RNA–Protein interactions for RNA: ENST00000536041.5

NPIPB4-207, Transcript of nuclear pore complex interacting protein family member B4, humanhuman

TSL 4

Gene NPIPB4, Length 513 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPB4-207ENST00000536041 AEBP2Q6ZN18 517 aaPredicted RBP24.1■■□□□ 1.45
NPIPB4-207ENST00000536041 CHIC1Q5VXU3 224 aa23.37■■□□□ 1.33
NPIPB4-207ENST00000536041 SENP3Q9H4L4 574 aaPredicted RBP20.56■□□□□ 0.88
NPIPB4-207ENST00000536041 PHF23Q9BUL5 403 aaPredicted RBP20.48■□□□□ 0.87
NPIPB4-207ENST00000536041 NISCHQ9Y2I1 1504 aa19.69■□□□□ 0.74
NPIPB4-207ENST00000536041 FOXD1Q16676 465 aa19.06■□□□□ 0.64
NPIPB4-207ENST00000536041 PLPPR3Q6T4P5 718 aa18.89■□□□□ 0.61
NPIPB4-207ENST00000536041 PPP6R1Q9UPN7 881 aa18.13■□□□□ 0.49
NPIPB4-207ENST00000536041 ADRA2BP18089 450 aa18.1■□□□□ 0.49
NPIPB4-207ENST00000536041 PIAS4Q8N2W9 510 aaPredicted RBP17.93■□□□□ 0.46
NPIPB4-207ENST00000536041 MSH5O43196 834 aa17.73■□□□□ 0.43
NPIPB4-207ENST00000536041 CCDC180Q9P1Z9 1646 aa17.64■□□□□ 0.41
NPIPB4-207ENST00000536041 ABCC9O60706 1549 aa17.62■□□□□ 0.41
NPIPB4-207ENST00000536041 RB1CC1Q8TDY2 1594 aa16.77■□□□□ 0.28
NPIPB4-207ENST00000536041 NACADO15069 1562 aa16.68■□□□□ 0.26
NPIPB4-207ENST00000536041 SCAF1Q9H7N4 1312 aaKnown RBP16.67■□□□□ 0.26
NPIPB4-207ENST00000536041 DCAF8L2P0C7V8 631 aa16.6■□□□□ 0.25
NPIPB4-207ENST00000536041 DNAJC5BQ9UF47 199 aa16.6■□□□□ 0.25
NPIPB4-207ENST00000536041 PPP4R3CPQ6ZMV5 832 aa16.59■□□□□ 0.25
NPIPB4-207ENST00000536041 POTEDQ86YR6 584 aa16.49■□□□□ 0.23
NPIPB4-207ENST00000536041 MAPK8IP2Q13387 824 aaPredicted RBP16.48■□□□□ 0.23
NPIPB4-207ENST00000536041 MYO15BQ96JP2 1530 aa16.48■□□□□ 0.23
NPIPB4-207ENST00000536041 PABPN1Q86U42 306 aaKnown RBP eCLIP16.43■□□□□ 0.22
NPIPB4-207ENST00000536041 UNC13AQ9UPW8 1703 aa16.41■□□□□ 0.22
NPIPB4-207ENST00000536041 DMRT2Q9Y5R5 561 aa16.36■□□□□ 0.21
NPIPB4-207ENST00000536041 BICRAQ9NZM4 1560 aa16.33■□□□□ 0.2
NPIPB4-207ENST00000536041 ZCCHC6Q5VYS8 1495 aaKnown RBP16.31■□□□□ 0.2
NPIPB4-207ENST00000536041 DCAF1Q9Y4B6 1507 aa16.27■□□□□ 0.2
NPIPB4-207ENST00000536041 CNKSR2Q8WXI2 1034 aa16.21■□□□□ 0.19
NPIPB4-207ENST00000536041 NCBP3Q53F19 620 aaKnown RBP16.13■□□□□ 0.17
NPIPB4-207ENST00000536041 SHROOM4Q9ULL8 1493 aa16.07■□□□□ 0.16
NPIPB4-207ENST00000536041 SCRIBQ14160 1630 aa16.05■□□□□ 0.16
NPIPB4-207ENST00000536041 RNF216Q9NWF9 866 aaPredicted RBP15.95■□□□□ 0.14
NPIPB4-207ENST00000536041 HOXD11P31277 338 aaPredicted RBP15.94■□□□□ 0.14
NPIPB4-207ENST00000536041 CC2D2AQ9P2K1 1620 aa15.93■□□□□ 0.14
NPIPB4-207ENST00000536041 KCNA4P22459 653 aa15.91■□□□□ 0.14
NPIPB4-207ENST00000536041 EIF4G1Q04637 1599 aaKnown RBP15.89■□□□□ 0.13
NPIPB4-207ENST00000536041 CECR2Q9BXF3 1484 aa15.87■□□□□ 0.13
NPIPB4-207ENST00000536041 NPM3O75607 178 aaKnown RBP15.83■□□□□ 0.12
NPIPB4-207ENST00000536041 DCAF8L1A6NGE4 600 aa15.62■□□□□ 0.09
NPIPB4-207ENST00000536041 NCAPD3P42695 1498 aa15.43■□□□□ 0.06
NPIPB4-207ENST00000536041 ATAD2BQ9ULI0 1458 aa15.37■□□□□ 0.05
NPIPB4-207ENST00000536041 SMARCA4P51532 1647 aa15.34■□□□□ 0.05
NPIPB4-207ENST00000536041 SMARCA2P51531 1590 aa15.3■□□□□ 0.04
NPIPB4-207ENST00000536041 HMGXB3Q12766 1538 aa15.27■□□□□ 0.04
NPIPB4-207ENST00000536041 BAZ1AQ9NRL2 1556 aaPredicted RBP15.27■□□□□ 0.03
NPIPB4-207ENST00000536041 PEG3Q9GZU2 1588 aa15.21■□□□□ 0.03
NPIPB4-207ENST00000536041 DNAJC5Q9H3Z4 198 aa15.21■□□□□ 0.03
NPIPB4-207ENST00000536041 BAZ1BQ9UIG0 1483 aaKnown RBP15.19■□□□□ 0.02
NPIPB4-207ENST00000536041 ERCC6Q03468 1493 aa15.18■□□□□ 0.02
NPIPB4-207ENST00000536041 MROH2BQ7Z745 1585 aa15.18■□□□□ 0.02
NPIPB4-207ENST00000536041 CUX2O14529 1486 aa15.17■□□□□ 0.02
NPIPB4-207ENST00000536041 GRWD1Q9BQ67 446 aaKnown RBP eCLIP15.17■□□□□ 0.02
NPIPB4-207ENST00000536041 NESP48681 1621 aa15.17■□□□□ 0.02
NPIPB4-207ENST00000536041 SLC4A1APQ9BWU0 796 aaKnown RBP15.14■□□□□ 0.01
NPIPB4-207ENST00000536041 RNF39Q9H2S5 420 aa15.14■□□□□ 0.01
NPIPB4-207ENST00000536041 LAMC3Q9Y6N6 1575 aa15.04■□□□□ -0
NPIPB4-207ENST00000536041 SLC4A2P04920 1241 aa15□□□□□ -0.01
NPIPB4-207ENST00000536041 WIZO95785 1651 aa14.99□□□□□ -0.01
NPIPB4-207ENST00000536041 THOC2Q8NI27 1593 aaKnown RBP14.98□□□□□ -0.01
NPIPB4-207ENST00000536041 C1QBPQ07021 282 aaKnown RBP14.97□□□□□ -0.01
NPIPB4-207ENST00000536041 PDS5BQ9NTI5 1447 aa14.95□□□□□ -0.02
NPIPB4-207ENST00000536041 CADPSQ9ULU8 1353 aa14.95□□□□□ -0.02
NPIPB4-207ENST00000536041 KIF21AQ7Z4S6 1674 aa14.94□□□□□ -0.02
NPIPB4-207ENST00000536041 CACNB1Q02641 598 aaPredicted RBP14.9□□□□□ -0.02
NPIPB4-207ENST00000536041 U3KPZ7 1027 aaPredicted RBP14.89□□□□□ -0.03
NPIPB4-207ENST00000536041 RSF1Q96T23 1441 aaPredicted RBP14.88□□□□□ -0.03
NPIPB4-207ENST00000536041 MRC2Q9UBG0 1479 aa14.82□□□□□ -0.04
NPIPB4-207ENST00000536041 WDR62O43379 1518 aa14.79□□□□□ -0.04
NPIPB4-207ENST00000536041 TOP2AP11388 1531 aaKnown RBP14.78□□□□□ -0.04
NPIPB4-207ENST00000536041 CFTRP13569 1480 aa14.78□□□□□ -0.04
NPIPB4-207ENST00000536041 FANCD2Q9BXW9 1451 aa14.76□□□□□ -0.05
NPIPB4-207ENST00000536041 FOXD4L1Q9NU39 408 aa14.75□□□□□ -0.05
NPIPB4-207ENST00000536041 CEP164Q9UPV0 1460 aa14.75□□□□□ -0.05
NPIPB4-207ENST00000536041 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.7□□□□□ -0.06
NPIPB4-207ENST00000536041 HNRNPUL2Q1KMD3 747 aaKnown RBP14.7□□□□□ -0.06
NPIPB4-207ENST00000536041 MYCNP04198 464 aaPredicted RBP14.68□□□□□ -0.06
NPIPB4-207ENST00000536041 URB2Q14146 1524 aaKnown RBP14.66□□□□□ -0.06
NPIPB4-207ENST00000536041 CCDC88BA6NC98 1476 aa14.64□□□□□ -0.07
NPIPB4-207ENST00000536041 APLP2Q06481 763 aa14.62□□□□□ -0.07
NPIPB4-207ENST00000536041 ZBTB22O15209 634 aa14.61□□□□□ -0.07
NPIPB4-207ENST00000536041 SAMD1Q6SPF0 538 aaPredicted RBP14.61□□□□□ -0.07
NPIPB4-207ENST00000536041 PRDM2Q13029 1718 aa14.59□□□□□ -0.07
NPIPB4-207ENST00000536041 OSCARQ8IYS5 282 aa14.52□□□□□ -0.09
NPIPB4-207ENST00000536041 SPINK5Q9NQ38 1064 aaPredicted RBP14.51□□□□□ -0.09
NPIPB4-207ENST00000536041 CAPN15O75808 1086 aa14.49□□□□□ -0.09
NPIPB4-207ENST00000536041 TOPBP1Q92547 1522 aa14.49□□□□□ -0.09
NPIPB4-207ENST00000536041 TRIM41Q8WV44 630 aa14.48□□□□□ -0.09
NPIPB4-207ENST00000536041 IFT140Q96RY7 1462 aa14.47□□□□□ -0.09
NPIPB4-207ENST00000536041 ZNF608Q9ULD9 1512 aaPredicted RBP14.46□□□□□ -0.09
NPIPB4-207ENST00000536041 ABCC8Q09428 1581 aa14.46□□□□□ -0.09
NPIPB4-207ENST00000536041 DNMBPQ6XZF7 1577 aa14.42□□□□□ -0.1
NPIPB4-207ENST00000536041 ZNF219Q9P2Y4 722 aaPredicted RBP14.41□□□□□ -0.1
NPIPB4-207ENST00000536041 EHMT2Q96KQ7 1210 aa14.38□□□□□ -0.11
NPIPB4-207ENST00000536041 TARBP1Q13395 1621 aaKnown RBP14.37□□□□□ -0.11
NPIPB4-207ENST00000536041 CSRNP3Q8WYN3 585 aa14.36□□□□□ -0.11
NPIPB4-207ENST00000536041 EIF4G3O43432 1585 aaKnown RBP14.35□□□□□ -0.11
NPIPB4-207ENST00000536041 TRHP20396 242 aaPredicted RBP14.35□□□□□ -0.11
NPIPB4-207ENST00000536041 AQRO60306 1485 aaKnown RBP eCLIP14.34□□□□□ -0.119e-14■■■□□ 18.6
NPIPB4-207ENST00000536041 POLA1P09884 1462 aaPredicted RBP14.33□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms