RNA–Protein interactions for RNA: ENST00000544990.5

CPSF7-224, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 3

Gene CPSF7, Length 646 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-224ENST00000544990 CHIC1Q5VXU3 224 aa20.32■□□□□ 0.84
CPSF7-224ENST00000544990 AEBP2Q6ZN18 517 aaPredicted RBP20.31■□□□□ 0.84
CPSF7-224ENST00000544990 NISCHQ9Y2I1 1504 aa17.86■□□□□ 0.45
CPSF7-224ENST00000544990 PHF23Q9BUL5 403 aaPredicted RBP17.83■□□□□ 0.44
CPSF7-224ENST00000544990 SENP3Q9H4L4 574 aaPredicted RBP17.33■□□□□ 0.36
CPSF7-224ENST00000544990 PLPPR3Q6T4P5 718 aa16.74■□□□□ 0.27
CPSF7-224ENST00000544990 FOXD1Q16676 465 aa15.95■□□□□ 0.14
CPSF7-224ENST00000544990 CCDC180Q9P1Z9 1646 aa15.92■□□□□ 0.14
CPSF7-224ENST00000544990 ADRA2BP18089 450 aa15.68■□□□□ 0.1
CPSF7-224ENST00000544990 ABCC9O60706 1549 aa15.62■□□□□ 0.09
CPSF7-224ENST00000544990 PPP6R1Q9UPN7 881 aa15.61■□□□□ 0.09
CPSF7-224ENST00000544990 PIAS4Q8N2W9 510 aaPredicted RBP15.21■□□□□ 0.03
CPSF7-224ENST00000544990 RB1CC1Q8TDY2 1594 aa15.02■□□□□ -0
CPSF7-224ENST00000544990 DCAF8L2P0C7V8 631 aa15.01□□□□□ -0.01
CPSF7-224ENST00000544990 NACADO15069 1562 aa14.99□□□□□ -0.01
CPSF7-224ENST00000544990 MYO15BQ96JP2 1530 aa14.87□□□□□ -0.03
CPSF7-224ENST00000544990 ZCCHC6Q5VYS8 1495 aaKnown RBP14.84□□□□□ -0.03
CPSF7-224ENST00000544990 KCNA4P22459 653 aa14.83□□□□□ -0.04
CPSF7-224ENST00000544990 DCAF1Q9Y4B6 1507 aa14.77□□□□□ -0.04
CPSF7-224ENST00000544990 PPP4R3CPQ6ZMV5 832 aa14.77□□□□□ -0.05
CPSF7-224ENST00000544990 UNC13AQ9UPW8 1703 aa14.67□□□□□ -0.06
CPSF7-224ENST00000544990 MSH5O43196 834 aa14.65□□□□□ -0.06
CPSF7-224ENST00000544990 NCBP3Q53F19 620 aaKnown RBP14.61□□□□□ -0.07
CPSF7-224ENST00000544990 PABPN1Q86U42 306 aaKnown RBP eCLIP14.59□□□□□ -0.07
CPSF7-224ENST00000544990 BICRAQ9NZM4 1560 aa14.52□□□□□ -0.08
CPSF7-224ENST00000544990 SCAF1Q9H7N4 1312 aaKnown RBP14.51□□□□□ -0.09
CPSF7-224ENST00000544990 SCRIBQ14160 1630 aa14.5□□□□□ -0.09
CPSF7-224ENST00000544990 DNAJC5BQ9UF47 199 aa14.45□□□□□ -0.1
CPSF7-224ENST00000544990 SHROOM4Q9ULL8 1493 aa14.41□□□□□ -0.1
CPSF7-224ENST00000544990 CNKSR2Q8WXI2 1034 aa14.3□□□□□ -0.12
CPSF7-224ENST00000544990 EHMT2Q96KQ7 1210 aa14.3□□□□□ -0.12
CPSF7-224ENST00000544990 SLC4A1APQ9BWU0 796 aaKnown RBP14.28□□□□□ -0.12
CPSF7-224ENST00000544990 NPM3O75607 178 aaKnown RBP14.25□□□□□ -0.13
CPSF7-224ENST00000544990 EIF4G1Q04637 1599 aaKnown RBP14.17□□□□□ -0.14
CPSF7-224ENST00000544990 CC2D2AQ9P2K1 1620 aa14.13□□□□□ -0.15
CPSF7-224ENST00000544990 MAPK8IP2Q13387 824 aaPredicted RBP14.08□□□□□ -0.16
CPSF7-224ENST00000544990 CECR2Q9BXF3 1484 aa14.05□□□□□ -0.16
CPSF7-224ENST00000544990 RNF216Q9NWF9 866 aaPredicted RBP13.91□□□□□ -0.18
CPSF7-224ENST00000544990 CSRNP3Q8WYN3 585 aa13.89□□□□□ -0.19
CPSF7-224ENST00000544990 SMARCA4P51532 1647 aa13.87□□□□□ -0.19
CPSF7-224ENST00000544990 BAZ1AQ9NRL2 1556 aaPredicted RBP13.86□□□□□ -0.19
CPSF7-224ENST00000544990 DMRT2Q9Y5R5 561 aa13.85□□□□□ -0.19
CPSF7-224ENST00000544990 NCAPD3P42695 1498 aa13.81□□□□□ -0.2
CPSF7-224ENST00000544990 SMARCA2P51531 1590 aa13.81□□□□□ -0.2
CPSF7-224ENST00000544990 ATAD2BQ9ULI0 1458 aa13.8□□□□□ -0.2
CPSF7-224ENST00000544990 MROH2BQ7Z745 1585 aa13.75□□□□□ -0.21
CPSF7-224ENST00000544990 HMGXB3Q12766 1538 aa13.74□□□□□ -0.21
CPSF7-224ENST00000544990 PEG3Q9GZU2 1588 aa13.73□□□□□ -0.21
CPSF7-224ENST00000544990 BAZ1BQ9UIG0 1483 aaKnown RBP13.7□□□□□ -0.22
CPSF7-224ENST00000544990 HOXD11P31277 338 aaPredicted RBP13.7□□□□□ -0.22
CPSF7-224ENST00000544990 WIZO95785 1651 aa13.61□□□□□ -0.23
CPSF7-224ENST00000544990 FOXD4L1Q9NU39 408 aa13.59□□□□□ -0.23
CPSF7-224ENST00000544990 RSF1Q96T23 1441 aaPredicted RBP13.57□□□□□ -0.24
CPSF7-224ENST00000544990 ZBTB22O15209 634 aa13.57□□□□□ -0.24
CPSF7-224ENST00000544990 ERCC6Q03468 1493 aa13.49□□□□□ -0.25
CPSF7-224ENST00000544990 DNAJC5Q9H3Z4 198 aa13.49□□□□□ -0.25
CPSF7-224ENST00000544990 NESP48681 1621 aa13.48□□□□□ -0.25
CPSF7-224ENST00000544990 LAMC3Q9Y6N6 1575 aa13.48□□□□□ -0.25
CPSF7-224ENST00000544990 TOP2AP11388 1531 aaKnown RBP13.46□□□□□ -0.25
CPSF7-224ENST00000544990 CADPSQ9ULU8 1353 aa13.42□□□□□ -0.26
CPSF7-224ENST00000544990 PDS5BQ9NTI5 1447 aa13.4□□□□□ -0.26
CPSF7-224ENST00000544990 CUX2O14529 1486 aa13.36□□□□□ -0.27
CPSF7-224ENST00000544990 KIF21AQ7Z4S6 1674 aa13.34□□□□□ -0.27
CPSF7-224ENST00000544990 DCAF8L1A6NGE4 600 aa13.34□□□□□ -0.27
CPSF7-224ENST00000544990 CFTRP13569 1480 aa13.31□□□□□ -0.28
CPSF7-224ENST00000544990 SLC4A2P04920 1241 aa13.31□□□□□ -0.28
CPSF7-224ENST00000544990 CCDC88BA6NC98 1476 aa13.3□□□□□ -0.28
CPSF7-224ENST00000544990 THOC2Q8NI27 1593 aaKnown RBP13.29□□□□□ -0.28
CPSF7-224ENST00000544990 FANCD2Q9BXW9 1451 aa13.26□□□□□ -0.29
CPSF7-224ENST00000544990 CEP164Q9UPV0 1460 aa13.26□□□□□ -0.29
CPSF7-224ENST00000544990 PRDM2Q13029 1718 aa13.25□□□□□ -0.29
CPSF7-224ENST00000544990 MRC2Q9UBG0 1479 aa13.24□□□□□ -0.29
CPSF7-224ENST00000544990 SUPT5HO00267 1087 aaKnown RBP13.23□□□□□ -0.29
CPSF7-224ENST00000544990 MYCNP04198 464 aaPredicted RBP13.23□□□□□ -0.29
CPSF7-224ENST00000544990 WDR62O43379 1518 aa13.18□□□□□ -0.3
CPSF7-224ENST00000544990 GRWD1Q9BQ67 446 aaKnown RBP eCLIP13.17□□□□□ -0.32e-8■■□□□ 11.7
CPSF7-224ENST00000544990 ATXN8OSP0DMR3 200 aa13.11□□□□□ -0.31
CPSF7-224ENST00000544990 URB2Q14146 1524 aaKnown RBP13.11□□□□□ -0.31
CPSF7-224ENST00000544990 ABCC8Q09428 1581 aa13.07□□□□□ -0.32
CPSF7-224ENST00000544990 TOPBP1Q92547 1522 aa13.03□□□□□ -0.32
CPSF7-224ENST00000544990 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.02□□□□□ -0.33
CPSF7-224ENST00000544990 HNRNPUL2Q1KMD3 747 aaKnown RBP13.02□□□□□ -0.33
CPSF7-224ENST00000544990 DNMBPQ6XZF7 1577 aa13.02□□□□□ -0.33
CPSF7-224ENST00000544990 IFT140Q96RY7 1462 aa12.98□□□□□ -0.33
CPSF7-224ENST00000544990 SAMD1Q6SPF0 538 aaPredicted RBP12.95□□□□□ -0.34
CPSF7-224ENST00000544990 POLA1P09884 1462 aaPredicted RBP12.91□□□□□ -0.34
CPSF7-224ENST00000544990 CUX1P39880 1505 aa12.9□□□□□ -0.34
CPSF7-224ENST00000544990 SOGA1O94964 1423 aa12.89□□□□□ -0.35
CPSF7-224ENST00000544990 ZNF608Q9ULD9 1512 aaPredicted RBP12.89□□□□□ -0.35
CPSF7-224ENST00000544990 TARBP1Q13395 1621 aaKnown RBP12.88□□□□□ -0.35
CPSF7-224ENST00000544990 U3KPZ7 1027 aaPredicted RBP12.88□□□□□ -0.35
CPSF7-224ENST00000544990 FGD5Q6ZNL6 1462 aa12.88□□□□□ -0.35
CPSF7-224ENST00000544990 EIF4G3O43432 1585 aaKnown RBP12.86□□□□□ -0.35
CPSF7-224ENST00000544990 RAD54L2Q9Y4B4 1467 aa12.85□□□□□ -0.35
CPSF7-224ENST00000544990 APLP2Q06481 763 aa12.84□□□□□ -0.35
CPSF7-224ENST00000544990 OSCARQ8IYS5 282 aa12.84□□□□□ -0.35
CPSF7-224ENST00000544990 AQRO60306 1485 aaKnown RBP eCLIP12.84□□□□□ -0.352e-7■■■■■ 48.1
CPSF7-224ENST00000544990 WRNQ14191 1432 aaPredicted RBP eCLIP12.82□□□□□ -0.36
CPSF7-224ENST00000544990 WDR97A6NE52 1622 aa12.82□□□□□ -0.36
CPSF7-224ENST00000544990 TDRD9Q8NDG6 1382 aaKnown RBP12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms