RNA–Protein interactions for RNA: ENST00000545358.5

NPIPB3-214, Transcript of nuclear pore complex interacting protein family member B3, humanhuman

TSL 5

Gene NPIPB3, Length 581 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB3-214ENST00000545358 AEBP2Q6ZN18 517 aaPredicted RBP15.71■□□□□ 0.11
NPIPB3-214ENST00000545358 CHIC1Q5VXU3 224 aa15.28■□□□□ 0.04
NPIPB3-214ENST00000545358 SENP3Q9H4L4 574 aaPredicted RBP13.51□□□□□ -0.25
NPIPB3-214ENST00000545358 PHF23Q9BUL5 403 aaPredicted RBP13.33□□□□□ -0.28
NPIPB3-214ENST00000545358 FOXD1Q16676 465 aa12.45□□□□□ -0.42
NPIPB3-214ENST00000545358 PLPPR3Q6T4P5 718 aa12.39□□□□□ -0.43
NPIPB3-214ENST00000545358 NISCHQ9Y2I1 1504 aa12.33□□□□□ -0.44
NPIPB3-214ENST00000545358 ADRA2BP18089 450 aa11.8□□□□□ -0.52
NPIPB3-214ENST00000545358 PPP6R1Q9UPN7 881 aa11.8□□□□□ -0.52
NPIPB3-214ENST00000545358 PIAS4Q8N2W9 510 aaPredicted RBP11.75□□□□□ -0.53
NPIPB3-214ENST00000545358 MSH5O43196 834 aa11.67□□□□□ -0.54
NPIPB3-214ENST00000545358 SCAF1Q9H7N4 1312 aaKnown RBP10.97□□□□□ -0.65
NPIPB3-214ENST00000545358 POTEDQ86YR6 584 aa10.88□□□□□ -0.67
NPIPB3-214ENST00000545358 PPP4R3CPQ6ZMV5 832 aa10.84□□□□□ -0.67
NPIPB3-214ENST00000545358 CCDC180Q9P1Z9 1646 aa10.81□□□□□ -0.68
NPIPB3-214ENST00000545358 DMRT2Q9Y5R5 561 aa10.73□□□□□ -0.69
NPIPB3-214ENST00000545358 MAPK8IP2Q13387 824 aaPredicted RBP10.71□□□□□ -0.69
NPIPB3-214ENST00000545358 CNKSR2Q8WXI2 1034 aa10.62□□□□□ -0.71
NPIPB3-214ENST00000545358 NCBP3Q53F19 620 aaKnown RBP10.6□□□□□ -0.71
NPIPB3-214ENST00000545358 RNF216Q9NWF9 866 aaPredicted RBP10.45□□□□□ -0.74
NPIPB3-214ENST00000545358 HOXD11P31277 338 aaPredicted RBP10.44□□□□□ -0.74
NPIPB3-214ENST00000545358 ZCCHC6Q5VYS8 1495 aaKnown RBP10.41□□□□□ -0.74
NPIPB3-214ENST00000545358 KCNA4P22459 653 aa10.35□□□□□ -0.75
NPIPB3-214ENST00000545358 NPM3O75607 178 aaKnown RBP10.33□□□□□ -0.76
NPIPB3-214ENST00000545358 DCAF1Q9Y4B6 1507 aa10.27□□□□□ -0.77
NPIPB3-214ENST00000545358 DCAF8L1A6NGE4 600 aa10.22□□□□□ -0.77
NPIPB3-214ENST00000545358 DNAJC5BQ9UF47 199 aa10.18□□□□□ -0.78
NPIPB3-214ENST00000545358 MYO15BQ96JP2 1530 aa10.13□□□□□ -0.79
NPIPB3-214ENST00000545358 ABCC9O60706 1549 aa10.03□□□□□ -0.8
NPIPB3-214ENST00000545358 NACADO15069 1562 aa10.02□□□□□ -0.81
NPIPB3-214ENST00000545358 DCAF8L2P0C7V8 631 aa9.98□□□□□ -0.81
NPIPB3-214ENST00000545358 SHROOM4Q9ULL8 1493 aa9.98□□□□□ -0.81
NPIPB3-214ENST00000545358 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.94□□□□□ -0.82
NPIPB3-214ENST00000545358 RNF39Q9H2S5 420 aa9.93□□□□□ -0.82
NPIPB3-214ENST00000545358 RB1CC1Q8TDY2 1594 aa9.91□□□□□ -0.82
NPIPB3-214ENST00000545358 SLC4A1APQ9BWU0 796 aaKnown RBP9.88□□□□□ -0.83
NPIPB3-214ENST00000545358 SCRIBQ14160 1630 aa9.86□□□□□ -0.83
NPIPB3-214ENST00000545358 C1QBPQ07021 282 aaKnown RBP9.86□□□□□ -0.83
NPIPB3-214ENST00000545358 CACNB1Q02641 598 aaPredicted RBP9.78□□□□□ -0.84
NPIPB3-214ENST00000545358 SLC4A2P04920 1241 aa9.77□□□□□ -0.85
NPIPB3-214ENST00000545358 U3KPZ7 1027 aaPredicted RBP9.72□□□□□ -0.85
NPIPB3-214ENST00000545358 UNC13AQ9UPW8 1703 aa9.7□□□□□ -0.86
NPIPB3-214ENST00000545358 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP9.69□□□□□ -0.86
NPIPB3-214ENST00000545358 HNRNPUL2Q1KMD3 747 aaKnown RBP9.69□□□□□ -0.86
NPIPB3-214ENST00000545358 APLP2Q06481 763 aa9.67□□□□□ -0.86
NPIPB3-214ENST00000545358 FOXD4L1Q9NU39 408 aa9.65□□□□□ -0.86
NPIPB3-214ENST00000545358 MYCNP04198 464 aaPredicted RBP9.63□□□□□ -0.87
NPIPB3-214ENST00000545358 SAMD1Q6SPF0 538 aaPredicted RBP9.61□□□□□ -0.87
NPIPB3-214ENST00000545358 SUPT5HO00267 1087 aaKnown RBP9.59□□□□□ -0.87
NPIPB3-214ENST00000545358 BICRAQ9NZM4 1560 aa9.58□□□□□ -0.88
NPIPB3-214ENST00000545358 RSF1Q96T23 1441 aaPredicted RBP9.55□□□□□ -0.88
NPIPB3-214ENST00000545358 BAZ1AQ9NRL2 1556 aaPredicted RBP9.54□□□□□ -0.88
NPIPB3-214ENST00000545358 CECR2Q9BXF3 1484 aa9.52□□□□□ -0.89
NPIPB3-214ENST00000545358 MROH2BQ7Z745 1585 aa9.5□□□□□ -0.89
NPIPB3-214ENST00000545358 CAPN15O75808 1086 aa9.49□□□□□ -0.89
NPIPB3-214ENST00000545358 SMARCA4P51532 1647 aa9.49□□□□□ -0.89
NPIPB3-214ENST00000545358 ZBTB22O15209 634 aa9.48□□□□□ -0.89
NPIPB3-214ENST00000545358 ZNF219Q9P2Y4 722 aaPredicted RBP9.48□□□□□ -0.89
NPIPB3-214ENST00000545358 SPINK5Q9NQ38 1064 aaPredicted RBP9.46□□□□□ -0.9
NPIPB3-214ENST00000545358 WIZO95785 1651 aa9.43□□□□□ -0.9
NPIPB3-214ENST00000545358 PEG3Q9GZU2 1588 aa9.41□□□□□ -0.9
NPIPB3-214ENST00000545358 ATXN8OSP0DMR3 200 aa9.4□□□□□ -0.9
NPIPB3-214ENST00000545358 PABPN1Q86U42 306 aaKnown RBP eCLIP9.4□□□□□ -0.9
NPIPB3-214ENST00000545358 TOP2AP11388 1531 aaKnown RBP9.39□□□□□ -0.91
NPIPB3-214ENST00000545358 TRHP20396 242 aaPredicted RBP9.38□□□□□ -0.91
NPIPB3-214ENST00000545358 DSG3P32926 999 aa9.37□□□□□ -0.91
NPIPB3-214ENST00000545358 SMARCA2P51531 1590 aa9.33□□□□□ -0.92
NPIPB3-214ENST00000545358 EHMT2Q96KQ7 1210 aa9.33□□□□□ -0.92
NPIPB3-214ENST00000545358 CSRNP3Q8WYN3 585 aa9.32□□□□□ -0.92
NPIPB3-214ENST00000545358 EIF4G1Q04637 1599 aaKnown RBP9.29□□□□□ -0.92
NPIPB3-214ENST00000545358 ATAD2BQ9ULI0 1458 aa9.29□□□□□ -0.92
NPIPB3-214ENST00000545358 HMGXB3Q12766 1538 aa9.26□□□□□ -0.93
NPIPB3-214ENST00000545358 BAZ1BQ9UIG0 1483 aaKnown RBP9.25□□□□□ -0.93
NPIPB3-214ENST00000545358 ABCB7O75027 752 aa9.24□□□□□ -0.93
NPIPB3-214ENST00000545358 ATF5Q9Y2D1 282 aaPredicted RBP9.23□□□□□ -0.93
NPIPB3-214ENST00000545358 CCDC88BA6NC98 1476 aa9.22□□□□□ -0.93
NPIPB3-214ENST00000545358 POLA2Q14181 598 aa9.21□□□□□ -0.94
NPIPB3-214ENST00000545358 NCAPD3P42695 1498 aa9.21□□□□□ -0.94
NPIPB3-214ENST00000545358 ZBTB12Q9Y330 459 aaPredicted RBP9.18□□□□□ -0.94
NPIPB3-214ENST00000545358 CC2D2AQ9P2K1 1620 aa9.13□□□□□ -0.95
NPIPB3-214ENST00000545358 PRDM2Q13029 1718 aa9.06□□□□□ -0.96
NPIPB3-214ENST00000545358 TRIM41Q8WV44 630 aa9.05□□□□□ -0.96
NPIPB3-214ENST00000545358 RBM42Q9BTD8 480 aaKnown RBP9.05□□□□□ -0.96
NPIPB3-214ENST00000545358 ABCC8Q09428 1581 aa9.04□□□□□ -0.96
NPIPB3-214ENST00000545358 FBLN2P98095 1184 aa9.02□□□□□ -0.97
NPIPB3-214ENST00000545358 CFTRP13569 1480 aa9.02□□□□□ -0.97
NPIPB3-214ENST00000545358 WRNQ14191 1432 aaPredicted RBP eCLIP9.01□□□□□ -0.97
NPIPB3-214ENST00000545358 SYNJ1O43426 1573 aa8.98□□□□□ -0.97
NPIPB3-214ENST00000545358 BIVM-ERCC5R4GMW8 1640 aa8.98□□□□□ -0.97
NPIPB3-214ENST00000545358 TOP2BQ02880 1626 aa8.97□□□□□ -0.97
NPIPB3-214ENST00000545358 EEA1Q15075 1411 aa8.96□□□□□ -0.98
NPIPB3-214ENST00000545358 CADPSQ9ULU8 1353 aa8.95□□□□□ -0.98
NPIPB3-214ENST00000545358 LAMC3Q9Y6N6 1575 aa8.93□□□□□ -0.98
NPIPB3-214ENST00000545358 CUX1P39880 1505 aa8.9□□□□□ -0.99
NPIPB3-214ENST00000545358 OSCARQ8IYS5 282 aa8.89□□□□□ -0.99
NPIPB3-214ENST00000545358 FANCD2Q9BXW9 1451 aa8.87□□□□□ -0.99
NPIPB3-214ENST00000545358 SPDYE2BA6NHP3 402 aa8.86□□□□□ -0.99
NPIPB3-214ENST00000545358 SPDYE6P0CI01 402 aa8.86□□□□□ -0.99
NPIPB3-214ENST00000545358 MKRN4PQ13434 485 aaPredicted RBP8.86□□□□□ -0.99
NPIPB3-214ENST00000545358 SPDYE2Q495Y8 402 aa8.86□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms