RNA–Protein interactions for RNA: ENST00000534839.1

TNC-209, Transcript of tenascin C, humanhuman

TSL 3

Gene TNC, Length 734 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNC-209ENST00000534839 AEBP2Q6ZN18 517 aaPredicted RBP33.18■■■□□ 2.9
TNC-209ENST00000534839 CHIC1Q5VXU3 224 aa32.21■■■□□ 2.75
TNC-209ENST00000534839 PHF23Q9BUL5 403 aaPredicted RBP28.44■■■□□ 2.14
TNC-209ENST00000534839 SENP3Q9H4L4 574 aaPredicted RBP27.98■■■□□ 2.07
TNC-209ENST00000534839 NISCHQ9Y2I1 1504 aa26.46■■□□□ 1.83
TNC-209ENST00000534839 FOXD1Q16676 465 aa26.11■■□□□ 1.77
TNC-209ENST00000534839 PLPPR3Q6T4P5 718 aa26.05■■□□□ 1.76
TNC-209ENST00000534839 ABCC9O60706 1549 aa25.7■■□□□ 1.7
TNC-209ENST00000534839 DNAJC5BQ9UF47 199 aa25.39■■□□□ 1.66
TNC-209ENST00000534839 PPP6R1Q9UPN7 881 aa25.14■■□□□ 1.62
TNC-209ENST00000534839 ADRA2BP18089 450 aa25.08■■□□□ 1.61
TNC-209ENST00000534839 PIAS4Q8N2W9 510 aaPredicted RBP24.53■■□□□ 1.52
TNC-209ENST00000534839 CCDC180Q9P1Z9 1646 aa24.28■■□□□ 1.48
TNC-209ENST00000534839 DNAJC5Q9H3Z4 198 aa24.25■■□□□ 1.47
TNC-209ENST00000534839 MSH5O43196 834 aa23.94■■□□□ 1.42
TNC-209ENST00000534839 RB1CC1Q8TDY2 1594 aa23.79■■□□□ 1.4
TNC-209ENST00000534839 PABPN1Q86U42 306 aaKnown RBP eCLIP23.74■■□□□ 1.39
TNC-209ENST00000534839 NACADO15069 1562 aa23.29■■□□□ 1.32
TNC-209ENST00000534839 CECR2Q9BXF3 1484 aa23.27■■□□□ 1.32
TNC-209ENST00000534839 UNC13AQ9UPW8 1703 aa23.27■■□□□ 1.32
TNC-209ENST00000534839 BICRAQ9NZM4 1560 aa23.22■■□□□ 1.31
TNC-209ENST00000534839 CC2D2AQ9P2K1 1620 aa23.11■■□□□ 1.29
TNC-209ENST00000534839 PPP4R3CPQ6ZMV5 832 aa23.03■■□□□ 1.28
TNC-209ENST00000534839 DCAF8L2P0C7V8 631 aa22.96■■□□□ 1.27
TNC-209ENST00000534839 MAPK8IP2Q13387 824 aaPredicted RBP22.82■■□□□ 1.24
TNC-209ENST00000534839 SCAF1Q9H7N4 1312 aaKnown RBP22.73■■□□□ 1.23
TNC-209ENST00000534839 EIF4G1Q04637 1599 aaKnown RBP22.72■■□□□ 1.23
TNC-209ENST00000534839 CUX2O14529 1486 aa22.65■■□□□ 1.22
TNC-209ENST00000534839 SHROOM4Q9ULL8 1493 aa22.65■■□□□ 1.22
TNC-209ENST00000534839 TRIM41Q8WV44 630 aa22.64■■□□□ 1.21
TNC-209ENST00000534839 MYO15BQ96JP2 1530 aa22.5■■□□□ 1.19
TNC-209ENST00000534839 KCNA4P22459 653 aa22.47■■□□□ 1.19
TNC-209ENST00000534839 DMRT2Q9Y5R5 561 aa22.38■■□□□ 1.17
TNC-209ENST00000534839 CNKSR2Q8WXI2 1034 aa22.33■■□□□ 1.17
TNC-209ENST00000534839 NCBP3Q53F19 620 aaKnown RBP22.27■■□□□ 1.16
TNC-209ENST00000534839 ERCC6Q03468 1493 aa22.23■■□□□ 1.15
TNC-209ENST00000534839 SCRIBQ14160 1630 aa22.1■■□□□ 1.13
TNC-209ENST00000534839 NPM3O75607 178 aaKnown RBP22.1■■□□□ 1.13
TNC-209ENST00000534839 POTEDQ86YR6 584 aa22.06■■□□□ 1.12
TNC-209ENST00000534839 RNF216Q9NWF9 866 aaPredicted RBP21.91■■□□□ 1.1
TNC-209ENST00000534839 HOXD11P31277 338 aaPredicted RBP21.88■■□□□ 1.09
TNC-209ENST00000534839 DCAF1Q9Y4B6 1507 aa21.73■■□□□ 1.07
TNC-209ENST00000534839 THOC2Q8NI27 1593 aaKnown RBP21.72■■□□□ 1.07
TNC-209ENST00000534839 NESP48681 1621 aa21.7■■□□□ 1.06
TNC-209ENST00000534839 ZCCHC6Q5VYS8 1495 aaKnown RBP21.63■■□□□ 1.05
TNC-209ENST00000534839 NCAPD3P42695 1498 aa21.55■■□□□ 1.04
TNC-209ENST00000534839 SMARCA2P51531 1590 aa21.47■■□□□ 1.03
TNC-209ENST00000534839 BAZ1AQ9NRL2 1556 aaPredicted RBP21.41■■□□□ 1.02
TNC-209ENST00000534839 DCAF8L1A6NGE4 600 aa21.41■■□□□ 1.02
TNC-209ENST00000534839 OSCARQ8IYS5 282 aa21.41■■□□□ 1.02
TNC-209ENST00000534839 KIF21AQ7Z4S6 1674 aa21.33■■□□□ 1
TNC-209ENST00000534839 ATAD2BQ9ULI0 1458 aa21.31■■□□□ 1
TNC-209ENST00000534839 RIMBP3CA6NJZ7 1639 aa21.3■■□□□ 1
TNC-209ENST00000534839 RIMBP3BA6NNM3 1639 aa21.3■■□□□ 1
TNC-209ENST00000534839 RIMBP3Q9UFD9 1639 aa21.3■■□□□ 1
TNC-209ENST00000534839 SLC4A1APQ9BWU0 796 aaKnown RBP21.3■■□□□ 1
TNC-209ENST00000534839 LAMC3Q9Y6N6 1575 aa21.26■□□□□ 0.99
TNC-209ENST00000534839 TRHP20396 242 aaPredicted RBP21.24■□□□□ 0.99
TNC-209ENST00000534839 HMGXB3Q12766 1538 aa21.24■□□□□ 0.99
TNC-209ENST00000534839 PDS5BQ9NTI5 1447 aa21.18■□□□□ 0.98
TNC-209ENST00000534839 MRC2Q9UBG0 1479 aa21.1■□□□□ 0.97
TNC-209ENST00000534839 ARHGEF11O15085 1522 aa21.09■□□□□ 0.97
TNC-209ENST00000534839 WDR62O43379 1518 aa21.09■□□□□ 0.97
TNC-209ENST00000534839 CYB5RLQ6IPT4 315 aa21.04■□□□□ 0.96
TNC-209ENST00000534839 ILDR1Q86SU0 546 aaPredicted RBP21■□□□□ 0.95
TNC-209ENST00000534839 BAZ1BQ9UIG0 1483 aaKnown RBP21■□□□□ 0.95
TNC-209ENST00000534839 SLC4A2P04920 1241 aa20.93■□□□□ 0.94
TNC-209ENST00000534839 SMARCA4P51532 1647 aa20.92■□□□□ 0.94
TNC-209ENST00000534839 CADPSQ9ULU8 1353 aa20.84■□□□□ 0.93
TNC-209ENST00000534839 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.83■□□□□ 0.93
TNC-209ENST00000534839 ARAP1Q96P48 1450 aa20.81■□□□□ 0.92
TNC-209ENST00000534839 ZBTB22O15209 634 aa20.74■□□□□ 0.91
TNC-209ENST00000534839 CEP164Q9UPV0 1460 aa20.73■□□□□ 0.91
TNC-209ENST00000534839 PEG3Q9GZU2 1588 aa20.71■□□□□ 0.91
TNC-209ENST00000534839 EHMT2Q96KQ7 1210 aa20.68■□□□□ 0.9
TNC-209ENST00000534839 RNF39Q9H2S5 420 aa20.61■□□□□ 0.89
TNC-209ENST00000534839 FANCD2Q9BXW9 1451 aa20.61■□□□□ 0.89
TNC-209ENST00000534839 FOXD4L1Q9NU39 408 aa20.59■□□□□ 0.89
TNC-209ENST00000534839 U3KPZ7 1027 aaPredicted RBP20.56■□□□□ 0.88
TNC-209ENST00000534839 URB2Q14146 1524 aaKnown RBP20.55■□□□□ 0.88
TNC-209ENST00000534839 ZNF608Q9ULD9 1512 aaPredicted RBP20.53■□□□□ 0.88
TNC-209ENST00000534839 CSRNP3Q8WYN3 585 aa20.5■□□□□ 0.87
TNC-209ENST00000534839 RSF1Q96T23 1441 aaPredicted RBP20.49■□□□□ 0.87
TNC-209ENST00000534839 CHD1O14646 1710 aa20.4■□□□□ 0.86
TNC-209ENST00000534839 MROH2BQ7Z745 1585 aa20.4■□□□□ 0.86
TNC-209ENST00000534839 IFT140Q96RY7 1462 aa20.37■□□□□ 0.85
TNC-209ENST00000534839 MYCNP04198 464 aaPredicted RBP20.33■□□□□ 0.85
TNC-209ENST00000534839 CFTRP13569 1480 aa20.3■□□□□ 0.84
TNC-209ENST00000534839 EIF4G3O43432 1585 aaKnown RBP20.3■□□□□ 0.84
TNC-209ENST00000534839 FBLN2P98095 1184 aa20.3■□□□□ 0.84
TNC-209ENST00000534839 C1QBPQ07021 282 aaKnown RBP20.27■□□□□ 0.84
TNC-209ENST00000534839 KDM4FA0A1W2PPD8 638 aa20.23■□□□□ 0.83
TNC-209ENST00000534839 AQRO60306 1485 aaKnown RBP eCLIP20.17■□□□□ 0.82
TNC-209ENST00000534839 CLASP1Q7Z460 1538 aa20.16■□□□□ 0.82
TNC-209ENST00000534839 CACNB1Q02641 598 aaPredicted RBP20.09■□□□□ 0.81
TNC-209ENST00000534839 WIZO95785 1651 aa20.09■□□□□ 0.81
TNC-209ENST00000534839 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP20.07■□□□□ 0.8
TNC-209ENST00000534839 HNRNPUL2Q1KMD3 747 aaKnown RBP20.07■□□□□ 0.8
TNC-209ENST00000534839 TOPBP1Q92547 1522 aa20.07■□□□□ 0.8
TNC-209ENST00000534839 SAMD1Q6SPF0 538 aaPredicted RBP20.06■□□□□ 0.8
Retrieved 100 of 20,778 RNA–protein pairs in 87.2 ms