RNA–Protein interactions for RNA: ENST00000558411.1

PCAT29-201, prostate cancer associated transcript 29, humanhuman

TSL 2 BASIC

Gene PCAT29, Length 2,121 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCAT29-201ENST00000558411 NISCHQ9Y2I1 1504 aa21.14■□□□□ 0.98
PCAT29-201ENST00000558411 HRCP23327 699 aa19.03■□□□□ 0.64
PCAT29-201ENST00000558411 PELP1Q8IZL8 1130 aaKnown RBP18.67■□□□□ 0.58
PCAT29-201ENST00000558411 MYO15BQ96JP2 1530 aa18.43■□□□□ 0.54
PCAT29-201ENST00000558411 PCGF6Q9BYE7 350 aa18.41■□□□□ 0.54
PCAT29-201ENST00000558411 SHROOM4Q9ULL8 1493 aa18.38■□□□□ 0.53
PCAT29-201ENST00000558411 SUPT5HO00267 1087 aaKnown RBP18.37■□□□□ 0.53
PCAT29-201ENST00000558411 PPARGC1BQ86YN6 1023 aaKnown RBP18.37■□□□□ 0.53
PCAT29-201ENST00000558411 DCAF1Q9Y4B6 1507 aa18.31■□□□□ 0.52
PCAT29-201ENST00000558411 CHIC1Q5VXU3 224 aa18.29■□□□□ 0.52
PCAT29-201ENST00000558411 CCDC180Q9P1Z9 1646 aa18.13■□□□□ 0.49
PCAT29-201ENST00000558411 MYT1Q01538 1121 aa18.06■□□□□ 0.48
PCAT29-201ENST00000558411 ZCCHC6Q5VYS8 1495 aaKnown RBP18.05■□□□□ 0.48
PCAT29-201ENST00000558411 ZEB1P37275 1124 aaPredicted RBP18■□□□□ 0.47
PCAT29-201ENST00000558411 TRIM26Q12899 539 aaPredicted RBP17.99■□□□□ 0.47
PCAT29-201ENST00000558411 SCAF1Q9H7N4 1312 aaKnown RBP17.94■□□□□ 0.46
PCAT29-201ENST00000558411 LOC105371045A0A1W2PR82 267 aa17.71■□□□□ 0.42
PCAT29-201ENST00000558411 ACIN1Q9UKV3 1341 aaKnown RBP17.56■□□□□ 0.4
PCAT29-201ENST00000558411 NEUROD1Q13562 356 aa17.41■□□□□ 0.38
PCAT29-201ENST00000558411 CENPBP07199 599 aaPredicted RBP17.38■□□□□ 0.37
PCAT29-201ENST00000558411 GTF3C3Q9Y5Q9 886 aa17.33■□□□□ 0.36
PCAT29-201ENST00000558411 ABCC9O60706 1549 aa17.26■□□□□ 0.35
PCAT29-201ENST00000558411 DIEXFQ68CQ4 756 aaKnown RBP17.17■□□□□ 0.34
PCAT29-201ENST00000558411 TRIM41Q8WV44 630 aa17.12■□□□□ 0.33
PCAT29-201ENST00000558411 DCAF8L2P0C7V8 631 aa17.11■□□□□ 0.33
PCAT29-201ENST00000558411 CCER1Q8TC90 406 aaPredicted RBP17.07■□□□□ 0.32
PCAT29-201ENST00000558411 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.02■□□□□ 0.31
PCAT29-201ENST00000558411 TTBK1Q5TCY1 1321 aaPredicted RBP17.01■□□□□ 0.31
PCAT29-201ENST00000558411 RB1CC1Q8TDY2 1594 aa16.98■□□□□ 0.31
PCAT29-201ENST00000558411 RSF1Q96T23 1441 aaPredicted RBP16.97■□□□□ 0.31
PCAT29-201ENST00000558411 FAM9AQ8IZU1 332 aaPredicted RBP16.91■□□□□ 0.3
PCAT29-201ENST00000558411 ZNF316A6NFI3 1004 aaPredicted RBP16.88■□□□□ 0.29
PCAT29-201ENST00000558411 WRNQ14191 1432 aaPredicted RBP eCLIP16.82■□□□□ 0.28
PCAT29-201ENST00000558411 CLSPNQ9HAW4 1339 aa16.81■□□□□ 0.28
PCAT29-201ENST00000558411 YTHDC1Q96MU7 727 aaKnown RBP16.71■□□□□ 0.27
PCAT29-201ENST00000558411 NACADO15069 1562 aa16.71■□□□□ 0.27
PCAT29-201ENST00000558411 EHMT2Q96KQ7 1210 aa16.67■□□□□ 0.26
PCAT29-201ENST00000558411 MIER1Q8N108 512 aa16.67■□□□□ 0.26
PCAT29-201ENST00000558411 ANP32EQ9BTT0 268 aa16.63■□□□□ 0.25
PCAT29-201ENST00000558411 SCRIBQ14160 1630 aa16.61■□□□□ 0.25
PCAT29-201ENST00000558411 EIF4G1Q04637 1599 aaKnown RBP16.58■□□□□ 0.25
PCAT29-201ENST00000558411 BCL11AQ9H165 835 aa16.58■□□□□ 0.24
PCAT29-201ENST00000558411 CEP162Q5TB80 1403 aa16.55■□□□□ 0.24
PCAT29-201ENST00000558411 SUPT16HQ9Y5B9 1047 aaKnown RBP16.54■□□□□ 0.24
PCAT29-201ENST00000558411 TNIKQ9UKE5 1360 aa16.51■□□□□ 0.23
PCAT29-201ENST00000558411 TSHZ2Q9NRE2 1034 aa16.49■□□□□ 0.23
PCAT29-201ENST00000558411 UNC13AQ9UPW8 1703 aa16.44■□□□□ 0.22
PCAT29-201ENST00000558411 MROH2BQ7Z745 1585 aa16.44■□□□□ 0.22
PCAT29-201ENST00000558411 BAZ1AQ9NRL2 1556 aaPredicted RBP16.44■□□□□ 0.22
PCAT29-201ENST00000558411 EEA1Q15075 1411 aa16.41■□□□□ 0.22
PCAT29-201ENST00000558411 WIZO95785 1651 aa16.41■□□□□ 0.22
PCAT29-201ENST00000558411 CECR2Q9BXF3 1484 aa16.38■□□□□ 0.21
PCAT29-201ENST00000558411 CSRNP3Q8WYN3 585 aa16.33■□□□□ 0.2
PCAT29-201ENST00000558411 CCDC88BA6NC98 1476 aa16.32■□□□□ 0.2
PCAT29-201ENST00000558411 ABCC8Q09428 1581 aa16.29■□□□□ 0.2
PCAT29-201ENST00000558411 GOLGA3Q08378 1498 aa16.29■□□□□ 0.2
PCAT29-201ENST00000558411 PABPN1Q86U42 306 aaKnown RBP eCLIP16.25■□□□□ 0.19
PCAT29-201ENST00000558411 BICRAQ9NZM4 1560 aa16.25■□□□□ 0.19
PCAT29-201ENST00000558411 SOGA1O94964 1423 aa16.24■□□□□ 0.19
PCAT29-201ENST00000558411 HNRNPUL2Q1KMD3 747 aaKnown RBP16.22■□□□□ 0.19
PCAT29-201ENST00000558411 TOP2AP11388 1531 aaKnown RBP16.2■□□□□ 0.18
PCAT29-201ENST00000558411 UBTFP17480 764 aaKnown RBP16.18■□□□□ 0.18
PCAT29-201ENST00000558411 KIF21BO75037 1637 aa16.16■□□□□ 0.18
PCAT29-201ENST00000558411 VPS8Q8N3P4 1428 aa16.15■□□□□ 0.18
PCAT29-201ENST00000558411 DHX57Q6P158 1386 aaKnown RBP16.13■□□□□ 0.17
PCAT29-201ENST00000558411 SMARCA2P51531 1590 aa16.12■□□□□ 0.17
PCAT29-201ENST00000558411 CEP164Q9UPV0 1460 aa16.12■□□□□ 0.17
PCAT29-201ENST00000558411 RUSC2Q8N2Y8 1516 aa16.11■□□□□ 0.17
PCAT29-201ENST00000558411 CLIP1P30622 1438 aa16.09■□□□□ 0.17
PCAT29-201ENST00000558411 RBM19Q9Y4C8 960 aaKnown RBP16.09■□□□□ 0.17
PCAT29-201ENST00000558411 BAZ1BQ9UIG0 1483 aaKnown RBP16.07■□□□□ 0.16
PCAT29-201ENST00000558411 APLP2Q06481 763 aa16.03■□□□□ 0.16
PCAT29-201ENST00000558411 FKBP8Q14318 412 aa16.02■□□□□ 0.16
PCAT29-201ENST00000558411 CUX2O14529 1486 aa16■□□□□ 0.15
PCAT29-201ENST00000558411 MYT1LQ9UL68 1186 aa15.98■□□□□ 0.15
PCAT29-201ENST00000558411 NEFLP07196 543 aa15.98■□□□□ 0.15
PCAT29-201ENST00000558411 SMARCA4P51532 1647 aa15.97■□□□□ 0.15
PCAT29-201ENST00000558411 BCANQ96GW7 911 aa15.97■□□□□ 0.15
PCAT29-201ENST00000558411 FANCIQ9NVI1 1328 aa15.96■□□□□ 0.15
PCAT29-201ENST00000558411 MSH5O43196 834 aa15.91■□□□□ 0.14
PCAT29-201ENST00000558411 PRKCSHP14314 528 aaPredicted RBP15.91■□□□□ 0.14
PCAT29-201ENST00000558411 RRBP1Q9P2E9 1410 aaKnown RBP15.91■□□□□ 0.14
PCAT29-201ENST00000558411 KCNH8Q96L42 1107 aa15.9■□□□□ 0.14
PCAT29-201ENST00000558411 CCER2I3L3R5 266 aa15.85■□□□□ 0.13
PCAT29-201ENST00000558411 SYNJ1O43426 1573 aa15.84■□□□□ 0.13
PCAT29-201ENST00000558411 RAPGEF2Q9Y4G8 1499 aa15.83■□□□□ 0.12
PCAT29-201ENST00000558411 ERICH6Q7L0X2 663 aa15.82■□□□□ 0.12
PCAT29-201ENST00000558411 MAPKBP1O60336 1514 aa15.79■□□□□ 0.12
PCAT29-201ENST00000558411 ERICH3Q5RHP9 1530 aa15.77■□□□□ 0.12
PCAT29-201ENST00000558411 PPP1R15AO75807 674 aaPredicted RBP15.77■□□□□ 0.11
PCAT29-201ENST00000558411 ARAP1Q96P48 1450 aa15.76■□□□□ 0.11
PCAT29-201ENST00000558411 ITGAEP38570 1179 aa15.76■□□□□ 0.11
PCAT29-201ENST00000558411 CDK11AQ9UQ88 783 aaPredicted RBP15.76■□□□□ 0.11
PCAT29-201ENST00000558411 CCNB3Q8WWL7 1395 aa15.74■□□□□ 0.11
PCAT29-201ENST00000558411 DDX10Q13206 875 aaKnown RBP15.73■□□□□ 0.11
PCAT29-201ENST00000558411 ERICH6BQ5W0A0 696 aa15.73■□□□□ 0.11
PCAT29-201ENST00000558411 WDR97A6NE52 1622 aa15.71■□□□□ 0.11
PCAT29-201ENST00000558411 TIMELESSQ9UNS1 1208 aa15.71■□□□□ 0.11
PCAT29-201ENST00000558411 ANP32CO43423 234 aa15.69■□□□□ 0.1
PCAT29-201ENST00000558411 DEKP35659 375 aaKnown RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms