RNA–Protein interactions for RNA: ENST00000523276.1

SHPRH-210, Transcript of SNF2 histone linker PHD RING helicase, humanhuman

TSL 2

Gene SHPRH, Length 2,030 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHPRH-210ENST00000523276 AEBP2Q6ZN18 517 aaPredicted RBP16.24■□□□□ 0.19
SHPRH-210ENST00000523276 CHIC1Q5VXU3 224 aa15.6■□□□□ 0.09
SHPRH-210ENST00000523276 NISCHQ9Y2I1 1504 aa14.41□□□□□ -0.1
SHPRH-210ENST00000523276 PHF23Q9BUL5 403 aaPredicted RBP13.77□□□□□ -0.21
SHPRH-210ENST00000523276 SENP3Q9H4L4 574 aaPredicted RBP13.69□□□□□ -0.22
SHPRH-210ENST00000523276 FOXD1Q16676 465 aa12.79□□□□□ -0.36
SHPRH-210ENST00000523276 PLPPR3Q6T4P5 718 aa12.53□□□□□ -0.4
SHPRH-210ENST00000523276 CCDC180Q9P1Z9 1646 aa12.39□□□□□ -0.43
SHPRH-210ENST00000523276 PPP6R1Q9UPN7 881 aa12.21□□□□□ -0.46
SHPRH-210ENST00000523276 ZCCHC6Q5VYS8 1495 aaKnown RBP12.18□□□□□ -0.46
SHPRH-210ENST00000523276 ADRA2BP18089 450 aa12.13□□□□□ -0.47
SHPRH-210ENST00000523276 POTEDQ86YR6 584 aa12.08□□□□□ -0.48
SHPRH-210ENST00000523276 SHROOM4Q9ULL8 1493 aa12□□□□□ -0.49
SHPRH-210ENST00000523276 PIAS4Q8N2W9 510 aaPredicted RBP11.96□□□□□ -0.49
SHPRH-210ENST00000523276 DCAF1Q9Y4B6 1507 aa11.91□□□□□ -0.5
SHPRH-210ENST00000523276 DCAF8L2P0C7V8 631 aa11.84□□□□□ -0.51
SHPRH-210ENST00000523276 MSH5O43196 834 aa11.79□□□□□ -0.52
SHPRH-210ENST00000523276 SUPT5HO00267 1087 aaKnown RBP11.67□□□□□ -0.54
SHPRH-210ENST00000523276 MYO15BQ96JP2 1530 aa11.65□□□□□ -0.54
SHPRH-210ENST00000523276 ABCC9O60706 1549 aa11.53□□□□□ -0.56
SHPRH-210ENST00000523276 EHMT2Q96KQ7 1210 aa11.51□□□□□ -0.57
SHPRH-210ENST00000523276 NACADO15069 1562 aa11.5□□□□□ -0.57
SHPRH-210ENST00000523276 SCRIBQ14160 1630 aa11.48□□□□□ -0.57
SHPRH-210ENST00000523276 RB1CC1Q8TDY2 1594 aa11.34□□□□□ -0.59
SHPRH-210ENST00000523276 RSF1Q96T23 1441 aaPredicted RBP11.31□□□□□ -0.6
SHPRH-210ENST00000523276 CECR2Q9BXF3 1484 aa11.2□□□□□ -0.62
SHPRH-210ENST00000523276 MROH2BQ7Z745 1585 aa11.16□□□□□ -0.62
SHPRH-210ENST00000523276 KCNA4P22459 653 aa11.11□□□□□ -0.63
SHPRH-210ENST00000523276 BAZ1AQ9NRL2 1556 aaPredicted RBP11.1□□□□□ -0.63
SHPRH-210ENST00000523276 MAPK8IP2Q13387 824 aaPredicted RBP11.08□□□□□ -0.64
SHPRH-210ENST00000523276 UNC13AQ9UPW8 1703 aa11.08□□□□□ -0.64
SHPRH-210ENST00000523276 WIZO95785 1651 aa11.06□□□□□ -0.64
SHPRH-210ENST00000523276 PPP4R3CPQ6ZMV5 832 aa11.03□□□□□ -0.64
SHPRH-210ENST00000523276 SMARCA4P51532 1647 aa11.01□□□□□ -0.65
SHPRH-210ENST00000523276 BICRAQ9NZM4 1560 aa11.01□□□□□ -0.65
SHPRH-210ENST00000523276 SCAF1Q9H7N4 1312 aaKnown RBP10.97□□□□□ -0.65
SHPRH-210ENST00000523276 TOP2AP11388 1531 aaKnown RBP10.97□□□□□ -0.65
SHPRH-210ENST00000523276 PABPN1Q86U42 306 aaKnown RBP eCLIP10.96□□□□□ -0.66
SHPRH-210ENST00000523276 TRIM41Q8WV44 630 aa10.94□□□□□ -0.66
SHPRH-210ENST00000523276 DMRT2Q9Y5R5 561 aa10.94□□□□□ -0.66
SHPRH-210ENST00000523276 SLC24A1O60721 1099 aa10.91□□□□□ -0.66
SHPRH-210ENST00000523276 EIF4G1Q04637 1599 aaKnown RBP10.9□□□□□ -0.66
SHPRH-210ENST00000523276 LOC105371045A0A1W2PR82 267 aa10.9□□□□□ -0.66
SHPRH-210ENST00000523276 CSRNP3Q8WYN3 585 aa10.9□□□□□ -0.66
SHPRH-210ENST00000523276 CCDC88BA6NC98 1476 aa10.87□□□□□ -0.67
SHPRH-210ENST00000523276 SMARCA2P51531 1590 aa10.87□□□□□ -0.67
SHPRH-210ENST00000523276 PEG3Q9GZU2 1588 aa10.86□□□□□ -0.67
SHPRH-210ENST00000523276 ATAD2BQ9ULI0 1458 aa10.78□□□□□ -0.68
SHPRH-210ENST00000523276 FAM9AQ8IZU1 332 aaPredicted RBP10.76□□□□□ -0.69
SHPRH-210ENST00000523276 CNKSR2Q8WXI2 1034 aa10.75□□□□□ -0.69
SHPRH-210ENST00000523276 BAZ1BQ9UIG0 1483 aaKnown RBP10.73□□□□□ -0.69
SHPRH-210ENST00000523276 ABCC8Q09428 1581 aa10.73□□□□□ -0.69
SHPRH-210ENST00000523276 PCGF6Q9BYE7 350 aa10.69□□□□□ -0.7
SHPRH-210ENST00000523276 HOXD11P31277 338 aaPredicted RBP10.65□□□□□ -0.7
SHPRH-210ENST00000523276 SLC4A1APQ9BWU0 796 aaKnown RBP10.65□□□□□ -0.7
SHPRH-210ENST00000523276 NCAPD3P42695 1498 aa10.63□□□□□ -0.71
SHPRH-210ENST00000523276 HMGXB3Q12766 1538 aa10.63□□□□□ -0.71
SHPRH-210ENST00000523276 WRNQ14191 1432 aaPredicted RBP eCLIP10.62□□□□□ -0.71
SHPRH-210ENST00000523276 HRCP23327 699 aa10.62□□□□□ -0.71
SHPRH-210ENST00000523276 EEA1Q15075 1411 aa10.61□□□□□ -0.71
SHPRH-210ENST00000523276 TRIM26Q12899 539 aaPredicted RBP10.61□□□□□ -0.71
SHPRH-210ENST00000523276 RNF216Q9NWF9 866 aaPredicted RBP10.61□□□□□ -0.71
SHPRH-210ENST00000523276 SOGA1O94964 1423 aa10.6□□□□□ -0.71
SHPRH-210ENST00000523276 NCBP3Q53F19 620 aaKnown RBP10.6□□□□□ -0.71
SHPRH-210ENST00000523276 NPM3O75607 178 aaKnown RBP10.57□□□□□ -0.72
SHPRH-210ENST00000523276 SYNJ1O43426 1573 aa10.57□□□□□ -0.72
SHPRH-210ENST00000523276 RTN4Q9NQC3 1192 aaKnown RBP10.54□□□□□ -0.72
SHPRH-210ENST00000523276 RUSC2Q8N2Y8 1516 aa10.54□□□□□ -0.72
SHPRH-210ENST00000523276 TNIKQ9UKE5 1360 aa10.51□□□□□ -0.73
SHPRH-210ENST00000523276 TOP2BQ02880 1626 aa10.49□□□□□ -0.73
SHPRH-210ENST00000523276 GOLGA3Q08378 1498 aa10.49□□□□□ -0.73
SHPRH-210ENST00000523276 CEP162Q5TB80 1403 aa10.48□□□□□ -0.73
SHPRH-210ENST00000523276 CFTRP13569 1480 aa10.48□□□□□ -0.73
SHPRH-210ENST00000523276 BIVM-ERCC5R4GMW8 1640 aa10.46□□□□□ -0.73
SHPRH-210ENST00000523276 CEP164Q9UPV0 1460 aa10.46□□□□□ -0.73
SHPRH-210ENST00000523276 KIF21BO75037 1637 aa10.45□□□□□ -0.74
SHPRH-210ENST00000523276 UBTFP17480 764 aaKnown RBP10.43□□□□□ -0.74
SHPRH-210ENST00000523276 CC2D2AQ9P2K1 1620 aa10.42□□□□□ -0.74
SHPRH-210ENST00000523276 CUX1P39880 1505 aa10.42□□□□□ -0.74
SHPRH-210ENST00000523276 CADPSQ9ULU8 1353 aa10.39□□□□□ -0.75
SHPRH-210ENST00000523276 PPARGC1BQ86YN6 1023 aaKnown RBP10.37□□□□□ -0.75
SHPRH-210ENST00000523276 RAPGEF2Q9Y4G8 1499 aa10.37□□□□□ -0.75
SHPRH-210ENST00000523276 PRDM2Q13029 1718 aa10.36□□□□□ -0.75
SHPRH-210ENST00000523276 DCAF8L1A6NGE4 600 aa10.36□□□□□ -0.75
SHPRH-210ENST00000523276 DNAJC5BQ9UF47 199 aa10.34□□□□□ -0.75
SHPRH-210ENST00000523276 PRXQ9BXM0 1461 aa10.34□□□□□ -0.75
SHPRH-210ENST00000523276 CLIP1P30622 1438 aa10.34□□□□□ -0.75
SHPRH-210ENST00000523276 ERICH3Q5RHP9 1530 aa10.33□□□□□ -0.76
SHPRH-210ENST00000523276 KIF27Q86VH2 1401 aa10.33□□□□□ -0.76
SHPRH-210ENST00000523276 ZEB1P37275 1124 aaPredicted RBP10.32□□□□□ -0.76
SHPRH-210ENST00000523276 AMER1Q5JTC6 1135 aaPredicted RBP10.32□□□□□ -0.76
SHPRH-210ENST00000523276 ZBTB22O15209 634 aa10.29□□□□□ -0.76
SHPRH-210ENST00000523276 VPS8Q8N3P4 1428 aa10.28□□□□□ -0.76
SHPRH-210ENST00000523276 FANCD2Q9BXW9 1451 aa10.28□□□□□ -0.76
SHPRH-210ENST00000523276 FGD5Q6ZNL6 1462 aa10.25□□□□□ -0.77
SHPRH-210ENST00000523276 CUX2O14529 1486 aa10.25□□□□□ -0.77
SHPRH-210ENST00000523276 TTBK1Q5TCY1 1321 aaPredicted RBP10.23□□□□□ -0.77
SHPRH-210ENST00000523276 IGF1RP08069 1367 aa10.22□□□□□ -0.77
SHPRH-210ENST00000523276 DNMBPQ6XZF7 1577 aa10.22□□□□□ -0.77
SHPRH-210ENST00000523276 NESP48681 1621 aa10.22□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms