RNA–Protein interactions for RNA: ENST00000542107.5

CX3CR1-206, Transcript of C-X3-C motif chemokine receptor 1, humanhuman

APPRIS P1 TSL 4 BASIC

Gene CX3CR1, Length 3,215 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CX3CR1-206ENST00000542107 NISCHQ9Y2I1 1504 aa20.5■□□□□ 0.87
CX3CR1-206ENST00000542107 SHROOM4Q9ULL8 1493 aa17.9■□□□□ 0.46
CX3CR1-206ENST00000542107 SUPT5HO00267 1087 aaKnown RBP17.6■□□□□ 0.41
CX3CR1-206ENST00000542107 DCAF8L2P0C7V8 631 aa17.56■□□□□ 0.4
CX3CR1-206ENST00000542107 ZCCHC6Q5VYS8 1495 aaKnown RBP17.29■□□□□ 0.36
CX3CR1-206ENST00000542107 CCDC180Q9P1Z9 1646 aa17.2■□□□□ 0.34
CX3CR1-206ENST00000542107 CHIC1Q5VXU3 224 aa16.92■□□□□ 0.3
CX3CR1-206ENST00000542107 MYO15BQ96JP2 1530 aa16.78■□□□□ 0.28
CX3CR1-206ENST00000542107 DCAF1Q9Y4B6 1507 aa16.63■□□□□ 0.25
CX3CR1-206ENST00000542107 LOC105371045A0A1W2PR82 267 aa16.58■□□□□ 0.24
CX3CR1-206ENST00000542107 PCGF6Q9BYE7 350 aa16.57■□□□□ 0.24
CX3CR1-206ENST00000542107 SCRIBQ14160 1630 aa16.43■□□□□ 0.22
CX3CR1-206ENST00000542107 HRCP23327 699 aa16.4■□□□□ 0.22
CX3CR1-206ENST00000542107 ABCC9O60706 1549 aa16.36■□□□□ 0.21
CX3CR1-206ENST00000542107 FAM9AQ8IZU1 332 aaPredicted RBP16.33■□□□□ 0.21
CX3CR1-206ENST00000542107 EHMT2Q96KQ7 1210 aa16.33■□□□□ 0.21
CX3CR1-206ENST00000542107 RSF1Q96T23 1441 aaPredicted RBP16.31■□□□□ 0.2
CX3CR1-206ENST00000542107 TRIM41Q8WV44 630 aa16.29■□□□□ 0.2
CX3CR1-206ENST00000542107 PPARGC1BQ86YN6 1023 aaKnown RBP16.25■□□□□ 0.19
CX3CR1-206ENST00000542107 CECR2Q9BXF3 1484 aa16.13■□□□□ 0.17
CX3CR1-206ENST00000542107 RB1CC1Q8TDY2 1594 aa16.11■□□□□ 0.17
CX3CR1-206ENST00000542107 TRIM26Q12899 539 aaPredicted RBP16.09■□□□□ 0.17
CX3CR1-206ENST00000542107 NACADO15069 1562 aa16.02■□□□□ 0.16
CX3CR1-206ENST00000542107 MROH2BQ7Z745 1585 aa16.01■□□□□ 0.15
CX3CR1-206ENST00000542107 WIZO95785 1651 aa15.9■□□□□ 0.14
CX3CR1-206ENST00000542107 PABPN1Q86U42 306 aaKnown RBP eCLIP15.81■□□□□ 0.12
CX3CR1-206ENST00000542107 TTBK1Q5TCY1 1321 aaPredicted RBP15.77■□□□□ 0.11
CX3CR1-206ENST00000542107 BAZ1AQ9NRL2 1556 aaPredicted RBP15.72■□□□□ 0.11
CX3CR1-206ENST00000542107 ZEB1P37275 1124 aaPredicted RBP15.68■□□□□ 0.1
CX3CR1-206ENST00000542107 ABCC8Q09428 1581 aa15.64■□□□□ 0.09
CX3CR1-206ENST00000542107 CCDC88BA6NC98 1476 aa15.63■□□□□ 0.09
CX3CR1-206ENST00000542107 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP15.6■□□□□ 0.09
CX3CR1-206ENST00000542107 UBTFP17480 764 aaKnown RBP15.58■□□□□ 0.08
CX3CR1-206ENST00000542107 SMARCA4P51532 1647 aa15.57■□□□□ 0.08
CX3CR1-206ENST00000542107 TOP2AP11388 1531 aaKnown RBP15.56■□□□□ 0.08
CX3CR1-206ENST00000542107 SOGA1O94964 1423 aa15.54■□□□□ 0.08
CX3CR1-206ENST00000542107 CCER1Q8TC90 406 aaPredicted RBP15.54■□□□□ 0.08
CX3CR1-206ENST00000542107 SMARCA2P51531 1590 aa15.5■□□□□ 0.07
CX3CR1-206ENST00000542107 CSRNP3Q8WYN3 585 aa15.5■□□□□ 0.07
CX3CR1-206ENST00000542107 EIF4G1Q04637 1599 aaKnown RBP15.49■□□□□ 0.07
CX3CR1-206ENST00000542107 UNC13AQ9UPW8 1703 aa15.47■□□□□ 0.07
CX3CR1-206ENST00000542107 RUSC2Q8N2Y8 1516 aa15.46■□□□□ 0.07
CX3CR1-206ENST00000542107 RANGAP1P46060 587 aaPredicted RBP15.45■□□□□ 0.06
CX3CR1-206ENST00000542107 CEP162Q5TB80 1403 aa15.43■□□□□ 0.06
CX3CR1-206ENST00000542107 BICRAQ9NZM4 1560 aa15.37■□□□□ 0.05
CX3CR1-206ENST00000542107 WRNQ14191 1432 aaPredicted RBP eCLIP15.35■□□□□ 0.05
CX3CR1-206ENST00000542107 TNIKQ9UKE5 1360 aa15.35■□□□□ 0.05
CX3CR1-206ENST00000542107 HNRNPUL2Q1KMD3 747 aaKnown RBP15.28■□□□□ 0.04
CX3CR1-206ENST00000542107 EEA1Q15075 1411 aa15.27■□□□□ 0.04
CX3CR1-206ENST00000542107 ATAD2BQ9ULI0 1458 aa15.26■□□□□ 0.03
CX3CR1-206ENST00000542107 GOLGA3Q08378 1498 aa15.25■□□□□ 0.03
CX3CR1-206ENST00000542107 BAZ1BQ9UIG0 1483 aaKnown RBP15.25■□□□□ 0.03
CX3CR1-206ENST00000542107 APLP2Q06481 763 aa15.22■□□□□ 0.03
CX3CR1-206ENST00000542107 SYNJ1O43426 1573 aa15.2■□□□□ 0.02
CX3CR1-206ENST00000542107 DIEXFQ68CQ4 756 aaKnown RBP15.18■□□□□ 0.02
CX3CR1-206ENST00000542107 SCAF1Q9H7N4 1312 aaKnown RBP15.17■□□□□ 0.02
CX3CR1-206ENST00000542107 CLIP1P30622 1438 aa15.16■□□□□ 0.02
CX3CR1-206ENST00000542107 CEP164Q9UPV0 1460 aa15.15■□□□□ 0.02
CX3CR1-206ENST00000542107 PEG3Q9GZU2 1588 aa15.14■□□□□ 0.01
CX3CR1-206ENST00000542107 RAPGEF2Q9Y4G8 1499 aa15.12■□□□□ 0.01
CX3CR1-206ENST00000542107 NEUROD1Q13562 356 aa15.05■□□□□ -0
CX3CR1-206ENST00000542107 ZNF316A6NFI3 1004 aaPredicted RBP15.02■□□□□ -0
CX3CR1-206ENST00000542107 VPS8Q8N3P4 1428 aa15.02■□□□□ -0
CX3CR1-206ENST00000542107 ACIN1Q9UKV3 1341 aaKnown RBP15.01□□□□□ -0.01
CX3CR1-206ENST00000542107 YTHDC1Q96MU7 727 aaKnown RBP15□□□□□ -0.01
CX3CR1-206ENST00000542107 KIF21BO75037 1637 aa15□□□□□ -0.01
CX3CR1-206ENST00000542107 KANK4Q5T7N3 995 aaPredicted RBP14.95□□□□□ -0.02
CX3CR1-206ENST00000542107 CENPBP07199 599 aaPredicted RBP14.94□□□□□ -0.02
CX3CR1-206ENST00000542107 ITGAEP38570 1179 aa14.94□□□□□ -0.02
CX3CR1-206ENST00000542107 TOP2BQ02880 1626 aa14.93□□□□□ -0.02
CX3CR1-206ENST00000542107 GTF3C3Q9Y5Q9 886 aa14.92□□□□□ -0.02
CX3CR1-206ENST00000542107 NCAPD3P42695 1498 aa14.9□□□□□ -0.02
CX3CR1-206ENST00000542107 KIF27Q86VH2 1401 aa14.87□□□□□ -0.03
CX3CR1-206ENST00000542107 MIER1Q8N108 512 aa14.87□□□□□ -0.03
CX3CR1-206ENST00000542107 CUX1P39880 1505 aa14.87□□□□□ -0.03
CX3CR1-206ENST00000542107 PRXQ9BXM0 1461 aa14.86□□□□□ -0.03
CX3CR1-206ENST00000542107 ATP1B4Q9UN42 357 aaPredicted RBP14.85□□□□□ -0.03
CX3CR1-206ENST00000542107 P3H3Q8IVL6 736 aa14.82□□□□□ -0.04
CX3CR1-206ENST00000542107 ARAP1Q96P48 1450 aa14.82□□□□□ -0.04
CX3CR1-206ENST00000542107 BIVM-ERCC5R4GMW8 1640 aa14.81□□□□□ -0.04
CX3CR1-206ENST00000542107 HMGXB3Q12766 1538 aa14.8□□□□□ -0.04
CX3CR1-206ENST00000542107 CFTRP13569 1480 aa14.8□□□□□ -0.04
CX3CR1-206ENST00000542107 CUX2O14529 1486 aa14.78□□□□□ -0.04
CX3CR1-206ENST00000542107 ERICH3Q5RHP9 1530 aa14.77□□□□□ -0.05
CX3CR1-206ENST00000542107 IGF1RP08069 1367 aa14.73□□□□□ -0.05
CX3CR1-206ENST00000542107 DHX57Q6P158 1386 aaKnown RBP14.73□□□□□ -0.05
CX3CR1-206ENST00000542107 CADPSQ9ULU8 1353 aa14.72□□□□□ -0.05
CX3CR1-206ENST00000542107 ARHGAP35Q9NRY4 1499 aa14.72□□□□□ -0.05
CX3CR1-206ENST00000542107 CARMIL1Q5VZK9 1371 aa14.71□□□□□ -0.05
CX3CR1-206ENST00000542107 FAM50AQ14320 339 aaKnown RBP14.7□□□□□ -0.06
CX3CR1-206ENST00000542107 PELP1Q8IZL8 1130 aaKnown RBP14.7□□□□□ -0.06
CX3CR1-206ENST00000542107 CCNB3Q8WWL7 1395 aa14.69□□□□□ -0.06
CX3CR1-206ENST00000542107 FGD5Q6ZNL6 1462 aa14.66□□□□□ -0.06
CX3CR1-206ENST00000542107 RRBP1Q9P2E9 1410 aaKnown RBP14.62□□□□□ -0.07
CX3CR1-206ENST00000542107 CLSPNQ9HAW4 1339 aa14.61□□□□□ -0.07
CX3CR1-206ENST00000542107 RAD54L2Q9Y4B4 1467 aa14.59□□□□□ -0.07
CX3CR1-206ENST00000542107 RAB3GAP2Q9H2M9 1393 aa14.58□□□□□ -0.07
CX3CR1-206ENST00000542107 FANCD2Q9BXW9 1451 aa14.58□□□□□ -0.08
CX3CR1-206ENST00000542107 SIN3AQ96ST3 1273 aa14.57□□□□□ -0.08
CX3CR1-206ENST00000542107 CC2D2AQ9P2K1 1620 aa14.55□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 204.9 ms