RNA–Protein interactions for RNA: ENST00000513769.5

TPM3-221, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 539 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-221ENST00000513769 AEBP2Q6ZN18 517 aaPredicted RBP28.8■■■□□ 2.2
TPM3-221ENST00000513769 CHIC1Q5VXU3 224 aa27.53■■■□□ 2
TPM3-221ENST00000513769 SENP3Q9H4L4 574 aaPredicted RBP24.52■■□□□ 1.52
TPM3-221ENST00000513769 PHF23Q9BUL5 403 aaPredicted RBP24.24■■□□□ 1.47
TPM3-221ENST00000513769 FOXD1Q16676 465 aa22.84■■□□□ 1.25
TPM3-221ENST00000513769 NISCHQ9Y2I1 1504 aa22.26■■□□□ 1.15
TPM3-221ENST00000513769 PLPPR3Q6T4P5 718 aa22.08■■□□□ 1.13
TPM3-221ENST00000513769 PPP6R1Q9UPN7 881 aa21.5■■□□□ 1.03
TPM3-221ENST00000513769 ADRA2BP18089 450 aa21.45■■□□□ 1.02
TPM3-221ENST00000513769 PIAS4Q8N2W9 510 aaPredicted RBP21.41■■□□□ 1.02
TPM3-221ENST00000513769 MSH5O43196 834 aa21.3■■□□□ 1
TPM3-221ENST00000513769 POTEDQ86YR6 584 aa20.47■□□□□ 0.87
TPM3-221ENST00000513769 MAPK8IP2Q13387 824 aaPredicted RBP19.65■□□□□ 0.74
TPM3-221ENST00000513769 SCAF1Q9H7N4 1312 aaKnown RBP19.61■□□□□ 0.73
TPM3-221ENST00000513769 DMRT2Q9Y5R5 561 aa19.48■□□□□ 0.71
TPM3-221ENST00000513769 CCDC180Q9P1Z9 1646 aa19.4■□□□□ 0.7
TPM3-221ENST00000513769 PPP4R3CPQ6ZMV5 832 aa19.38■□□□□ 0.69
TPM3-221ENST00000513769 ABCC9O60706 1549 aa19.13■□□□□ 0.65
TPM3-221ENST00000513769 CNKSR2Q8WXI2 1034 aa18.97■□□□□ 0.63
TPM3-221ENST00000513769 HOXD11P31277 338 aaPredicted RBP18.83■□□□□ 0.6
TPM3-221ENST00000513769 RNF216Q9NWF9 866 aaPredicted RBP18.75■□□□□ 0.59
TPM3-221ENST00000513769 DCAF8L1A6NGE4 600 aa18.71■□□□□ 0.59
TPM3-221ENST00000513769 NCBP3Q53F19 620 aaKnown RBP18.69■□□□□ 0.58
TPM3-221ENST00000513769 ZCCHC6Q5VYS8 1495 aaKnown RBP18.63■□□□□ 0.57
TPM3-221ENST00000513769 DCAF1Q9Y4B6 1507 aa18.52■□□□□ 0.56
TPM3-221ENST00000513769 NPM3O75607 178 aaKnown RBP18.43■□□□□ 0.54
TPM3-221ENST00000513769 DCAF8L2P0C7V8 631 aa18.4■□□□□ 0.54
TPM3-221ENST00000513769 MYO15BQ96JP2 1530 aa18.38■□□□□ 0.53
TPM3-221ENST00000513769 KCNA4P22459 653 aa18.26■□□□□ 0.51
TPM3-221ENST00000513769 RNF39Q9H2S5 420 aa18.19■□□□□ 0.5
TPM3-221ENST00000513769 NACADO15069 1562 aa18.18■□□□□ 0.5
TPM3-221ENST00000513769 CACNB1Q02641 598 aaPredicted RBP18.17■□□□□ 0.5
TPM3-221ENST00000513769 DNAJC5BQ9UF47 199 aa18.17■□□□□ 0.5
TPM3-221ENST00000513769 RB1CC1Q8TDY2 1594 aa18.06■□□□□ 0.48
TPM3-221ENST00000513769 GRWD1Q9BQ67 446 aaKnown RBP eCLIP17.96■□□□□ 0.473e-9■■■■□ 20.6
TPM3-221ENST00000513769 C1QBPQ07021 282 aaKnown RBP17.93■□□□□ 0.46
TPM3-221ENST00000513769 SHROOM4Q9ULL8 1493 aa17.91■□□□□ 0.46
TPM3-221ENST00000513769 PABPN1Q86U42 306 aaKnown RBP eCLIP17.82■□□□□ 0.44
TPM3-221ENST00000513769 SCRIBQ14160 1630 aa17.65■□□□□ 0.42
TPM3-221ENST00000513769 U3KPZ7 1027 aaPredicted RBP17.61■□□□□ 0.41
TPM3-221ENST00000513769 UNC13AQ9UPW8 1703 aa17.56■□□□□ 0.4
TPM3-221ENST00000513769 SLC4A2P04920 1241 aa17.55■□□□□ 0.4
TPM3-221ENST00000513769 BICRAQ9NZM4 1560 aa17.49■□□□□ 0.39
TPM3-221ENST00000513769 SUPT5HO00267 1087 aaKnown RBP17.37■□□□□ 0.37
TPM3-221ENST00000513769 SPINK5Q9NQ38 1064 aaPredicted RBP17.3■□□□□ 0.36
TPM3-221ENST00000513769 CAPN15O75808 1086 aa17.27■□□□□ 0.36
TPM3-221ENST00000513769 SLC4A1APQ9BWU0 796 aaKnown RBP17.27■□□□□ 0.36
TPM3-221ENST00000513769 CECR2Q9BXF3 1484 aa17.24■□□□□ 0.35
TPM3-221ENST00000513769 RSF1Q96T23 1441 aaPredicted RBP17.24■□□□□ 0.35
TPM3-221ENST00000513769 CC2D2AQ9P2K1 1620 aa17.21■□□□□ 0.35
TPM3-221ENST00000513769 BAZ1AQ9NRL2 1556 aaPredicted RBP17.2■□□□□ 0.34
TPM3-221ENST00000513769 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP17.16■□□□□ 0.34
TPM3-221ENST00000513769 HNRNPUL2Q1KMD3 747 aaKnown RBP17.16■□□□□ 0.34
TPM3-221ENST00000513769 APLP2Q06481 763 aa17.12■□□□□ 0.33
TPM3-221ENST00000513769 EIF4G1Q04637 1599 aaKnown RBP17.11■□□□□ 0.33
TPM3-221ENST00000513769 MROH2BQ7Z745 1585 aa17.11■□□□□ 0.33
TPM3-221ENST00000513769 DSG3P32926 999 aa17.1■□□□□ 0.33
TPM3-221ENST00000513769 SAMD1Q6SPF0 538 aaPredicted RBP17.07■□□□□ 0.32
TPM3-221ENST00000513769 MYCNP04198 464 aaPredicted RBP17.04■□□□□ 0.32
TPM3-221ENST00000513769 TRHP20396 242 aaPredicted RBP17.04■□□□□ 0.32
TPM3-221ENST00000513769 SMARCA4P51532 1647 aa17.03■□□□□ 0.32
TPM3-221ENST00000513769 ZNF219Q9P2Y4 722 aaPredicted RBP17■□□□□ 0.31
TPM3-221ENST00000513769 FOXD4L1Q9NU39 408 aa16.97■□□□□ 0.31
TPM3-221ENST00000513769 PEG3Q9GZU2 1588 aa16.94■□□□□ 0.3
TPM3-221ENST00000513769 WIZO95785 1651 aa16.91■□□□□ 0.3
TPM3-221ENST00000513769 ABCB7O75027 752 aa16.9■□□□□ 0.3
TPM3-221ENST00000513769 DNAJC5Q9H3Z4 198 aa16.88■□□□□ 0.29
TPM3-221ENST00000513769 SMARCA2P51531 1590 aa16.87■□□□□ 0.29
TPM3-221ENST00000513769 ATAD2BQ9ULI0 1458 aa16.86■□□□□ 0.29
TPM3-221ENST00000513769 TOP2AP11388 1531 aaKnown RBP16.82■□□□□ 0.28
TPM3-221ENST00000513769 NCAPD3P42695 1498 aa16.82■□□□□ 0.28
TPM3-221ENST00000513769 ZBTB22O15209 634 aa16.79■□□□□ 0.28
TPM3-221ENST00000513769 BAZ1BQ9UIG0 1483 aaKnown RBP16.72■□□□□ 0.27
TPM3-221ENST00000513769 HMGXB3Q12766 1538 aa16.69■□□□□ 0.26
TPM3-221ENST00000513769 CCDC88BA6NC98 1476 aa16.68■□□□□ 0.26
TPM3-221ENST00000513769 ATF5Q9Y2D1 282 aaPredicted RBP16.64■□□□□ 0.25
TPM3-221ENST00000513769 POLA2Q14181 598 aa16.61■□□□□ 0.25
TPM3-221ENST00000513769 ERCC6Q03468 1493 aa16.55■□□□□ 0.24
TPM3-221ENST00000513769 CUX2O14529 1486 aa16.54■□□□□ 0.24
TPM3-221ENST00000513769 TRIM41Q8WV44 630 aa16.47■□□□□ 0.23
TPM3-221ENST00000513769 ATXN8OSP0DMR3 200 aa16.4■□□□□ 0.22
TPM3-221ENST00000513769 CFTRP13569 1480 aa16.37■□□□□ 0.21
TPM3-221ENST00000513769 CADPSQ9ULU8 1353 aa16.37■□□□□ 0.21
TPM3-221ENST00000513769 NESP48681 1621 aa16.34■□□□□ 0.21
TPM3-221ENST00000513769 RBM42Q9BTD8 480 aaKnown RBP16.31■□□□□ 0.2
TPM3-221ENST00000513769 ZBTB12Q9Y330 459 aaPredicted RBP16.28■□□□□ 0.2
TPM3-221ENST00000513769 WRNQ14191 1432 aaPredicted RBP eCLIP16.24■□□□□ 0.19
TPM3-221ENST00000513769 CSRNP3Q8WYN3 585 aa16.18■□□□□ 0.18
TPM3-221ENST00000513769 LAMC3Q9Y6N6 1575 aa16.17■□□□□ 0.18
TPM3-221ENST00000513769 ABCC8Q09428 1581 aa16.15■□□□□ 0.18
TPM3-221ENST00000513769 THOC2Q8NI27 1593 aaKnown RBP16.15■□□□□ 0.18
TPM3-221ENST00000513769 PDS5BQ9NTI5 1447 aa16.14■□□□□ 0.17
TPM3-221ENST00000513769 PRDM2Q13029 1718 aa16.14■□□□□ 0.17
TPM3-221ENST00000513769 EEA1Q15075 1411 aa16.11■□□□□ 0.17
TPM3-221ENST00000513769 EHMT2Q96KQ7 1210 aa16.11■□□□□ 0.17
TPM3-221ENST00000513769 OSCARQ8IYS5 282 aa16.09■□□□□ 0.17
TPM3-221ENST00000513769 POTEHQ6S545 545 aa16.08■□□□□ 0.16
TPM3-221ENST00000513769 FANCD2Q9BXW9 1451 aa16.08■□□□□ 0.16
TPM3-221ENST00000513769 TOP2BQ02880 1626 aa16.08■□□□□ 0.16
TPM3-221ENST00000513769 KIF21AQ7Z4S6 1674 aa16.07■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 62 ms