RNA–Protein interactions for RNA: ENST00000555232.5

ARHGEF40-206, Transcript of Rho guanine nucleotide exchange factor 40, humanhuman

TSL 2

Gene ARHGEF40, Length 3,902 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ARHGEF40-206ENST00000555232 NISCHQ9Y2I1 1504 aa23.48■■□□□ 1.35
ARHGEF40-206ENST00000555232 DCAF8L2P0C7V8 631 aa22.66■■□□□ 1.22
ARHGEF40-206ENST00000555232 SHROOM4Q9ULL8 1493 aa21.92■■□□□ 1.1
ARHGEF40-206ENST00000555232 SUPT5HO00267 1087 aaKnown RBP21.67■■□□□ 1.06
ARHGEF40-206ENST00000555232 EHMT2Q96KQ7 1210 aa20.88■□□□□ 0.93
ARHGEF40-206ENST00000555232 FAM9AQ8IZU1 332 aaPredicted RBP20.38■□□□□ 0.85
ARHGEF40-206ENST00000555232 ABCC9O60706 1549 aa20.12■□□□□ 0.81
ARHGEF40-206ENST00000555232 TTBK1Q5TCY1 1321 aaPredicted RBP19.99■□□□□ 0.79
ARHGEF40-206ENST00000555232 PABPN1Q86U42 306 aaKnown RBP eCLIP19.84■□□□□ 0.77
ARHGEF40-206ENST00000555232 LOC105371045A0A1W2PR82 267 aa19.83■□□□□ 0.77
ARHGEF40-206ENST00000555232 RANGAP1P46060 587 aaPredicted RBP19.83■□□□□ 0.76
ARHGEF40-206ENST00000555232 PCGF6Q9BYE7 350 aa19.82■□□□□ 0.76
ARHGEF40-206ENST00000555232 TRIM41Q8WV44 630 aa19.81■□□□□ 0.76
ARHGEF40-206ENST00000555232 CHIC1Q5VXU3 224 aa19.77■□□□□ 0.76
ARHGEF40-206ENST00000555232 PPARGC1BQ86YN6 1023 aaKnown RBP19.75■□□□□ 0.75
ARHGEF40-206ENST00000555232 ZCCHC6Q5VYS8 1495 aaKnown RBP19.53■□□□□ 0.72
ARHGEF40-206ENST00000555232 SCRIBQ14160 1630 aa19.34■□□□□ 0.69
ARHGEF40-206ENST00000555232 UBTFP17480 764 aaKnown RBP19.33■□□□□ 0.69
ARHGEF40-206ENST00000555232 CCDC180Q9P1Z9 1646 aa19.2■□□□□ 0.66
ARHGEF40-206ENST00000555232 ATP1B4Q9UN42 357 aaPredicted RBP19.12■□□□□ 0.65
ARHGEF40-206ENST00000555232 HRCP23327 699 aa19.1■□□□□ 0.65
ARHGEF40-206ENST00000555232 APLP2Q06481 763 aa19.06■□□□□ 0.64
ARHGEF40-206ENST00000555232 MYO15BQ96JP2 1530 aa18.93■□□□□ 0.62
ARHGEF40-206ENST00000555232 CCER1Q8TC90 406 aaPredicted RBP18.89■□□□□ 0.61
ARHGEF40-206ENST00000555232 PELP1Q8IZL8 1130 aaKnown RBP18.88■□□□□ 0.61
ARHGEF40-206ENST00000555232 CECR2Q9BXF3 1484 aa18.84■□□□□ 0.61
ARHGEF40-206ENST00000555232 RSF1Q96T23 1441 aaPredicted RBP18.82■□□□□ 0.6
ARHGEF40-206ENST00000555232 TRIM26Q12899 539 aaPredicted RBP18.81■□□□□ 0.6
ARHGEF40-206ENST00000555232 ITGAEP38570 1179 aa18.81■□□□□ 0.6
ARHGEF40-206ENST00000555232 HNRNPUL2Q1KMD3 747 aaKnown RBP18.76■□□□□ 0.59
ARHGEF40-206ENST00000555232 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP18.74■□□□□ 0.59
ARHGEF40-206ENST00000555232 P3H3Q8IVL6 736 aa18.55■□□□□ 0.56
ARHGEF40-206ENST00000555232 CSRNP3Q8WYN3 585 aa18.51■□□□□ 0.55
ARHGEF40-206ENST00000555232 RB1CC1Q8TDY2 1594 aa18.5■□□□□ 0.55
ARHGEF40-206ENST00000555232 MROH2BQ7Z745 1585 aa18.48■□□□□ 0.55
ARHGEF40-206ENST00000555232 ARID3CA6NKF2 412 aa18.47■□□□□ 0.55
ARHGEF40-206ENST00000555232 NACADO15069 1562 aa18.45■□□□□ 0.54
ARHGEF40-206ENST00000555232 DCAF1Q9Y4B6 1507 aa18.42■□□□□ 0.54
ARHGEF40-206ENST00000555232 YTHDC1Q96MU7 727 aaKnown RBP18.39■□□□□ 0.53
ARHGEF40-206ENST00000555232 SCAF1Q9H7N4 1312 aaKnown RBP18.35■□□□□ 0.53
ARHGEF40-206ENST00000555232 FBLN2P98095 1184 aa18.32■□□□□ 0.52
ARHGEF40-206ENST00000555232 ZEB1P37275 1124 aaPredicted RBP18.28■□□□□ 0.52
ARHGEF40-206ENST00000555232 WIZO95785 1651 aa18.24■□□□□ 0.51
ARHGEF40-206ENST00000555232 FAM50AQ14320 339 aaKnown RBP18.23■□□□□ 0.51
ARHGEF40-206ENST00000555232 MYT1Q01538 1121 aa18.19■□□□□ 0.5
ARHGEF40-206ENST00000555232 ABCC8Q09428 1581 aa18.19■□□□□ 0.5
ARHGEF40-206ENST00000555232 SOGA1O94964 1423 aa18.18■□□□□ 0.5
ARHGEF40-206ENST00000555232 CNGB1Q14028 1251 aaPredicted RBP18.17■□□□□ 0.5
ARHGEF40-206ENST00000555232 CCDC88BA6NC98 1476 aa18.13■□□□□ 0.49
ARHGEF40-206ENST00000555232 BAZ1AQ9NRL2 1556 aaPredicted RBP18.13■□□□□ 0.49
ARHGEF40-206ENST00000555232 BAZ1BQ9UIG0 1483 aaKnown RBP18.12■□□□□ 0.49
ARHGEF40-206ENST00000555232 NEUROD1Q13562 356 aa18.06■□□□□ 0.48
ARHGEF40-206ENST00000555232 WRNQ14191 1432 aaPredicted RBP eCLIP18.06■□□□□ 0.48
ARHGEF40-206ENST00000555232 RUSC2Q8N2Y8 1516 aa17.96■□□□□ 0.47
ARHGEF40-206ENST00000555232 POLR3GLQ9BT43 218 aa17.95■□□□□ 0.46
ARHGEF40-206ENST00000555232 CEP162Q5TB80 1403 aa17.94■□□□□ 0.46
ARHGEF40-206ENST00000555232 DIEXFQ68CQ4 756 aaKnown RBP17.92■□□□□ 0.46
ARHGEF40-206ENST00000555232 MYT1LQ9UL68 1186 aa17.91■□□□□ 0.46
ARHGEF40-206ENST00000555232 CLIP1P30622 1438 aa17.88■□□□□ 0.45
ARHGEF40-206ENST00000555232 TRIM52Q96A61 297 aa17.86■□□□□ 0.45
ARHGEF40-206ENST00000555232 GTF3C3Q9Y5Q9 886 aa17.85■□□□□ 0.45
ARHGEF40-206ENST00000555232 DNAJC5BQ9UF47 199 aa17.84■□□□□ 0.45
ARHGEF40-206ENST00000555232 ZNF777Q9ULD5 760 aaPredicted RBP17.83■□□□□ 0.44
ARHGEF40-206ENST00000555232 CHIC2Q9UKJ5 165 aa17.82■□□□□ 0.44
ARHGEF40-206ENST00000555232 ATAD2BQ9ULI0 1458 aa17.8■□□□□ 0.44
ARHGEF40-206ENST00000555232 SMARCA4P51532 1647 aa17.79■□□□□ 0.44
ARHGEF40-206ENST00000555232 ACIN1Q9UKV3 1341 aaKnown RBP17.78■□□□□ 0.44
ARHGEF40-206ENST00000555232 CENPBP07199 599 aaPredicted RBP17.78■□□□□ 0.44
ARHGEF40-206ENST00000555232 HIRIP3Q9BW71 556 aaPredicted RBP17.76■□□□□ 0.43
ARHGEF40-206ENST00000555232 ZNF326Q5BKZ1 582 aaKnown RBP17.74■□□□□ 0.43
ARHGEF40-206ENST00000555232 TOP2AP11388 1531 aaKnown RBP17.73■□□□□ 0.43
ARHGEF40-206ENST00000555232 KANK4Q5T7N3 995 aaPredicted RBP17.72■□□□□ 0.43
ARHGEF40-206ENST00000555232 GOLGA3Q08378 1498 aa17.71■□□□□ 0.43
ARHGEF40-206ENST00000555232 TNIKQ9UKE5 1360 aa17.69■□□□□ 0.42
ARHGEF40-206ENST00000555232 TDRD9Q8NDG6 1382 aaKnown RBP17.68■□□□□ 0.42
ARHGEF40-206ENST00000555232 CUX2O14529 1486 aa17.66■□□□□ 0.42
ARHGEF40-206ENST00000555232 KIF27Q86VH2 1401 aa17.63■□□□□ 0.41
ARHGEF40-206ENST00000555232 CHMP7Q8WUX9 453 aaPredicted RBP17.63■□□□□ 0.41
ARHGEF40-206ENST00000555232 ZNF316A6NFI3 1004 aaPredicted RBP17.61■□□□□ 0.41
ARHGEF40-206ENST00000555232 SMARCA2P51531 1590 aa17.61■□□□□ 0.41
ARHGEF40-206ENST00000555232 RAPGEF2Q9Y4G8 1499 aa17.59■□□□□ 0.41
ARHGEF40-206ENST00000555232 RRP7BPQ9NSQ0 103 aa17.58■□□□□ 0.41
ARHGEF40-206ENST00000555232 CEP164Q9UPV0 1460 aa17.58■□□□□ 0.4
ARHGEF40-206ENST00000555232 CARMIL1Q5VZK9 1371 aa17.55■□□□□ 0.4
ARHGEF40-206ENST00000555232 EEA1Q15075 1411 aa17.54■□□□□ 0.4
ARHGEF40-206ENST00000555232 MTUS2Q5JR59 1369 aa17.51■□□□□ 0.39
ARHGEF40-206ENST00000555232 CADPSQ9ULU8 1353 aa17.51■□□□□ 0.39
ARHGEF40-206ENST00000555232 SENP3Q9H4L4 574 aaPredicted RBP17.5■□□□□ 0.39
ARHGEF40-206ENST00000555232 SIN3AQ96ST3 1273 aa17.49■□□□□ 0.39
ARHGEF40-206ENST00000555232 BICRAQ9NZM4 1560 aa17.48■□□□□ 0.39
ARHGEF40-206ENST00000555232 KCNH8Q96L42 1107 aa17.47■□□□□ 0.39
ARHGEF40-206ENST00000555232 DDX10Q13206 875 aaKnown RBP17.45■□□□□ 0.38
ARHGEF40-206ENST00000555232 NESP48681 1621 aa17.43■□□□□ 0.38
ARHGEF40-206ENST00000555232 SENP3-EIF4A1A0A087X0R7 540 aa17.43■□□□□ 0.38
ARHGEF40-206ENST00000555232 MIER1Q8N108 512 aa17.43■□□□□ 0.38
ARHGEF40-206ENST00000555232 EIF4G1Q04637 1599 aaKnown RBP17.43■□□□□ 0.38
ARHGEF40-206ENST00000555232 BCANQ96GW7 911 aa17.42■□□□□ 0.38
ARHGEF40-206ENST00000555232 ERCC6Q03468 1493 aa17.41■□□□□ 0.38
ARHGEF40-206ENST00000555232 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.41■□□□□ 0.381e-6■■□□□ 13.1
ARHGEF40-206ENST00000555232 RAD54L2Q9Y4B4 1467 aa17.39■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms