RNA–Protein interactions for RNA: ENST00000566510.5

CDH1-209, Transcript of cadherin 1, humanhuman

TSL 5

Gene CDH1, Length 2,661 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH1-209ENST00000566510 NISCHQ9Y2I1 1504 aa28.88■■■□□ 2.21
CDH1-209ENST00000566510 SHROOM4Q9ULL8 1493 aa25.03■■□□□ 1.6
CDH1-209ENST00000566510 SUPT5HO00267 1087 aaKnown RBP24.65■■□□□ 1.54
CDH1-209ENST00000566510 ZCCHC6Q5VYS8 1495 aaKnown RBP24.42■■□□□ 1.5
CDH1-209ENST00000566510 CCDC180Q9P1Z9 1646 aa24.38■■□□□ 1.49
CDH1-209ENST00000566510 DCAF8L2P0C7V8 631 aa24.29■■□□□ 1.48
CDH1-209ENST00000566510 CHIC1Q5VXU3 224 aa23.88■■□□□ 1.41
CDH1-209ENST00000566510 MYO15BQ96JP2 1530 aa23.81■■□□□ 1.4
CDH1-209ENST00000566510 DCAF1Q9Y4B6 1507 aa23.56■■□□□ 1.36
CDH1-209ENST00000566510 PCGF6Q9BYE7 350 aa23.46■■□□□ 1.35
CDH1-209ENST00000566510 HRCP23327 699 aa23.44■■□□□ 1.34
CDH1-209ENST00000566510 LOC105371045A0A1W2PR82 267 aa23.3■■□□□ 1.32
CDH1-209ENST00000566510 SCRIBQ14160 1630 aa23.08■■□□□ 1.28
CDH1-209ENST00000566510 ABCC9O60706 1549 aa23.08■■□□□ 1.28
CDH1-209ENST00000566510 PPARGC1BQ86YN6 1023 aaKnown RBP23.05■■□□□ 1.28
CDH1-209ENST00000566510 RSF1Q96T23 1441 aaPredicted RBP22.95■■□□□ 1.26
CDH1-209ENST00000566510 TRIM41Q8WV44 630 aa22.88■■□□□ 1.25
CDH1-209ENST00000566510 TRIM26Q12899 539 aaPredicted RBP22.86■■□□□ 1.25
CDH1-209ENST00000566510 FAM9AQ8IZU1 332 aaPredicted RBP22.81■■□□□ 1.24
CDH1-209ENST00000566510 RB1CC1Q8TDY2 1594 aa22.77■■□□□ 1.23
CDH1-209ENST00000566510 EHMT2Q96KQ7 1210 aa22.73■■□□□ 1.23
CDH1-209ENST00000566510 CECR2Q9BXF3 1484 aa22.59■■□□□ 1.21
CDH1-209ENST00000566510 NACADO15069 1562 aa22.55■■□□□ 1.2
CDH1-209ENST00000566510 MROH2BQ7Z745 1585 aa22.51■■□□□ 1.19
CDH1-209ENST00000566510 WIZO95785 1651 aa22.43■■□□□ 1.18
CDH1-209ENST00000566510 ZEB1P37275 1124 aaPredicted RBP22.4■■□□□ 1.18
CDH1-209ENST00000566510 BAZ1AQ9NRL2 1556 aaPredicted RBP22.2■■□□□ 1.14
CDH1-209ENST00000566510 EIF4G1Q04637 1599 aaKnown RBP22.02■■□□□ 1.12
CDH1-209ENST00000566510 ABCC8Q09428 1581 aa22.02■■□□□ 1.12
CDH1-209ENST00000566510 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP22.02■■□□□ 1.12
CDH1-209ENST00000566510 TTBK1Q5TCY1 1321 aaPredicted RBP22.01■■□□□ 1.11
CDH1-209ENST00000566510 TOP2AP11388 1531 aaKnown RBP21.99■■□□□ 1.11
CDH1-209ENST00000566510 CCER1Q8TC90 406 aaPredicted RBP21.98■■□□□ 1.11
CDH1-209ENST00000566510 CCDC88BA6NC98 1476 aa21.97■■□□□ 1.11
CDH1-209ENST00000566510 SMARCA4P51532 1647 aa21.96■■□□□ 1.11
CDH1-209ENST00000566510 SMARCA2P51531 1590 aa21.89■■□□□ 1.09
CDH1-209ENST00000566510 UNC13AQ9UPW8 1703 aa21.89■■□□□ 1.09
CDH1-209ENST00000566510 SOGA1O94964 1423 aa21.85■■□□□ 1.09
CDH1-209ENST00000566510 UBTFP17480 764 aaKnown RBP21.83■■□□□ 1.08
CDH1-209ENST00000566510 PABPN1Q86U42 306 aaKnown RBP eCLIP21.83■■□□□ 1.08
CDH1-209ENST00000566510 CEP162Q5TB80 1403 aa21.81■■□□□ 1.08
CDH1-209ENST00000566510 CSRNP3Q8WYN3 585 aa21.76■■□□□ 1.07
CDH1-209ENST00000566510 SCAF1Q9H7N4 1312 aaKnown RBP21.74■■□□□ 1.07
CDH1-209ENST00000566510 RUSC2Q8N2Y8 1516 aa21.73■■□□□ 1.07
CDH1-209ENST00000566510 WRNQ14191 1432 aaPredicted RBP eCLIP21.72■■□□□ 1.07
CDH1-209ENST00000566510 TNIKQ9UKE5 1360 aa21.71■■□□□ 1.07
CDH1-209ENST00000566510 EEA1Q15075 1411 aa21.65■■□□□ 1.06
CDH1-209ENST00000566510 DIEXFQ68CQ4 756 aaKnown RBP21.6■■□□□ 1.05
CDH1-209ENST00000566510 GOLGA3Q08378 1498 aa21.58■■□□□ 1.04
CDH1-209ENST00000566510 BICRAQ9NZM4 1560 aa21.56■■□□□ 1.04
CDH1-209ENST00000566510 RANGAP1P46060 587 aaPredicted RBP21.48■■□□□ 1.03
CDH1-209ENST00000566510 ACIN1Q9UKV3 1341 aaKnown RBP21.47■■□□□ 1.03
CDH1-209ENST00000566510 NEUROD1Q13562 356 aa21.46■■□□□ 1.03
CDH1-209ENST00000566510 HNRNPUL2Q1KMD3 747 aaKnown RBP21.45■■□□□ 1.02
CDH1-209ENST00000566510 SYNJ1O43426 1573 aa21.45■■□□□ 1.02
CDH1-209ENST00000566510 CEP164Q9UPV0 1460 aa21.43■■□□□ 1.02
CDH1-209ENST00000566510 PEG3Q9GZU2 1588 aa21.43■■□□□ 1.02
CDH1-209ENST00000566510 PELP1Q8IZL8 1130 aaKnown RBP21.4■■□□□ 1.02
CDH1-209ENST00000566510 CLIP1P30622 1438 aa21.39■■□□□ 1.01
CDH1-209ENST00000566510 BAZ1BQ9UIG0 1483 aaKnown RBP21.38■■□□□ 1.01
CDH1-209ENST00000566510 CENPBP07199 599 aaPredicted RBP21.38■■□□□ 1.01
CDH1-209ENST00000566510 APLP2Q06481 763 aa21.38■■□□□ 1.01
CDH1-209ENST00000566510 ATAD2BQ9ULI0 1458 aa21.37■■□□□ 1.01
CDH1-209ENST00000566510 ZNF316A6NFI3 1004 aaPredicted RBP21.35■■□□□ 1.01
CDH1-209ENST00000566510 KIF21BO75037 1637 aa21.34■■□□□ 1.01
CDH1-209ENST00000566510 GTF3C3Q9Y5Q9 886 aa21.3■■□□□ 1
CDH1-209ENST00000566510 RAPGEF2Q9Y4G8 1499 aa21.29■■□□□ 1
CDH1-209ENST00000566510 VPS8Q8N3P4 1428 aa21.26■□□□□ 0.99
CDH1-209ENST00000566510 YTHDC1Q96MU7 727 aaKnown RBP21.22■□□□□ 0.99
CDH1-209ENST00000566510 TOP2BQ02880 1626 aa21.13■□□□□ 0.97
CDH1-209ENST00000566510 MIER1Q8N108 512 aa21.1■□□□□ 0.97
CDH1-209ENST00000566510 BIVM-ERCC5R4GMW8 1640 aa21.02■□□□□ 0.96
CDH1-209ENST00000566510 KANK4Q5T7N3 995 aaPredicted RBP20.99■□□□□ 0.95
CDH1-209ENST00000566510 PRXQ9BXM0 1461 aa20.97■□□□□ 0.95
CDH1-209ENST00000566510 ERICH3Q5RHP9 1530 aa20.96■□□□□ 0.95
CDH1-209ENST00000566510 ARAP1Q96P48 1450 aa20.95■□□□□ 0.94
CDH1-209ENST00000566510 CUX1P39880 1505 aa20.93■□□□□ 0.94
CDH1-209ENST00000566510 KIF27Q86VH2 1401 aa20.91■□□□□ 0.94
CDH1-209ENST00000566510 ITGAEP38570 1179 aa20.89■□□□□ 0.93
CDH1-209ENST00000566510 NCAPD3P42695 1498 aa20.88■□□□□ 0.93
CDH1-209ENST00000566510 DHX57Q6P158 1386 aaKnown RBP20.88■□□□□ 0.93
CDH1-209ENST00000566510 HMGXB3Q12766 1538 aa20.86■□□□□ 0.93
CDH1-209ENST00000566510 CLSPNQ9HAW4 1339 aa20.83■□□□□ 0.93
CDH1-209ENST00000566510 CFTRP13569 1480 aa20.79■□□□□ 0.92
CDH1-209ENST00000566510 ARHGAP35Q9NRY4 1499 aa20.76■□□□□ 0.91
CDH1-209ENST00000566510 RRBP1Q9P2E9 1410 aaKnown RBP20.75■□□□□ 0.91
CDH1-209ENST00000566510 CCNB3Q8WWL7 1395 aa20.75■□□□□ 0.91
CDH1-209ENST00000566510 CUX2O14529 1486 aa20.71■□□□□ 0.91
CDH1-209ENST00000566510 IGF1RP08069 1367 aa20.66■□□□□ 0.9
CDH1-209ENST00000566510 ATP1B4Q9UN42 357 aaPredicted RBP20.65■□□□□ 0.9
CDH1-209ENST00000566510 P3H3Q8IVL6 736 aa20.62■□□□□ 0.89
CDH1-209ENST00000566510 CARMIL1Q5VZK9 1371 aa20.61■□□□□ 0.89
CDH1-209ENST00000566510 RAB3GAP2Q9H2M9 1393 aa20.6■□□□□ 0.89
CDH1-209ENST00000566510 FAM50AQ14320 339 aaKnown RBP20.59■□□□□ 0.89
CDH1-209ENST00000566510 PRDM2Q13029 1718 aa20.58■□□□□ 0.89
CDH1-209ENST00000566510 CADPSQ9ULU8 1353 aa20.57■□□□□ 0.88
CDH1-209ENST00000566510 FGD5Q6ZNL6 1462 aa20.56■□□□□ 0.88
CDH1-209ENST00000566510 TIAM1Q13009 1591 aa20.55■□□□□ 0.88
CDH1-209ENST00000566510 LRRC9Q6ZRR7 1453 aa20.5■□□□□ 0.87
CDH1-209ENST00000566510 PHLDB1Q86UU1 1377 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 396 ms