RNA–Protein interactions for RNA: ENST00000561393.5

AP4E1-205, Transcript of adaptor related protein complex 4 subunit epsilon 1, humanhuman

TSL 1 (best)

Gene AP4E1, Length 4,024 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
AP4E1-205ENST00000561393 NISCHQ9Y2I1 1504 aa32.15■■■□□ 2.74
AP4E1-205ENST00000561393 DCAF8L2P0C7V8 631 aa29.65■■■□□ 2.34
AP4E1-205ENST00000561393 SHROOM4Q9ULL8 1493 aa28.8■■■□□ 2.2
AP4E1-205ENST00000561393 SUPT5HO00267 1087 aaKnown RBP28.5■■■□□ 2.15
AP4E1-205ENST00000561393 ABCC9O60706 1549 aa26.9■■□□□ 1.9
AP4E1-205ENST00000561393 CCDC180Q9P1Z9 1646 aa26.88■■□□□ 1.89
AP4E1-205ENST00000561393 ZCCHC6Q5VYS8 1495 aaKnown RBP26.85■■□□□ 1.89
AP4E1-205ENST00000561393 EHMT2Q96KQ7 1210 aa26.83■■□□□ 1.89
AP4E1-205ENST00000561393 FAM9AQ8IZU1 332 aaPredicted RBP26.62■■□□□ 1.85
AP4E1-205ENST00000561393 TRIM41Q8WV44 630 aa26.43■■□□□ 1.82
AP4E1-205ENST00000561393 CHIC1Q5VXU3 224 aa26.42■■□□□ 1.82
AP4E1-205ENST00000561393 PABPN1Q86U42 306 aaKnown RBP eCLIP26.17■■□□□ 1.78
AP4E1-205ENST00000561393 SCRIBQ14160 1630 aa26.12■■□□□ 1.77
AP4E1-205ENST00000561393 PCGF6Q9BYE7 350 aa26.07■■□□□ 1.76
AP4E1-205ENST00000561393 LOC105371045A0A1W2PR82 267 aa26.02■■□□□ 1.76
AP4E1-205ENST00000561393 DCAF1Q9Y4B6 1507 aa25.81■■□□□ 1.72
AP4E1-205ENST00000561393 TTBK1Q5TCY1 1321 aaPredicted RBP25.8■■□□□ 1.72
AP4E1-205ENST00000561393 RANGAP1P46060 587 aaPredicted RBP25.7■■□□□ 1.7
AP4E1-205ENST00000561393 UBTFP17480 764 aaKnown RBP25.66■■□□□ 1.7
AP4E1-205ENST00000561393 NACADO15069 1562 aa25.58■■□□□ 1.69
AP4E1-205ENST00000561393 PPARGC1BQ86YN6 1023 aaKnown RBP25.55■■□□□ 1.68
AP4E1-205ENST00000561393 APLP2Q06481 763 aa25.53■■□□□ 1.68
AP4E1-205ENST00000561393 RB1CC1Q8TDY2 1594 aa25.52■■□□□ 1.68
AP4E1-205ENST00000561393 RSF1Q96T23 1441 aaPredicted RBP25.51■■□□□ 1.67
AP4E1-205ENST00000561393 CECR2Q9BXF3 1484 aa25.31■■□□□ 1.64
AP4E1-205ENST00000561393 TRIM26Q12899 539 aaPredicted RBP25.29■■□□□ 1.64
AP4E1-205ENST00000561393 MYO15BQ96JP2 1530 aa25.22■■□□□ 1.63
AP4E1-205ENST00000561393 CCER1Q8TC90 406 aaPredicted RBP25.06■■□□□ 1.6
AP4E1-205ENST00000561393 ATP1B4Q9UN42 357 aaPredicted RBP25.06■■□□□ 1.6
AP4E1-205ENST00000561393 HRCP23327 699 aa25.05■■□□□ 1.6
AP4E1-205ENST00000561393 MROH2BQ7Z745 1585 aa25.01■■□□□ 1.59
AP4E1-205ENST00000561393 BAZ1AQ9NRL2 1556 aaPredicted RBP24.94■■□□□ 1.58
AP4E1-205ENST00000561393 ZEB1P37275 1124 aaPredicted RBP24.92■■□□□ 1.58
AP4E1-205ENST00000561393 CSRNP3Q8WYN3 585 aa24.9■■□□□ 1.58
AP4E1-205ENST00000561393 WIZO95785 1651 aa24.7■■□□□ 1.55
AP4E1-205ENST00000561393 HNRNPUL2Q1KMD3 747 aaKnown RBP24.69■■□□□ 1.54
AP4E1-205ENST00000561393 BAZ1BQ9UIG0 1483 aaKnown RBP24.66■■□□□ 1.54
AP4E1-205ENST00000561393 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP24.64■■□□□ 1.53
AP4E1-205ENST00000561393 ITGAEP38570 1179 aa24.59■■□□□ 1.53
AP4E1-205ENST00000561393 CCDC88BA6NC98 1476 aa24.56■■□□□ 1.52
AP4E1-205ENST00000561393 WRNQ14191 1432 aaPredicted RBP eCLIP24.5■■□□□ 1.51
AP4E1-205ENST00000561393 SMARCA4P51532 1647 aa24.41■■□□□ 1.5
AP4E1-205ENST00000561393 ABCC8Q09428 1581 aa24.4■■□□□ 1.5
AP4E1-205ENST00000561393 TOP2AP11388 1531 aaKnown RBP24.39■■□□□ 1.49
AP4E1-205ENST00000561393 P3H3Q8IVL6 736 aa24.34■■□□□ 1.49
AP4E1-205ENST00000561393 SOGA1O94964 1423 aa24.33■■□□□ 1.49
AP4E1-205ENST00000561393 ATAD2BQ9ULI0 1458 aa24.26■■□□□ 1.47
AP4E1-205ENST00000561393 EEA1Q15075 1411 aa24.25■■□□□ 1.47
AP4E1-205ENST00000561393 SMARCA2P51531 1590 aa24.25■■□□□ 1.47
AP4E1-205ENST00000561393 CEP162Q5TB80 1403 aa24.22■■□□□ 1.47
AP4E1-205ENST00000561393 FAM50AQ14320 339 aaKnown RBP24.16■■□□□ 1.46
AP4E1-205ENST00000561393 GOLGA3Q08378 1498 aa24.16■■□□□ 1.46
AP4E1-205ENST00000561393 CLIP1P30622 1438 aa24.15■■□□□ 1.46
AP4E1-205ENST00000561393 TNIKQ9UKE5 1360 aa24.12■■□□□ 1.45
AP4E1-205ENST00000561393 FBLN2P98095 1184 aa24.09■■□□□ 1.45
AP4E1-205ENST00000561393 CEP164Q9UPV0 1460 aa24.03■■□□□ 1.44
AP4E1-205ENST00000561393 KIF27Q86VH2 1401 aa24.01■■□□□ 1.43
AP4E1-205ENST00000561393 ARID3CA6NKF2 412 aa24■■□□□ 1.43
AP4E1-205ENST00000561393 YTHDC1Q96MU7 727 aaKnown RBP23.97■■□□□ 1.43
AP4E1-205ENST00000561393 RUSC2Q8N2Y8 1516 aa23.95■■□□□ 1.43
AP4E1-205ENST00000561393 CENPBP07199 599 aaPredicted RBP23.93■■□□□ 1.42
AP4E1-205ENST00000561393 BICRAQ9NZM4 1560 aa23.93■■□□□ 1.42
AP4E1-205ENST00000561393 DIEXFQ68CQ4 756 aaKnown RBP23.86■■□□□ 1.41
AP4E1-205ENST00000561393 CUX2O14529 1486 aa23.84■■□□□ 1.41
AP4E1-205ENST00000561393 CADPSQ9ULU8 1353 aa23.82■■□□□ 1.4
AP4E1-205ENST00000561393 EIF4G1Q04637 1599 aaKnown RBP23.8■■□□□ 1.4
AP4E1-205ENST00000561393 NEUROD1Q13562 356 aa23.78■■□□□ 1.4
AP4E1-205ENST00000561393 NCAPD3P42695 1498 aa23.76■■□□□ 1.39
AP4E1-205ENST00000561393 UNC13AQ9UPW8 1703 aa23.75■■□□□ 1.39
AP4E1-205ENST00000561393 CARMIL1Q5VZK9 1371 aa23.72■■□□□ 1.39
AP4E1-205ENST00000561393 TRIM52Q96A61 297 aa23.68■■□□□ 1.38
AP4E1-205ENST00000561393 RAPGEF2Q9Y4G8 1499 aa23.68■■□□□ 1.38
AP4E1-205ENST00000561393 ZNF316A6NFI3 1004 aaPredicted RBP23.62■■□□□ 1.37
AP4E1-205ENST00000561393 VPS8Q8N3P4 1428 aa23.6■■□□□ 1.37
AP4E1-205ENST00000561393 TDRD9Q8NDG6 1382 aaKnown RBP23.58■■□□□ 1.37
AP4E1-205ENST00000561393 CHMP7Q8WUX9 453 aaPredicted RBP23.57■■□□□ 1.36
AP4E1-205ENST00000561393 MYT1LQ9UL68 1186 aa23.56■■□□□ 1.36
AP4E1-205ENST00000561393 MTUS2Q5JR59 1369 aa23.55■■□□□ 1.36
AP4E1-205ENST00000561393 KANK4Q5T7N3 995 aaPredicted RBP23.53■■□□□ 1.36
AP4E1-205ENST00000561393 SYNJ1O43426 1573 aa23.53■■□□□ 1.36
AP4E1-205ENST00000561393 PDS5BQ9NTI5 1447 aa23.52■■□□□ 1.36
AP4E1-205ENST00000561393 FANCD2Q9BXW9 1451 aa23.51■■□□□ 1.35
AP4E1-205ENST00000561393 ZNF777Q9ULD5 760 aaPredicted RBP23.51■■□□□ 1.35
AP4E1-205ENST00000561393 CDK11AQ9UQ88 783 aaPredicted RBP23.48■■□□□ 1.35
AP4E1-205ENST00000561393 CHIC2Q9UKJ5 165 aa23.46■■□□□ 1.35
AP4E1-205ENST00000561393 ERCC6Q03468 1493 aa23.45■■□□□ 1.34
AP4E1-205ENST00000561393 POLR3GLQ9BT43 218 aa23.45■■□□□ 1.34
AP4E1-205ENST00000561393 CFTRP13569 1480 aa23.44■■□□□ 1.34
AP4E1-205ENST00000561393 HMGXB3Q12766 1538 aa23.41■■□□□ 1.34
AP4E1-205ENST00000561393 PEG3Q9GZU2 1588 aa23.38■■□□□ 1.33
AP4E1-205ENST00000561393 FGD5Q6ZNL6 1462 aa23.38■■□□□ 1.33
AP4E1-205ENST00000561393 CNGB1Q14028 1251 aaPredicted RBP23.37■■□□□ 1.33
AP4E1-205ENST00000561393 CC2D2AQ9P2K1 1620 aa23.37■■□□□ 1.33
AP4E1-205ENST00000561393 PELP1Q8IZL8 1130 aaKnown RBP23.36■■□□□ 1.33
AP4E1-205ENST00000561393 IGF1RP08069 1367 aa23.35■■□□□ 1.33
AP4E1-205ENST00000561393 FHAD1B1AJZ9 1412 aa23.32■■□□□ 1.32
AP4E1-205ENST00000561393 RAD54L2Q9Y4B4 1467 aa23.32■■□□□ 1.32
AP4E1-205ENST00000561393 NESP48681 1621 aa23.32■■□□□ 1.32
AP4E1-205ENST00000561393 DNAJC5BQ9UF47 199 aa23.3■■□□□ 1.32
AP4E1-205ENST00000561393 CCNB3Q8WWL7 1395 aa23.3■■□□□ 1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms