RNA–Protein interactions for RNA: ENST00000555867.1

PSEN1-214, Transcript of presenilin 1, humanhuman

TSL 2

Gene PSEN1, Length 876 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PSEN1-214ENST00000555867 AEBP2Q6ZN18 517 aaPredicted RBP21.84■■□□□ 1.09
PSEN1-214ENST00000555867 CHIC1Q5VXU3 224 aa20.63■□□□□ 0.89
PSEN1-214ENST00000555867 SENP3Q9H4L4 574 aaPredicted RBP18.73■□□□□ 0.59
PSEN1-214ENST00000555867 PHF23Q9BUL5 403 aaPredicted RBP18.42■□□□□ 0.54
PSEN1-214ENST00000555867 FOXD1Q16676 465 aa17.42■□□□□ 0.38
PSEN1-214ENST00000555867 MSH5O43196 834 aa16.43■□□□□ 0.22
PSEN1-214ENST00000555867 PLPPR3Q6T4P5 718 aa16.43■□□□□ 0.22
PSEN1-214ENST00000555867 PIAS4Q8N2W9 510 aaPredicted RBP16.27■□□□□ 0.2
PSEN1-214ENST00000555867 POTEDQ86YR6 584 aa16.26■□□□□ 0.19
PSEN1-214ENST00000555867 PPP6R1Q9UPN7 881 aa16.13■□□□□ 0.17
PSEN1-214ENST00000555867 ADRA2BP18089 450 aa16.09■□□□□ 0.17
PSEN1-214ENST00000555867 NISCHQ9Y2I1 1504 aa15.06■□□□□ 0
PSEN1-214ENST00000555867 MAPK8IP2Q13387 824 aaPredicted RBP14.81□□□□□ -0.04
PSEN1-214ENST00000555867 DMRT2Q9Y5R5 561 aa14.81□□□□□ -0.04
PSEN1-214ENST00000555867 SCAF1Q9H7N4 1312 aaKnown RBP14.8□□□□□ -0.04
PSEN1-214ENST00000555867 PPP4R3CPQ6ZMV5 832 aa14.36□□□□□ -0.11
PSEN1-214ENST00000555867 ABCC9O60706 1549 aa14.29□□□□□ -0.12
PSEN1-214ENST00000555867 DCAF8L1A6NGE4 600 aa14.2□□□□□ -0.14
PSEN1-214ENST00000555867 HOXD11P31277 338 aaPredicted RBP14.2□□□□□ -0.14
PSEN1-214ENST00000555867 CACNB1Q02641 598 aaPredicted RBP14.17□□□□□ -0.14
PSEN1-214ENST00000555867 CNKSR2Q8WXI2 1034 aa14.15□□□□□ -0.14
PSEN1-214ENST00000555867 RNF216Q9NWF9 866 aaPredicted RBP14.06□□□□□ -0.16
PSEN1-214ENST00000555867 DNAJC5BQ9UF47 199 aa13.98□□□□□ -0.17
PSEN1-214ENST00000555867 RNF39Q9H2S5 420 aa13.97□□□□□ -0.17
PSEN1-214ENST00000555867 NCBP3Q53F19 620 aaKnown RBP13.8□□□□□ -0.2
PSEN1-214ENST00000555867 C1QBPQ07021 282 aaKnown RBP13.79□□□□□ -0.2
PSEN1-214ENST00000555867 CCDC180Q9P1Z9 1646 aa13.65□□□□□ -0.22
PSEN1-214ENST00000555867 NPM3O75607 178 aaKnown RBP13.55□□□□□ -0.24
PSEN1-214ENST00000555867 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.53□□□□□ -0.24
PSEN1-214ENST00000555867 PABPN1Q86U42 306 aaKnown RBP eCLIP13.27□□□□□ -0.29
PSEN1-214ENST00000555867 RB1CC1Q8TDY2 1594 aa13.27□□□□□ -0.29
PSEN1-214ENST00000555867 U3KPZ7 1027 aaPredicted RBP13.22□□□□□ -0.29
PSEN1-214ENST00000555867 DNAJC5Q9H3Z4 198 aa13.14□□□□□ -0.31
PSEN1-214ENST00000555867 KCNA4P22459 653 aa13.13□□□□□ -0.31
PSEN1-214ENST00000555867 CAPN15O75808 1086 aa13.07□□□□□ -0.32
PSEN1-214ENST00000555867 NACADO15069 1562 aa13.07□□□□□ -0.32
PSEN1-214ENST00000555867 SPINK5Q9NQ38 1064 aaPredicted RBP13.05□□□□□ -0.32
PSEN1-214ENST00000555867 UNC13AQ9UPW8 1703 aa13.03□□□□□ -0.32
PSEN1-214ENST00000555867 DSG3P32926 999 aa13.03□□□□□ -0.32
PSEN1-214ENST00000555867 DCAF8L2P0C7V8 631 aa13□□□□□ -0.33
PSEN1-214ENST00000555867 BICRAQ9NZM4 1560 aa12.99□□□□□ -0.33
PSEN1-214ENST00000555867 SLC4A2P04920 1241 aa12.97□□□□□ -0.33
PSEN1-214ENST00000555867 APLP2Q06481 763 aa12.92□□□□□ -0.34
PSEN1-214ENST00000555867 CECR2Q9BXF3 1484 aa12.9□□□□□ -0.34
PSEN1-214ENST00000555867 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.85□□□□□ -0.35
PSEN1-214ENST00000555867 HNRNPUL2Q1KMD3 747 aaKnown RBP12.85□□□□□ -0.35
PSEN1-214ENST00000555867 CC2D2AQ9P2K1 1620 aa12.84□□□□□ -0.35
PSEN1-214ENST00000555867 ZNF219Q9P2Y4 722 aaPredicted RBP12.83□□□□□ -0.36
PSEN1-214ENST00000555867 TRHP20396 242 aaPredicted RBP12.81□□□□□ -0.36
PSEN1-214ENST00000555867 SAMD1Q6SPF0 538 aaPredicted RBP12.75□□□□□ -0.37
PSEN1-214ENST00000555867 ABCB7O75027 752 aa12.72□□□□□ -0.37
PSEN1-214ENST00000555867 POTEHQ6S545 545 aa12.72□□□□□ -0.37
PSEN1-214ENST00000555867 MYO15BQ96JP2 1530 aa12.7□□□□□ -0.38
PSEN1-214ENST00000555867 EIF4G1Q04637 1599 aaKnown RBP12.68□□□□□ -0.38
PSEN1-214ENST00000555867 SHROOM4Q9ULL8 1493 aa12.63□□□□□ -0.39
PSEN1-214ENST00000555867 MYCNP04198 464 aaPredicted RBP12.58□□□□□ -0.4
PSEN1-214ENST00000555867 RBM42Q9BTD8 480 aaKnown RBP12.49□□□□□ -0.41
PSEN1-214ENST00000555867 SCRIBQ14160 1630 aa12.48□□□□□ -0.41
PSEN1-214ENST00000555867 CUX2O14529 1486 aa12.46□□□□□ -0.42
PSEN1-214ENST00000555867 POLA2Q14181 598 aa12.42□□□□□ -0.42
PSEN1-214ENST00000555867 SLC4A1APQ9BWU0 796 aaKnown RBP12.39□□□□□ -0.43
PSEN1-214ENST00000555867 DCAF1Q9Y4B6 1507 aa12.36□□□□□ -0.43
PSEN1-214ENST00000555867 ZCCHC6Q5VYS8 1495 aaKnown RBP12.35□□□□□ -0.43
PSEN1-214ENST00000555867 FOXD4L1Q9NU39 408 aa12.35□□□□□ -0.43
PSEN1-214ENST00000555867 TRIM41Q8WV44 630 aa12.34□□□□□ -0.43
PSEN1-214ENST00000555867 ERCC6Q03468 1493 aa12.31□□□□□ -0.44
PSEN1-214ENST00000555867 CHRDL2Q6WN34 429 aa12.23□□□□□ -0.45
PSEN1-214ENST00000555867 ZBTB12Q9Y330 459 aaPredicted RBP12.23□□□□□ -0.45
PSEN1-214ENST00000555867 ATF5Q9Y2D1 282 aaPredicted RBP12.22□□□□□ -0.45
PSEN1-214ENST00000555867 AKT1S1Q96B36 256 aa12.15□□□□□ -0.46
PSEN1-214ENST00000555867 NESP48681 1621 aa12.15□□□□□ -0.47
PSEN1-214ENST00000555867 NCAPD3P42695 1498 aa12.12□□□□□ -0.47
PSEN1-214ENST00000555867 THOC2Q8NI27 1593 aaKnown RBP12.05□□□□□ -0.48
PSEN1-214ENST00000555867 ZBTB22O15209 634 aa12.04□□□□□ -0.48
PSEN1-214ENST00000555867 OSCARQ8IYS5 282 aa12.04□□□□□ -0.48
PSEN1-214ENST00000555867 ATAD2BQ9ULI0 1458 aa12.02□□□□□ -0.48
PSEN1-214ENST00000555867 ATXN8OSP0DMR3 200 aa12□□□□□ -0.49
PSEN1-214ENST00000555867 REM2Q8IYK8 340 aaPredicted RBP12□□□□□ -0.49
PSEN1-214ENST00000555867 SMARCA2P51531 1590 aa11.95□□□□□ -0.5
PSEN1-214ENST00000555867 HMGXB3Q12766 1538 aa11.93□□□□□ -0.5
PSEN1-214ENST00000555867 KIF21AQ7Z4S6 1674 aa11.91□□□□□ -0.5
PSEN1-214ENST00000555867 PIP4P2Q8N4L2 257 aa11.89□□□□□ -0.51
PSEN1-214ENST00000555867 PITPNM1O00562 1244 aa11.87□□□□□ -0.51
PSEN1-214ENST00000555867 LAMC3Q9Y6N6 1575 aa11.87□□□□□ -0.51
PSEN1-214ENST00000555867 SP7Q8TDD2 431 aaPredicted RBP11.86□□□□□ -0.51
PSEN1-214ENST00000555867 FBLN2P98095 1184 aa11.84□□□□□ -0.51
PSEN1-214ENST00000555867 SMARCA4P51532 1647 aa11.84□□□□□ -0.51
PSEN1-214ENST00000555867 PDS5BQ9NTI5 1447 aa11.84□□□□□ -0.51
PSEN1-214ENST00000555867 BAZ1BQ9UIG0 1483 aaKnown RBP11.83□□□□□ -0.52
PSEN1-214ENST00000555867 BAZ1AQ9NRL2 1556 aaPredicted RBP11.82□□□□□ -0.52
PSEN1-214ENST00000555867 SPDYE2BA6NHP3 402 aa11.81□□□□□ -0.52
PSEN1-214ENST00000555867 SPDYE6P0CI01 402 aa11.81□□□□□ -0.52
PSEN1-214ENST00000555867 FXR2P51116 673 aaKnown RBP eCLIP11.81□□□□□ -0.52
PSEN1-214ENST00000555867 SPDYE2Q495Y8 402 aa11.81□□□□□ -0.52
PSEN1-214ENST00000555867 MRC2Q9UBG0 1479 aa11.78□□□□□ -0.52
PSEN1-214ENST00000555867 WDR62O43379 1518 aa11.76□□□□□ -0.53
PSEN1-214ENST00000555867 RIMBP3CA6NJZ7 1639 aa11.74□□□□□ -0.53
PSEN1-214ENST00000555867 RIMBP3BA6NNM3 1639 aa11.74□□□□□ -0.53
PSEN1-214ENST00000555867 RIMBP3Q9UFD9 1639 aa11.74□□□□□ -0.53
PSEN1-214ENST00000555867 HAX1O00165 279 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms