RNA–Protein interactions for RNA: ENST00000533761.5

CCDC90B-218, Transcript of coiled-coil domain containing 90B, humanhuman

TSL 5

Gene CCDC90B, Length 1,587 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC90B-218ENST00000533761 AEBP2Q6ZN18 517 aaPredicted RBP34.38■■■■□ 3.09
CCDC90B-218ENST00000533761 CHIC1Q5VXU3 224 aa32.18■■■□□ 2.74
CCDC90B-218ENST00000533761 SENP3Q9H4L4 574 aaPredicted RBP29.54■■■□□ 2.32
CCDC90B-218ENST00000533761 PHF23Q9BUL5 403 aaPredicted RBP28.99■■■□□ 2.23
CCDC90B-218ENST00000533761 FOXD1Q16676 465 aa27.61■■■□□ 2.01
CCDC90B-218ENST00000533761 POTEDQ86YR6 584 aa27.23■■□□□ 1.95
CCDC90B-218ENST00000533761 MSH5O43196 834 aa26.26■■□□□ 1.79
CCDC90B-218ENST00000533761 PIAS4Q8N2W9 510 aaPredicted RBP25.58■■□□□ 1.69
CCDC90B-218ENST00000533761 NISCHQ9Y2I1 1504 aa25.43■■□□□ 1.66
CCDC90B-218ENST00000533761 PPP6R1Q9UPN7 881 aa25.05■■□□□ 1.6
CCDC90B-218ENST00000533761 PLPPR3Q6T4P5 718 aa24.95■■□□□ 1.58
CCDC90B-218ENST00000533761 ADRA2BP18089 450 aa24.93■■□□□ 1.58
CCDC90B-218ENST00000533761 DMRT2Q9Y5R5 561 aa23.27■■□□□ 1.32
CCDC90B-218ENST00000533761 MAPK8IP2Q13387 824 aaPredicted RBP23.18■■□□□ 1.3
CCDC90B-218ENST00000533761 CACNB1Q02641 598 aaPredicted RBP23.1■■□□□ 1.29
CCDC90B-218ENST00000533761 SCAF1Q9H7N4 1312 aaKnown RBP22.89■■□□□ 1.25
CCDC90B-218ENST00000533761 CCDC180Q9P1Z9 1646 aa22.45■■□□□ 1.18
CCDC90B-218ENST00000533761 DCAF8L1A6NGE4 600 aa22.34■■□□□ 1.17
CCDC90B-218ENST00000533761 RNF39Q9H2S5 420 aa22.29■■□□□ 1.16
CCDC90B-218ENST00000533761 HOXD11P31277 338 aaPredicted RBP22.04■■□□□ 1.12
CCDC90B-218ENST00000533761 C1QBPQ07021 282 aaKnown RBP21.94■■□□□ 1.1
CCDC90B-218ENST00000533761 PPP4R3CPQ6ZMV5 832 aa21.73■■□□□ 1.07
CCDC90B-218ENST00000533761 ABCC9O60706 1549 aa21.69■■□□□ 1.06
CCDC90B-218ENST00000533761 RNF216Q9NWF9 866 aaPredicted RBP21.61■■□□□ 1.05
CCDC90B-218ENST00000533761 CNKSR2Q8WXI2 1034 aa21.56■■□□□ 1.04
CCDC90B-218ENST00000533761 DNAJC5BQ9UF47 199 aa21.51■■□□□ 1.03
CCDC90B-218ENST00000533761 ZCCHC6Q5VYS8 1495 aaKnown RBP21.23■□□□□ 0.99
CCDC90B-218ENST00000533761 DCAF8L2P0C7V8 631 aa21.2■□□□□ 0.98
CCDC90B-218ENST00000533761 POTEHQ6S545 545 aa21.16■□□□□ 0.98
CCDC90B-218ENST00000533761 NACADO15069 1562 aa21.07■□□□□ 0.96
CCDC90B-218ENST00000533761 DCAF1Q9Y4B6 1507 aa21.06■□□□□ 0.96
CCDC90B-218ENST00000533761 MYO15BQ96JP2 1530 aa21.04■□□□□ 0.96
CCDC90B-218ENST00000533761 RB1CC1Q8TDY2 1594 aa21.01■□□□□ 0.95
CCDC90B-218ENST00000533761 GRWD1Q9BQ67 446 aaKnown RBP eCLIP20.99■□□□□ 0.95
CCDC90B-218ENST00000533761 NCBP3Q53F19 620 aaKnown RBP20.63■□□□□ 0.89
CCDC90B-218ENST00000533761 DSG3P32926 999 aa20.55■□□□□ 0.88
CCDC90B-218ENST00000533761 SCRIBQ14160 1630 aa20.5■□□□□ 0.87
CCDC90B-218ENST00000533761 UNC13AQ9UPW8 1703 aa20.48■□□□□ 0.87
CCDC90B-218ENST00000533761 CAPN15O75808 1086 aa20.44■□□□□ 0.86
CCDC90B-218ENST00000533761 U3KPZ7 1027 aaPredicted RBP20.42■□□□□ 0.86
CCDC90B-218ENST00000533761 SPINK5Q9NQ38 1064 aaPredicted RBP20.4■□□□□ 0.86
CCDC90B-218ENST00000533761 PABPN1Q86U42 306 aaKnown RBP eCLIP20.34■□□□□ 0.85
CCDC90B-218ENST00000533761 BICRAQ9NZM4 1560 aa20.32■□□□□ 0.84
CCDC90B-218ENST00000533761 NPM3O75607 178 aaKnown RBP20.29■□□□□ 0.84
CCDC90B-218ENST00000533761 SHROOM4Q9ULL8 1493 aa20.28■□□□□ 0.84
CCDC90B-218ENST00000533761 TRHP20396 242 aaPredicted RBP19.87■□□□□ 0.77
CCDC90B-218ENST00000533761 ABCB7O75027 752 aa19.85■□□□□ 0.77
CCDC90B-218ENST00000533761 ZNF219Q9P2Y4 722 aaPredicted RBP19.83■□□□□ 0.77
CCDC90B-218ENST00000533761 APLP2Q06481 763 aa19.83■□□□□ 0.76
CCDC90B-218ENST00000533761 EIF4G1Q04637 1599 aaKnown RBP19.78■□□□□ 0.76
CCDC90B-218ENST00000533761 CECR2Q9BXF3 1484 aa19.75■□□□□ 0.75
CCDC90B-218ENST00000533761 BAZ1AQ9NRL2 1556 aaPredicted RBP19.7■□□□□ 0.74
CCDC90B-218ENST00000533761 RBM42Q9BTD8 480 aaKnown RBP19.67■□□□□ 0.74
CCDC90B-218ENST00000533761 SMARCA4P51532 1647 aa19.65■□□□□ 0.74
CCDC90B-218ENST00000533761 CC2D2AQ9P2K1 1620 aa19.62■□□□□ 0.73
CCDC90B-218ENST00000533761 SLC4A2P04920 1241 aa19.61■□□□□ 0.73
CCDC90B-218ENST00000533761 CHRDL2Q6WN34 429 aa19.59■□□□□ 0.73
CCDC90B-218ENST00000533761 MROH2BQ7Z745 1585 aa19.59■□□□□ 0.73
CCDC90B-218ENST00000533761 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP19.57■□□□□ 0.72
CCDC90B-218ENST00000533761 HNRNPUL2Q1KMD3 747 aaKnown RBP19.57■□□□□ 0.72
CCDC90B-218ENST00000533761 RSF1Q96T23 1441 aaPredicted RBP19.5■□□□□ 0.71
CCDC90B-218ENST00000533761 SMARCA2P51531 1590 aa19.49■□□□□ 0.71
CCDC90B-218ENST00000533761 ATAD2BQ9ULI0 1458 aa19.48■□□□□ 0.71
CCDC90B-218ENST00000533761 PEG3Q9GZU2 1588 aa19.46■□□□□ 0.71
CCDC90B-218ENST00000533761 NCAPD3P42695 1498 aa19.44■□□□□ 0.7
CCDC90B-218ENST00000533761 SAMD1Q6SPF0 538 aaPredicted RBP19.4■□□□□ 0.7
CCDC90B-218ENST00000533761 SP7Q8TDD2 431 aaPredicted RBP19.39■□□□□ 0.69
CCDC90B-218ENST00000533761 WIZO95785 1651 aa19.39■□□□□ 0.69
CCDC90B-218ENST00000533761 BAZ1BQ9UIG0 1483 aaKnown RBP19.36■□□□□ 0.69
CCDC90B-218ENST00000533761 HMGXB3Q12766 1538 aa19.35■□□□□ 0.69
CCDC90B-218ENST00000533761 SUPT5HO00267 1087 aaKnown RBP19.28■□□□□ 0.68
CCDC90B-218ENST00000533761 TOP2AP11388 1531 aaKnown RBP19.21■□□□□ 0.67
CCDC90B-218ENST00000533761 POLA2Q14181 598 aa19.12■□□□□ 0.65
CCDC90B-218ENST00000533761 KCNA4P22459 653 aa19.02■□□□□ 0.64
CCDC90B-218ENST00000533761 AKT1S1Q96B36 256 aa19■□□□□ 0.63
CCDC90B-218ENST00000533761 CCDC88BA6NC98 1476 aa18.99■□□□□ 0.63
CCDC90B-218ENST00000533761 PIP4P2Q8N4L2 257 aa18.91■□□□□ 0.62
CCDC90B-218ENST00000533761 CADPSQ9ULU8 1353 aa18.9■□□□□ 0.62
CCDC90B-218ENST00000533761 LAMC3Q9Y6N6 1575 aa18.87■□□□□ 0.61
CCDC90B-218ENST00000533761 NESP48681 1621 aa18.84■□□□□ 0.61
CCDC90B-218ENST00000533761 HAX1O00165 279 aa18.84■□□□□ 0.61
CCDC90B-218ENST00000533761 CFTRP13569 1480 aa18.84■□□□□ 0.61
CCDC90B-218ENST00000533761 MYCNP04198 464 aaPredicted RBP18.81■□□□□ 0.6
CCDC90B-218ENST00000533761 REM2Q8IYK8 340 aaPredicted RBP18.81■□□□□ 0.6
CCDC90B-218ENST00000533761 PDS5BQ9NTI5 1447 aa18.77■□□□□ 0.59
CCDC90B-218ENST00000533761 ZBTB12Q9Y330 459 aaPredicted RBP18.71■□□□□ 0.59
CCDC90B-218ENST00000533761 ERCC6Q03468 1493 aa18.7■□□□□ 0.58
CCDC90B-218ENST00000533761 PRDM2Q13029 1718 aa18.68■□□□□ 0.58
CCDC90B-218ENST00000533761 FANCD2Q9BXW9 1451 aa18.67■□□□□ 0.58
CCDC90B-218ENST00000533761 FXR2P51116 673 aaKnown RBP eCLIP18.65■□□□□ 0.58
CCDC90B-218ENST00000533761 CEP164Q9UPV0 1460 aa18.62■□□□□ 0.57
CCDC90B-218ENST00000533761 KIF21AQ7Z4S6 1674 aa18.62■□□□□ 0.57
CCDC90B-218ENST00000533761 PITPNM1O00562 1244 aa18.6■□□□□ 0.57
CCDC90B-218ENST00000533761 OSCARQ8IYS5 282 aa18.54■□□□□ 0.56
CCDC90B-218ENST00000533761 MRC2Q9UBG0 1479 aa18.52■□□□□ 0.55
CCDC90B-218ENST00000533761 EVX2Q03828 476 aa18.49■□□□□ 0.55
CCDC90B-218ENST00000533761 THOC2Q8NI27 1593 aaKnown RBP18.47■□□□□ 0.55
CCDC90B-218ENST00000533761 ABCC8Q09428 1581 aa18.46■□□□□ 0.55
CCDC90B-218ENST00000533761 WDR62O43379 1518 aa18.43■□□□□ 0.54
CCDC90B-218ENST00000533761 URB2Q14146 1524 aaKnown RBP18.43■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms