RNA–Protein interactions for RNA: ENST00000530724.1

TRIM3-210, Transcript of tripartite motif containing 3, humanhuman

TSL 2

Gene TRIM3, Length 651 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM3-210ENST00000530724 NISCHQ9Y2I1 1504 aa23.14■■□□□ 1.3
TRIM3-210ENST00000530724 HRCP23327 699 aa19.76■□□□□ 0.75
TRIM3-210ENST00000530724 ZCCHC6Q5VYS8 1495 aaKnown RBP19.74■□□□□ 0.75
TRIM3-210ENST00000530724 CCDC180Q9P1Z9 1646 aa19.59■□□□□ 0.73
TRIM3-210ENST00000530724 DCAF1Q9Y4B6 1507 aa19.44■□□□□ 0.7
TRIM3-210ENST00000530724 CHIC1Q5VXU3 224 aa19.42■□□□□ 0.7
TRIM3-210ENST00000530724 SHROOM4Q9ULL8 1493 aa19.41■□□□□ 0.7
TRIM3-210ENST00000530724 MYO15BQ96JP2 1530 aa19.37■□□□□ 0.69
TRIM3-210ENST00000530724 SUPT5HO00267 1087 aaKnown RBP19.32■□□□□ 0.68
TRIM3-210ENST00000530724 PELP1Q8IZL8 1130 aaKnown RBP19.09■□□□□ 0.65
TRIM3-210ENST00000530724 PCGF6Q9BYE7 350 aa19.03■□□□□ 0.64
TRIM3-210ENST00000530724 ZEB1P37275 1124 aaPredicted RBP18.92■□□□□ 0.62
TRIM3-210ENST00000530724 TRIM26Q12899 539 aaPredicted RBP18.9■□□□□ 0.62
TRIM3-210ENST00000530724 PPARGC1BQ86YN6 1023 aaKnown RBP18.79■□□□□ 0.6
TRIM3-210ENST00000530724 ABCC9O60706 1549 aa18.7■□□□□ 0.58
TRIM3-210ENST00000530724 LOC105371045A0A1W2PR82 267 aa18.53■□□□□ 0.56
TRIM3-210ENST00000530724 RSF1Q96T23 1441 aaPredicted RBP18.45■□□□□ 0.54
TRIM3-210ENST00000530724 MYT1Q01538 1121 aa18.44■□□□□ 0.54
TRIM3-210ENST00000530724 RB1CC1Q8TDY2 1594 aa18.42■□□□□ 0.54
TRIM3-210ENST00000530724 SCAF1Q9H7N4 1312 aaKnown RBP18.33■□□□□ 0.53
TRIM3-210ENST00000530724 DCAF8L2P0C7V8 631 aa18.22■□□□□ 0.51
TRIM3-210ENST00000530724 TRIM41Q8WV44 630 aa18.19■□□□□ 0.5
TRIM3-210ENST00000530724 ACIN1Q9UKV3 1341 aaKnown RBP18.13■□□□□ 0.49
TRIM3-210ENST00000530724 WRNQ14191 1432 aaPredicted RBP eCLIP18.12■□□□□ 0.49
TRIM3-210ENST00000530724 EIF4G1Q04637 1599 aaKnown RBP18.03■□□□□ 0.48
TRIM3-210ENST00000530724 SCRIBQ14160 1630 aa17.98■□□□□ 0.47
TRIM3-210ENST00000530724 CENPBP07199 599 aaPredicted RBP17.97■□□□□ 0.47
TRIM3-210ENST00000530724 NACADO15069 1562 aa17.96■□□□□ 0.47
TRIM3-210ENST00000530724 BAZ1AQ9NRL2 1556 aaPredicted RBP17.9■□□□□ 0.46
TRIM3-210ENST00000530724 NEUROD1Q13562 356 aa17.88■□□□□ 0.45
TRIM3-210ENST00000530724 MROH2BQ7Z745 1585 aa17.86■□□□□ 0.45
TRIM3-210ENST00000530724 EEA1Q15075 1411 aa17.85■□□□□ 0.45
TRIM3-210ENST00000530724 DIEXFQ68CQ4 756 aaKnown RBP17.81■□□□□ 0.44
TRIM3-210ENST00000530724 TNIKQ9UKE5 1360 aa17.79■□□□□ 0.44
TRIM3-210ENST00000530724 CECR2Q9BXF3 1484 aa17.78■□□□□ 0.44
TRIM3-210ENST00000530724 CCER1Q8TC90 406 aaPredicted RBP17.78■□□□□ 0.44
TRIM3-210ENST00000530724 GTF3C3Q9Y5Q9 886 aa17.74■□□□□ 0.43
TRIM3-210ENST00000530724 CLSPNQ9HAW4 1339 aa17.71■□□□□ 0.42
TRIM3-210ENST00000530724 FAM9AQ8IZU1 332 aaPredicted RBP17.7■□□□□ 0.42
TRIM3-210ENST00000530724 TOP2AP11388 1531 aaKnown RBP17.69■□□□□ 0.42
TRIM3-210ENST00000530724 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.68■□□□□ 0.42
TRIM3-210ENST00000530724 CEP162Q5TB80 1403 aa17.68■□□□□ 0.42
TRIM3-210ENST00000530724 WIZO95785 1651 aa17.67■□□□□ 0.42
TRIM3-210ENST00000530724 ZNF316A6NFI3 1004 aaPredicted RBP17.67■□□□□ 0.42
TRIM3-210ENST00000530724 GOLGA3Q08378 1498 aa17.54■□□□□ 0.4
TRIM3-210ENST00000530724 CCDC88BA6NC98 1476 aa17.53■□□□□ 0.4
TRIM3-210ENST00000530724 SMARCA2P51531 1590 aa17.53■□□□□ 0.4
TRIM3-210ENST00000530724 KIF21BO75037 1637 aa17.47■□□□□ 0.39
TRIM3-210ENST00000530724 SMARCA4P51532 1647 aa17.47■□□□□ 0.39
TRIM3-210ENST00000530724 CSRNP3Q8WYN3 585 aa17.45■□□□□ 0.38
TRIM3-210ENST00000530724 BAZ1BQ9UIG0 1483 aaKnown RBP17.44■□□□□ 0.38
TRIM3-210ENST00000530724 CEP164Q9UPV0 1460 aa17.42■□□□□ 0.38
TRIM3-210ENST00000530724 SOGA1O94964 1423 aa17.4■□□□□ 0.38
TRIM3-210ENST00000530724 ABCC8Q09428 1581 aa17.38■□□□□ 0.37
TRIM3-210ENST00000530724 PEG3Q9GZU2 1588 aa17.36■□□□□ 0.37
TRIM3-210ENST00000530724 TTBK1Q5TCY1 1321 aaPredicted RBP17.36■□□□□ 0.37
TRIM3-210ENST00000530724 VPS8Q8N3P4 1428 aa17.35■□□□□ 0.37
TRIM3-210ENST00000530724 MIER1Q8N108 512 aa17.3■□□□□ 0.36
TRIM3-210ENST00000530724 CUX2O14529 1486 aa17.26■□□□□ 0.35
TRIM3-210ENST00000530724 CLIP1P30622 1438 aa17.25■□□□□ 0.35
TRIM3-210ENST00000530724 RUSC2Q8N2Y8 1516 aa17.22■□□□□ 0.35
TRIM3-210ENST00000530724 EHMT2Q96KQ7 1210 aa17.21■□□□□ 0.35
TRIM3-210ENST00000530724 UBTFP17480 764 aaKnown RBP17.15■□□□□ 0.34
TRIM3-210ENST00000530724 ERICH3Q5RHP9 1530 aa17.15■□□□□ 0.34
TRIM3-210ENST00000530724 DHX57Q6P158 1386 aaKnown RBP17.14■□□□□ 0.33
TRIM3-210ENST00000530724 RRBP1Q9P2E9 1410 aaKnown RBP17.12■□□□□ 0.33
TRIM3-210ENST00000530724 SYNJ1O43426 1573 aa17.11■□□□□ 0.33
TRIM3-210ENST00000530724 SUPT16HQ9Y5B9 1047 aaKnown RBP17.1■□□□□ 0.33
TRIM3-210ENST00000530724 PRXQ9BXM0 1461 aa17.05■□□□□ 0.32
TRIM3-210ENST00000530724 YTHDC1Q96MU7 727 aaKnown RBP17.04■□□□□ 0.32
TRIM3-210ENST00000530724 TOP2BQ02880 1626 aa17.02■□□□□ 0.31
TRIM3-210ENST00000530724 RAPGEF2Q9Y4G8 1499 aa17.01■□□□□ 0.31
TRIM3-210ENST00000530724 ANP32EQ9BTT0 268 aa17■□□□□ 0.31
TRIM3-210ENST00000530724 MAP3K1Q13233 1512 aa16.99■□□□□ 0.31
TRIM3-210ENST00000530724 APLP2Q06481 763 aa16.98■□□□□ 0.31
TRIM3-210ENST00000530724 HNRNPUL2Q1KMD3 747 aaKnown RBP16.98■□□□□ 0.31
TRIM3-210ENST00000530724 BIVM-ERCC5R4GMW8 1640 aa16.98■□□□□ 0.31
TRIM3-210ENST00000530724 UNC13AQ9UPW8 1703 aa16.97■□□□□ 0.31
TRIM3-210ENST00000530724 TSHZ2Q9NRE2 1034 aa16.97■□□□□ 0.31
TRIM3-210ENST00000530724 ARAP1Q96P48 1450 aa16.96■□□□□ 0.31
TRIM3-210ENST00000530724 BICRAQ9NZM4 1560 aa16.92■□□□□ 0.3
TRIM3-210ENST00000530724 TIMELESSQ9UNS1 1208 aa16.91■□□□□ 0.3
TRIM3-210ENST00000530724 ATAD2BQ9ULI0 1458 aa16.91■□□□□ 0.3
TRIM3-210ENST00000530724 CCNB3Q8WWL7 1395 aa16.85■□□□□ 0.29
TRIM3-210ENST00000530724 MAPKBP1O60336 1514 aa16.8■□□□□ 0.28
TRIM3-210ENST00000530724 CCER2I3L3R5 266 aa16.78■□□□□ 0.28
TRIM3-210ENST00000530724 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP16.76■□□□□ 0.27
TRIM3-210ENST00000530724 KIF27Q86VH2 1401 aa16.73■□□□□ 0.27
TRIM3-210ENST00000530724 ARHGAP35Q9NRY4 1499 aa16.72■□□□□ 0.27
TRIM3-210ENST00000530724 KANK4Q5T7N3 995 aaPredicted RBP16.7■□□□□ 0.26
TRIM3-210ENST00000530724 SETD5Q9C0A6 1442 aa16.7■□□□□ 0.26
TRIM3-210ENST00000530724 HMGXB3Q12766 1538 aa16.69■□□□□ 0.26
TRIM3-210ENST00000530724 PPP1R15AO75807 674 aaPredicted RBP16.68■□□□□ 0.26
TRIM3-210ENST00000530724 TIAM1Q13009 1591 aa16.68■□□□□ 0.26
TRIM3-210ENST00000530724 RAB3GAP2Q9H2M9 1393 aa16.67■□□□□ 0.26
TRIM3-210ENST00000530724 ERICH6BQ5W0A0 696 aa16.65■□□□□ 0.26
TRIM3-210ENST00000530724 BCL11AQ9H165 835 aa16.65■□□□□ 0.26
TRIM3-210ENST00000530724 CUX1P39880 1505 aa16.63■□□□□ 0.25
TRIM3-210ENST00000530724 NCAPD3P42695 1498 aa16.62■□□□□ 0.25
TRIM3-210ENST00000530724 MYT1LQ9UL68 1186 aa16.62■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 57.4 ms