP14.09□□□□□ -0.15
CDH13-212ENST00000569144 MAPK8IP2Q13387 824 aaPredicted RBP14□□□□□ -0.17
CDH13-212ENST00000569144 KCNA4P22459 653 aa13.84□□□□□ -0.19
CDH13-212ENST00000569144 NCBP3Q53F19 620 aaKnown RBP13.81□□□□□ -0.2
CDH13-212ENST00000569144 CCDC180Q9P1Z9 1646 aa13.8□□□□□ -0.2
CDH13-212ENST00000569144 CNKSR2Q8WXI2 1034 aa13.8□□□□□ -0.2
CDH13-212ENST00000569144 DMRT2Q9Y5R5 561 aa13.79□□□□□ -0.2
CDH13-212ENST00000569144 NPM3O75607 178 aaKnown RBP13.61□□□□□ -0.23
CDH13-212ENST00000569144 DNAJC5BQ9UF47 199 aa13.61□□□□□ -0.23
CDH13-212ENST00000569144 POTEDQ86YR6 584 aa13.56□□□□□ -0.24
CDH13-212ENST00000569144 RNF216Q9NWF9 866 aaPredicted RBP13.53□□□□□ -0.24
CDH13-212ENST00000569144 HOXD11P31277 338 aaPredicted RBP13.47□□□□□ -0.25
CDH13-212ENST00000569144 RB1CC1Q8TDY2 1594 aa13.32□□□□□ -0.28
CDH13-212ENST00000569144 DCAF8L1A6NGE4 600 aa13.24□□□□□ -0.29
CDH13-212ENST00000569144 SLC4A1APQ9BWU0 796 aaKnown RBP13.17□□□□□ -0.3
CDH13-212ENST00000569144 NACADO15069 1562 aa13.15□□□□□ -0.3
CDH13-212ENST00000569144 PABPN1Q86U42 306 aaKnown RBP eCLIP13.1□□□□□ -0.31
CDH13-212ENST00000569144 UNC13AQ9UPW8 1703 aa12.96□□□□□ -0.34
CDH13-212ENST00000569144 BICRAQ9NZM4 1560 aa12.94□□□□□ -0.34
CDH13-212ENST00000569144 DCAF8L2P0C7V8 631 aa12.94□□□□□ -0.34
CDH13-212ENST00000569144 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.88□□□□□ -0.35
CDH13-212ENST00000569144 MYO15BQ96JP2 1530 aa12.88□□□□□ -0.35
CDH13-212ENST00000569144 SLC4A2P04920 1241 aa12.85□□□□□ -0.35
CDH13-212ENST00000569144 CECR2Q9BXF3 1484 aa12.8□□□□□ -0.36
CDH13-212ENST00000569144 DNAJC5Q9H3Z4 198 aa12.8□□□□□ -0.36
CDH13-212ENST00000569144 SHROOM4Q9ULL8 1493 aa12.78□□□□□ -0.36
CDH13-212ENST00000569144 EHMT2Q96KQ7 1210 aa12.78□□□□□ -0.36
CDH13-212ENST00000569144 CC2D2AQ9P2K1 1620 aa12.77□□□□□ -0.37
CDH13-212ENST00000569144 FOXD4L1Q9NU39 408 aa12.73□□□□□ -0.37
CDH13-212ENST00000569144 ZBTB22O15209 634 aa12.72□□□□□ -0.37
CDH13-212ENST00000569144 RNF39Q9H2S5 420 aa12.68□□□□□ -0.38
CDH13-212ENST00000569144 EIF4G1Q04637 1599 aaKnown RBP12.66□□□□□ -0.38
CDH13-212ENST00000569144 U3KPZ7 1027 aaPredicted RBP12.65□□□□□ -0.38
CDH13-212ENST00000569144 CSRNP3Q8WYN3 585 aa12.62□□□□□ -0.39
CDH13-212ENST00000569144 MYCNP04198 464 aaPredicted RBP12.58□□□□□ -0.4
CDH13-212ENST00000569144 DCAF1Q9Y4B6 1507 aa12.56□□□□□ -0.4
CDH13-212ENST00000569144 ZCCHC6Q5VYS8 1495 aaKnown RBP12.53□□□□□ -0.4
CDH13-212ENST00000569144 SCRIBQ14160 1630 aa12.52□□□□□ -0.4
CDH13-212ENST00000569144 C1QBPQ07021 282 aaKnown RBP12.52□□□□□ -0.41
CDH13-212ENST00000569144 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.47□□□□□ -0.41
CDH13-212ENST00000569144 HNRNPUL2Q1KMD3 747 aaKnown RBP12.47□□□□□ -0.41
CDH13-212ENST00000569144 SAMD1Q6SPF0 538 aaPredicted RBP12.43□□□□□ -0.42
CDH13-212ENST00000569144 CACNB1Q02641 598 aaPredicted RBP12.4□□□□□ -0.42
CDH13-212ENST00000569144 CUX2O14529 1486 aa12.4□□□□□ -0.43
CDH13-212ENST00000569144 APLP2Q06481 763 aa12.35□□□□□ -0.43
CDH13-212ENST00000569144 SPINK5Q9NQ38 1064 aaPredicted RBP12.32□□□□□ -0.44
CDH13-212ENST00000569144 CAPN15O75808 1086 aa12.29□□□□□ -0.44
CDH13-212ENST00000569144 ATXN8OSP0DMR3 200 aa12.27□□□□□ -0.45
CDH13-212ENST00000569144 ERCC6Q03468 1493 aa12.26□□□□□ -0.45
CDH13-212ENST00000569144 ATF5Q9Y2D1 282 aaPredicted RBP12.25□□□□□ -0.45
CDH13-212ENST00000569144 TRHP20396 242 aaPredicted RBP12.22□□□□□ -0.45
CDH13-212ENST00000569144 ZNF219Q9P2Y4 722 aaPredicted RBP12.19□□□□□ -0.46
CDH13-212ENST00000569144 NCAPD3P42695 1498 aa12.15□□□□□ -0.46
CDH13-212ENST00000569144 ABCB7O75027 752 aa12.06□□□□□ -0.48
CDH13-212ENST00000569144 DSG3P32926 999 aa12.06□□□□□ -0.48
CDH13-212ENST00000569144 TRIM41Q8WV44 630 aa12.05□□□□□ -0.48
CDH13-212ENST00000569144 ATAD2BQ9ULI0 1458 aa12.05□□□□□ -0.48
CDH13-212ENST00000569144 NESP48681 1621 aa12.04□□□□□ -0.48
CDH13-212ENST00000569144 HMGXB3Q12766 1538 aa12.03□□□□□ -0.48
CDH13-212ENST00000569144 THOC2Q8NI27 1593 aaKnown RBP12.02□□□□□ -0.49
CDH13-212ENST00000569144 POLA2Q14181 598 aa12□□□□□ -0.49
CDH13-212ENST00000569144 SMARCA2P51531 1590 aa12□□□□□ -0.49
CDH13-212ENST00000569144 SMARCA4P51532 1647 aa11.93□□□□□ -0.5
CDH13-212ENST00000569144 LAMC3Q9Y6N6 1575 aa11.92□□□□□ -0.5
CDH13-212ENST00000569144 BAZ1BQ9UIG0 1483 aaKnown RBP11.91□□□□□ -0.5
CDH13-212ENST00000569144 PDS5BQ9NTI5 1447 aa11.88□□□□□ -0.51
CDH13-212ENST00000569144 KIF21AQ7Z4S6 1674 aa11.86□□□□□ -0.51
CDH13-212ENST00000569144 PEG3Q9GZU2 1588 aa11.84□□□□□ -0.51
CDH13-212ENST00000569144 BAZ1AQ9NRL2 1556 aaPredicted RBP11.83□□□□□ -0.52
CDH13-212ENST00000569144 MRC2Q9UBG0 1479 aa11.8□□□□□ -0.52
CDH13-212ENST00000569144 ZBTB12Q9Y330 459 aaPredicted RBP11.79□□□□□ -0.52
CDH13-212ENST00000569144 WDR62O43379 1518 aa11.78□□□□□ -0.52
CDH13-212ENST00000569144 CADPSQ9ULU8 1353 aa11.76□□□□□ -0.53
CDH13-212ENST00000569144 FBLN2P98095 1184 aa11.74□□□□□ -0.53
CDH13-212ENST00000569144 OSCARQ8IYS5 282 aa11.74□□□□□ -0.53
CDH13-212ENST00000569144 MKRN4PQ13434 485 aaPredicted RBP11.71□□□□□ -0.53
CDH13-212ENST00000569144 MROH2BQ7Z745 1585 aa11.69□□□□□ -0.54
CDH13-212ENST00000569144 CEP164Q9UPV0 1460 aa11.67□□□□□ -0.54
CDH13-212ENST00000569144 FANCD2Q9BXW9 1451 aa11.62□□□□□ -0.55
CDH13-212ENST00000569144 RIMBP3CA6NJZ7 1639 aa11.61□□□□□ -0.55
CDH13-212ENST00000569144 RIMBP3BA6NNM3 1639 aa11.61□□□□□ -0.55
CDH13-212ENST00000569144 RIMBP3Q9UFD9 1639 aa11.61□□□□□ -0.55
CDH13-212ENST00000569144 ARHGEF11O15085 1522 aa11.55□□□□□ -0.56
CDH13-212ENST00000569144 CFTRP13569 1480 aa11.55□□□□□ -0.56
CDH13-212ENST00000569144 URB2Q14146 1524 aaKnown RBP11.54□□□□□ -0.56
CDH13-212ENST00000569144 WIZO95785 1651 aa11.51□□□□□ -0.57
CDH13-212ENST00000569144 RBM42Q9BTD8 480 aaKnown RBP11.49□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms