RNA–Protein interactions for RNA: ENST00000555503.1

GPHN-208, Transcript of gephyrin, humanhuman

TSL 3

Gene GPHN, Length 655 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPHN-208ENST00000555503 CHIC1Q5VXU3 224 aa20.47■□□□□ 0.87
GPHN-208ENST00000555503 AEBP2Q6ZN18 517 aaPredicted RBP20.08■□□□□ 0.81
GPHN-208ENST00000555503 PHF23Q9BUL5 403 aaPredicted RBP18.11■□□□□ 0.49
GPHN-208ENST00000555503 NISCHQ9Y2I1 1504 aa17.5■□□□□ 0.39
GPHN-208ENST00000555503 PLPPR3Q6T4P5 718 aa17■□□□□ 0.31
GPHN-208ENST00000555503 SENP3Q9H4L4 574 aaPredicted RBP16.88■□□□□ 0.29
GPHN-208ENST00000555503 ADRA2BP18089 450 aa15.88■□□□□ 0.13
GPHN-208ENST00000555503 ABCC9O60706 1549 aa15.86■□□□□ 0.13
GPHN-208ENST00000555503 CCDC180Q9P1Z9 1646 aa15.86■□□□□ 0.13
GPHN-208ENST00000555503 KCNA4P22459 653 aa15.74■□□□□ 0.11
GPHN-208ENST00000555503 EHMT2Q96KQ7 1210 aa15.69■□□□□ 0.1
GPHN-208ENST00000555503 PPP6R1Q9UPN7 881 aa15.66■□□□□ 0.1
GPHN-208ENST00000555503 FOXD1Q16676 465 aa15.56■□□□□ 0.08
GPHN-208ENST00000555503 CSRNP3Q8WYN3 585 aa15.15■□□□□ 0.02
GPHN-208ENST00000555503 SLC4A1APQ9BWU0 796 aaKnown RBP15.14■□□□□ 0.01
GPHN-208ENST00000555503 PPP4R3CPQ6ZMV5 832 aa15.09■□□□□ 0.01
GPHN-208ENST00000555503 RB1CC1Q8TDY2 1594 aa15.07■□□□□ 0
GPHN-208ENST00000555503 UNC13AQ9UPW8 1703 aa14.97□□□□□ -0.01
GPHN-208ENST00000555503 NCBP3Q53F19 620 aaKnown RBP14.93□□□□□ -0.02
GPHN-208ENST00000555503 NACADO15069 1562 aa14.9□□□□□ -0.02
GPHN-208ENST00000555503 PIAS4Q8N2W9 510 aaPredicted RBP14.87□□□□□ -0.03
GPHN-208ENST00000555503 DNAJC5BQ9UF47 199 aa14.86□□□□□ -0.03
GPHN-208ENST00000555503 DCAF8L2P0C7V8 631 aa14.8□□□□□ -0.04
GPHN-208ENST00000555503 POTEDQ86YR6 584 aa14.78□□□□□ -0.04
GPHN-208ENST00000555503 NPM3O75607 178 aaKnown RBP14.74□□□□□ -0.05
GPHN-208ENST00000555503 PABPN1Q86U42 306 aaKnown RBP eCLIP14.7□□□□□ -0.06
GPHN-208ENST00000555503 BICRAQ9NZM4 1560 aa14.66□□□□□ -0.06
GPHN-208ENST00000555503 MYO15BQ96JP2 1530 aa14.58□□□□□ -0.08
GPHN-208ENST00000555503 ZBTB22O15209 634 aa14.53□□□□□ -0.08
GPHN-208ENST00000555503 ZCCHC6Q5VYS8 1495 aaKnown RBP14.5□□□□□ -0.09
GPHN-208ENST00000555503 SCRIBQ14160 1630 aa14.48□□□□□ -0.09
GPHN-208ENST00000555503 CNKSR2Q8WXI2 1034 aa14.47□□□□□ -0.09
GPHN-208ENST00000555503 DCAF1Q9Y4B6 1507 aa14.41□□□□□ -0.1
GPHN-208ENST00000555503 CC2D2AQ9P2K1 1620 aa14.37□□□□□ -0.11
GPHN-208ENST00000555503 SCAF1Q9H7N4 1312 aaKnown RBP14.33□□□□□ -0.12
GPHN-208ENST00000555503 SHROOM4Q9ULL8 1493 aa14.31□□□□□ -0.12
GPHN-208ENST00000555503 EIF4G1Q04637 1599 aaKnown RBP14.29□□□□□ -0.12
GPHN-208ENST00000555503 CECR2Q9BXF3 1484 aa14.25□□□□□ -0.13
GPHN-208ENST00000555503 FOXD4L1Q9NU39 408 aa14.24□□□□□ -0.13
GPHN-208ENST00000555503 SLC24A1O60721 1099 aa14.06□□□□□ -0.16
GPHN-208ENST00000555503 MSH5O43196 834 aa14□□□□□ -0.17
GPHN-208ENST00000555503 RNF216Q9NWF9 866 aaPredicted RBP13.99□□□□□ -0.17
GPHN-208ENST00000555503 AMER1Q5JTC6 1135 aaPredicted RBP13.98□□□□□ -0.17
GPHN-208ENST00000555503 RTN4Q9NQC3 1192 aaKnown RBP13.97□□□□□ -0.17
GPHN-208ENST00000555503 MAPK8IP2Q13387 824 aaPredicted RBP13.96□□□□□ -0.17
GPHN-208ENST00000555503 SMARCA4P51532 1647 aa13.75□□□□□ -0.21
GPHN-208ENST00000555503 SLC4A2P04920 1241 aa13.71□□□□□ -0.21
GPHN-208ENST00000555503 HOXD11P31277 338 aaPredicted RBP13.71□□□□□ -0.21
GPHN-208ENST00000555503 ATXN8OSP0DMR3 200 aa13.69□□□□□ -0.22
GPHN-208ENST00000555503 NCAPD3P42695 1498 aa13.68□□□□□ -0.22
GPHN-208ENST00000555503 ERCC6Q03468 1493 aa13.68□□□□□ -0.22
GPHN-208ENST00000555503 ATAD2BQ9ULI0 1458 aa13.67□□□□□ -0.22
GPHN-208ENST00000555503 SMARCA2P51531 1590 aa13.67□□□□□ -0.22
GPHN-208ENST00000555503 HMGXB3Q12766 1538 aa13.66□□□□□ -0.22
GPHN-208ENST00000555503 DNAJC5Q9H3Z4 198 aa13.65□□□□□ -0.22
GPHN-208ENST00000555503 DMRT2Q9Y5R5 561 aa13.64□□□□□ -0.23
GPHN-208ENST00000555503 CUX2O14529 1486 aa13.63□□□□□ -0.23
GPHN-208ENST00000555503 NESP48681 1621 aa13.63□□□□□ -0.23
GPHN-208ENST00000555503 FKBP8Q14318 412 aa13.61□□□□□ -0.23
GPHN-208ENST00000555503 BAZ1AQ9NRL2 1556 aaPredicted RBP13.61□□□□□ -0.23
GPHN-208ENST00000555503 MYCNP04198 464 aaPredicted RBP13.6□□□□□ -0.23
GPHN-208ENST00000555503 KIF21AQ7Z4S6 1674 aa13.59□□□□□ -0.23
GPHN-208ENST00000555503 BAZ1BQ9UIG0 1483 aaKnown RBP13.58□□□□□ -0.24
GPHN-208ENST00000555503 THOC2Q8NI27 1593 aaKnown RBP13.55□□□□□ -0.24
GPHN-208ENST00000555503 PEG3Q9GZU2 1588 aa13.54□□□□□ -0.24
GPHN-208ENST00000555503 MROH2BQ7Z745 1585 aa13.53□□□□□ -0.24
GPHN-208ENST00000555503 LAMC3Q9Y6N6 1575 aa13.49□□□□□ -0.25
GPHN-208ENST00000555503 WIZO95785 1651 aa13.47□□□□□ -0.25
GPHN-208ENST00000555503 PDS5BQ9NTI5 1447 aa13.32□□□□□ -0.28
GPHN-208ENST00000555503 PRDM2Q13029 1718 aa13.29□□□□□ -0.28
GPHN-208ENST00000555503 MRC2Q9UBG0 1479 aa13.28□□□□□ -0.28
GPHN-208ENST00000555503 WDR62O43379 1518 aa13.27□□□□□ -0.29
GPHN-208ENST00000555503 CADPSQ9ULU8 1353 aa13.26□□□□□ -0.29
GPHN-208ENST00000555503 CEP164Q9UPV0 1460 aa13.22□□□□□ -0.29
GPHN-208ENST00000555503 TOP2AP11388 1531 aaKnown RBP13.18□□□□□ -0.3
GPHN-208ENST00000555503 FANCD2Q9BXW9 1451 aa13.18□□□□□ -0.3
GPHN-208ENST00000555503 ATF5Q9Y2D1 282 aaPredicted RBP13.17□□□□□ -0.3
GPHN-208ENST00000555503 RSF1Q96T23 1441 aaPredicted RBP13.14□□□□□ -0.31
GPHN-208ENST00000555503 CFTRP13569 1480 aa13.12□□□□□ -0.31
GPHN-208ENST00000555503 TRIM41Q8WV44 630 aa13.12□□□□□ -0.31
GPHN-208ENST00000555503 URB2Q14146 1524 aaKnown RBP13.11□□□□□ -0.31
GPHN-208ENST00000555503 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.05□□□□□ -0.32
GPHN-208ENST00000555503 HNRNPUL2Q1KMD3 747 aaKnown RBP13.05□□□□□ -0.32
GPHN-208ENST00000555503 SAMD1Q6SPF0 538 aaPredicted RBP13.05□□□□□ -0.32
GPHN-208ENST00000555503 CCDC88BA6NC98 1476 aa13□□□□□ -0.33
GPHN-208ENST00000555503 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13□□□□□ -0.33
GPHN-208ENST00000555503 CHD1O14646 1710 aa12.99□□□□□ -0.33
GPHN-208ENST00000555503 RIMBP3CA6NJZ7 1639 aa12.98□□□□□ -0.33
GPHN-208ENST00000555503 RIMBP3BA6NNM3 1639 aa12.98□□□□□ -0.33
GPHN-208ENST00000555503 RIMBP3Q9UFD9 1639 aa12.98□□□□□ -0.33
GPHN-208ENST00000555503 EIF4G3O43432 1585 aaKnown RBP12.97□□□□□ -0.33
GPHN-208ENST00000555503 ZNF608Q9ULD9 1512 aaPredicted RBP12.96□□□□□ -0.33
GPHN-208ENST00000555503 TOPBP1Q92547 1522 aa12.94□□□□□ -0.34
GPHN-208ENST00000555503 OSCARQ8IYS5 282 aa12.94□□□□□ -0.34
GPHN-208ENST00000555503 U3KPZ7 1027 aaPredicted RBP12.94□□□□□ -0.34
GPHN-208ENST00000555503 DNMBPQ6XZF7 1577 aa12.92□□□□□ -0.34
GPHN-208ENST00000555503 IFT140Q96RY7 1462 aa12.91□□□□□ -0.34
GPHN-208ENST00000555503 DCAF8L1A6NGE4 600 aa12.9□□□□□ -0.34
GPHN-208ENST00000555503 TARBP1Q13395 1621 aaKnown RBP12.9□□□□□ -0.34
GPHN-208ENST00000555503 FBXO3Q9UK99 471 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 52.4 ms