RNA–Protein interactions for RNA: ENST00000541600.5

EPHA4-214, Transcript of EPH receptor A4, humanhuman

TSL 2

Gene EPHA4, Length 558 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
EPHA4-214ENST00000541600 CHIC1Q5VXU3 224 aa17.94■□□□□ 0.46
EPHA4-214ENST00000541600 AEBP2Q6ZN18 517 aaPredicted RBP17.56■□□□□ 0.4
EPHA4-214ENST00000541600 PHF23Q9BUL5 403 aaPredicted RBP15.88■□□□□ 0.13
EPHA4-214ENST00000541600 PLPPR3Q6T4P5 718 aa14.92□□□□□ -0.02
EPHA4-214ENST00000541600 SENP3Q9H4L4 574 aaPredicted RBP14.74□□□□□ -0.05
EPHA4-214ENST00000541600 NISCHQ9Y2I1 1504 aa14.15□□□□□ -0.14
EPHA4-214ENST00000541600 ADRA2BP18089 450 aa13.97□□□□□ -0.17
EPHA4-214ENST00000541600 EHMT2Q96KQ7 1210 aa13.91□□□□□ -0.18
EPHA4-214ENST00000541600 KCNA4P22459 653 aa13.89□□□□□ -0.19
EPHA4-214ENST00000541600 PPP6R1Q9UPN7 881 aa13.74□□□□□ -0.21
EPHA4-214ENST00000541600 DNAJC5BQ9UF47 199 aa13.71□□□□□ -0.21
EPHA4-214ENST00000541600 ABCC9O60706 1549 aa13.6□□□□□ -0.23
EPHA4-214ENST00000541600 FOXD1Q16676 465 aa13.59□□□□□ -0.23
EPHA4-214ENST00000541600 CSRNP3Q8WYN3 585 aa13.41□□□□□ -0.26
EPHA4-214ENST00000541600 SLC4A1APQ9BWU0 796 aaKnown RBP13.36□□□□□ -0.27
EPHA4-214ENST00000541600 PPP4R3CPQ6ZMV5 832 aa13.26□□□□□ -0.29
EPHA4-214ENST00000541600 NCBP3Q53F19 620 aaKnown RBP13.13□□□□□ -0.31
EPHA4-214ENST00000541600 PIAS4Q8N2W9 510 aaPredicted RBP13□□□□□ -0.33
EPHA4-214ENST00000541600 NPM3O75607 178 aaKnown RBP12.96□□□□□ -0.33
EPHA4-214ENST00000541600 DNAJC5Q9H3Z4 198 aa12.95□□□□□ -0.34
EPHA4-214ENST00000541600 ZBTB22O15209 634 aa12.82□□□□□ -0.36
EPHA4-214ENST00000541600 CNKSR2Q8WXI2 1034 aa12.7□□□□□ -0.38
EPHA4-214ENST00000541600 CCDC180Q9P1Z9 1646 aa12.66□□□□□ -0.38
EPHA4-214ENST00000541600 PABPN1Q86U42 306 aaKnown RBP eCLIP12.64□□□□□ -0.39
EPHA4-214ENST00000541600 SLC24A1O60721 1099 aa12.57□□□□□ -0.4
EPHA4-214ENST00000541600 SCAF1Q9H7N4 1312 aaKnown RBP12.57□□□□□ -0.4
EPHA4-214ENST00000541600 FOXD4L1Q9NU39 408 aa12.54□□□□□ -0.4
EPHA4-214ENST00000541600 RB1CC1Q8TDY2 1594 aa12.44□□□□□ -0.42
EPHA4-214ENST00000541600 RTN4Q9NQC3 1192 aaKnown RBP12.44□□□□□ -0.42
EPHA4-214ENST00000541600 AMER1Q5JTC6 1135 aaPredicted RBP12.43□□□□□ -0.42
EPHA4-214ENST00000541600 BICRAQ9NZM4 1560 aa12.34□□□□□ -0.43
EPHA4-214ENST00000541600 CECR2Q9BXF3 1484 aa12.29□□□□□ -0.44
EPHA4-214ENST00000541600 UNC13AQ9UPW8 1703 aa12.26□□□□□ -0.45
EPHA4-214ENST00000541600 RNF216Q9NWF9 866 aaPredicted RBP12.25□□□□□ -0.45
EPHA4-214ENST00000541600 MAPK8IP2Q13387 824 aaPredicted RBP12.24□□□□□ -0.45
EPHA4-214ENST00000541600 CC2D2AQ9P2K1 1620 aa12.21□□□□□ -0.46
EPHA4-214ENST00000541600 NACADO15069 1562 aa12.2□□□□□ -0.46
EPHA4-214ENST00000541600 MSH5O43196 834 aa12.19□□□□□ -0.46
EPHA4-214ENST00000541600 DCAF8L2P0C7V8 631 aa12.09□□□□□ -0.47
EPHA4-214ENST00000541600 SLC4A2P04920 1241 aa12.06□□□□□ -0.48
EPHA4-214ENST00000541600 ATXN8OSP0DMR3 200 aa12.05□□□□□ -0.48
EPHA4-214ENST00000541600 FKBP8Q14318 412 aa12.04□□□□□ -0.48
EPHA4-214ENST00000541600 TRIM41Q8WV44 630 aa12.01□□□□□ -0.49
EPHA4-214ENST00000541600 HOXD11P31277 338 aaPredicted RBP12□□□□□ -0.49
EPHA4-214ENST00000541600 EIF4G1Q04637 1599 aaKnown RBP11.98□□□□□ -0.49
EPHA4-214ENST00000541600 ZCCHC6Q5VYS8 1495 aaKnown RBP11.96□□□□□ -0.49
EPHA4-214ENST00000541600 MYCNP04198 464 aaPredicted RBP11.95□□□□□ -0.5
EPHA4-214ENST00000541600 CUX2O14529 1486 aa11.91□□□□□ -0.5
EPHA4-214ENST00000541600 DMRT2Q9Y5R5 561 aa11.91□□□□□ -0.5
EPHA4-214ENST00000541600 SHROOM4Q9ULL8 1493 aa11.82□□□□□ -0.52
EPHA4-214ENST00000541600 DCAF1Q9Y4B6 1507 aa11.81□□□□□ -0.52
EPHA4-214ENST00000541600 MYO15BQ96JP2 1530 aa11.79□□□□□ -0.52
EPHA4-214ENST00000541600 ERCC6Q03468 1493 aa11.64□□□□□ -0.55
EPHA4-214ENST00000541600 SCRIBQ14160 1630 aa11.63□□□□□ -0.55
EPHA4-214ENST00000541600 ATF5Q9Y2D1 282 aaPredicted RBP11.59□□□□□ -0.55
EPHA4-214ENST00000541600 NESP48681 1621 aa11.55□□□□□ -0.56
EPHA4-214ENST00000541600 THOC2Q8NI27 1593 aaKnown RBP11.46□□□□□ -0.57
EPHA4-214ENST00000541600 SAMD1Q6SPF0 538 aaPredicted RBP11.46□□□□□ -0.57
EPHA4-214ENST00000541600 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.45□□□□□ -0.58
EPHA4-214ENST00000541600 HNRNPUL2Q1KMD3 747 aaKnown RBP11.45□□□□□ -0.58
EPHA4-214ENST00000541600 PLCB2Q00722 1185 aa11.44□□□□□ -0.58
EPHA4-214ENST00000541600 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.4□□□□□ -0.58
EPHA4-214ENST00000541600 FBXO3Q9UK99 471 aa11.4□□□□□ -0.58
EPHA4-214ENST00000541600 NCAPD3P42695 1498 aa11.39□□□□□ -0.59
EPHA4-214ENST00000541600 SUPT5HO00267 1087 aaKnown RBP11.39□□□□□ -0.59
EPHA4-214ENST00000541600 U3KPZ7 1027 aaPredicted RBP11.33□□□□□ -0.6
EPHA4-214ENST00000541600 OSCARQ8IYS5 282 aa11.3□□□□□ -0.6
EPHA4-214ENST00000541600 DCAF8L1A6NGE4 600 aa11.29□□□□□ -0.6
EPHA4-214ENST00000541600 ZNF219Q9P2Y4 722 aaPredicted RBP11.28□□□□□ -0.6
EPHA4-214ENST00000541600 SMARCA2P51531 1590 aa11.28□□□□□ -0.6
EPHA4-214ENST00000541600 ATAD2BQ9ULI0 1458 aa11.26□□□□□ -0.61
EPHA4-214ENST00000541600 RIMBP3CA6NJZ7 1639 aa11.25□□□□□ -0.61
EPHA4-214ENST00000541600 RIMBP3BA6NNM3 1639 aa11.25□□□□□ -0.61
EPHA4-214ENST00000541600 RIMBP3Q9UFD9 1639 aa11.25□□□□□ -0.61
EPHA4-214ENST00000541600 SPDYE4A6NLX3 237 aa11.25□□□□□ -0.61
EPHA4-214ENST00000541600 HAP1P54257 671 aaPredicted RBP11.24□□□□□ -0.61
EPHA4-214ENST00000541600 BAZ1AQ9NRL2 1556 aaPredicted RBP11.24□□□□□ -0.61
EPHA4-214ENST00000541600 VASPP50552 380 aaPredicted RBP11.23□□□□□ -0.61
EPHA4-214ENST00000541600 PROM2Q8N271 834 aa11.23□□□□□ -0.61
EPHA4-214ENST00000541600 KIF21AQ7Z4S6 1674 aa11.22□□□□□ -0.61
EPHA4-214ENST00000541600 ILDR1Q86SU0 546 aaPredicted RBP11.22□□□□□ -0.61
EPHA4-214ENST00000541600 POTEDQ86YR6 584 aa11.21□□□□□ -0.61
EPHA4-214ENST00000541600 BCANQ96GW7 911 aa11.21□□□□□ -0.61
EPHA4-214ENST00000541600 TRHP20396 242 aaPredicted RBP11.17□□□□□ -0.62
EPHA4-214ENST00000541600 CYB5RLQ6IPT4 315 aa11.16□□□□□ -0.62
EPHA4-214ENST00000541600 IFNLR1Q8IU57 520 aaPredicted RBP11.14□□□□□ -0.63
EPHA4-214ENST00000541600 VSIG10Q8N0Z9 540 aa11.14□□□□□ -0.63
EPHA4-214ENST00000541600 ARHGEF11O15085 1522 aa11.14□□□□□ -0.63
EPHA4-214ENST00000541600 MKRN4PQ13434 485 aaPredicted RBP11.13□□□□□ -0.63
EPHA4-214ENST00000541600 HMGXB3Q12766 1538 aa11.13□□□□□ -0.63
EPHA4-214ENST00000541600 LAMC3Q9Y6N6 1575 aa11.12□□□□□ -0.63
EPHA4-214ENST00000541600 APLP2Q06481 763 aa11.12□□□□□ -0.63
EPHA4-214ENST00000541600 RSF1Q96T23 1441 aaPredicted RBP11.11□□□□□ -0.63
EPHA4-214ENST00000541600 WDR62O43379 1518 aa11.11□□□□□ -0.63
EPHA4-214ENST00000541600 PRKCSHP14314 528 aaPredicted RBP11.11□□□□□ -0.63
EPHA4-214ENST00000541600 PKD2Q13563 968 aa11.1□□□□□ -0.63
EPHA4-214ENST00000541600 PDS5BQ9NTI5 1447 aa11.09□□□□□ -0.63
EPHA4-214ENST00000541600 MRC2Q9UBG0 1479 aa11.09□□□□□ -0.63
EPHA4-214ENST00000541600 TAOK2Q9UL54 1235 aa11.09□□□□□ -0.63
EPHA4-214ENST00000541600 ARAP1Q96P48 1450 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms