RNA–Protein interactions for RNA: ENST00000512303.1

TRIO-219, Transcript of trio Rho guanine nucleotide exchange factor, humanhuman

TSL 2

Gene TRIO, Length 586 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIO-219ENST00000512303 AEBP2Q6ZN18 517 aaPredicted RBP22.32■■□□□ 1.16
TRIO-219ENST00000512303 CHIC1Q5VXU3 224 aa21.96■■□□□ 1.11
TRIO-219ENST00000512303 PHF23Q9BUL5 403 aaPredicted RBP19.32■□□□□ 0.68
TRIO-219ENST00000512303 SENP3Q9H4L4 574 aaPredicted RBP18.94■□□□□ 0.62
TRIO-219ENST00000512303 PLPPR3Q6T4P5 718 aa17.91■□□□□ 0.46
TRIO-219ENST00000512303 FOXD1Q16676 465 aa17.55■□□□□ 0.4
TRIO-219ENST00000512303 PPP6R1Q9UPN7 881 aa17.01■□□□□ 0.31
TRIO-219ENST00000512303 ADRA2BP18089 450 aa17■□□□□ 0.31
TRIO-219ENST00000512303 NISCHQ9Y2I1 1504 aa16.81■□□□□ 0.28
TRIO-219ENST00000512303 PIAS4Q8N2W9 510 aaPredicted RBP16.58■□□□□ 0.24
TRIO-219ENST00000512303 MSH5O43196 834 aa16.14■□□□□ 0.17
TRIO-219ENST00000512303 PPP4R3CPQ6ZMV5 832 aa15.79■□□□□ 0.12
TRIO-219ENST00000512303 ABCC9O60706 1549 aa15.64■□□□□ 0.09
TRIO-219ENST00000512303 SCAF1Q9H7N4 1312 aaKnown RBP15.6■□□□□ 0.09
TRIO-219ENST00000512303 KCNA4P22459 653 aa15.56■□□□□ 0.08
TRIO-219ENST00000512303 NCBP3Q53F19 620 aaKnown RBP15.44■□□□□ 0.06
TRIO-219ENST00000512303 MAPK8IP2Q13387 824 aaPredicted RBP15.39■□□□□ 0.05
TRIO-219ENST00000512303 CNKSR2Q8WXI2 1034 aa15.33■□□□□ 0.04
TRIO-219ENST00000512303 CCDC180Q9P1Z9 1646 aa15.25■□□□□ 0.03
TRIO-219ENST00000512303 NPM3O75607 178 aaKnown RBP15.17■□□□□ 0.02
TRIO-219ENST00000512303 DMRT2Q9Y5R5 561 aa15.14■□□□□ 0.01
TRIO-219ENST00000512303 DNAJC5BQ9UF47 199 aa15□□□□□ -0.01
TRIO-219ENST00000512303 RNF216Q9NWF9 866 aaPredicted RBP14.99□□□□□ -0.01
TRIO-219ENST00000512303 HOXD11P31277 338 aaPredicted RBP14.89□□□□□ -0.03
TRIO-219ENST00000512303 SLC4A1APQ9BWU0 796 aaKnown RBP14.86□□□□□ -0.03
TRIO-219ENST00000512303 RB1CC1Q8TDY2 1594 aa14.8□□□□□ -0.04
TRIO-219ENST00000512303 NACADO15069 1562 aa14.62□□□□□ -0.07
TRIO-219ENST00000512303 EHMT2Q96KQ7 1210 aa14.57□□□□□ -0.08
TRIO-219ENST00000512303 PABPN1Q86U42 306 aaKnown RBP eCLIP14.5□□□□□ -0.09
TRIO-219ENST00000512303 DCAF8L1A6NGE4 600 aa14.48□□□□□ -0.09
TRIO-219ENST00000512303 POTEDQ86YR6 584 aa14.44□□□□□ -0.1
TRIO-219ENST00000512303 DCAF8L2P0C7V8 631 aa14.4□□□□□ -0.1
TRIO-219ENST00000512303 CSRNP3Q8WYN3 585 aa14.37□□□□□ -0.11
TRIO-219ENST00000512303 MYO15BQ96JP2 1530 aa14.35□□□□□ -0.11
TRIO-219ENST00000512303 ZBTB22O15209 634 aa14.3□□□□□ -0.12
TRIO-219ENST00000512303 SLC4A2P04920 1241 aa14.3□□□□□ -0.12
TRIO-219ENST00000512303 SHROOM4Q9ULL8 1493 aa14.3□□□□□ -0.12
TRIO-219ENST00000512303 DNAJC5Q9H3Z4 198 aa14.29□□□□□ -0.12
TRIO-219ENST00000512303 FOXD4L1Q9NU39 408 aa14.29□□□□□ -0.12
TRIO-219ENST00000512303 BICRAQ9NZM4 1560 aa14.22□□□□□ -0.13
TRIO-219ENST00000512303 CECR2Q9BXF3 1484 aa14.22□□□□□ -0.13
TRIO-219ENST00000512303 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.2□□□□□ -0.144e-7■■□□□ 11.6
TRIO-219ENST00000512303 UNC13AQ9UPW8 1703 aa14.15□□□□□ -0.14
TRIO-219ENST00000512303 CC2D2AQ9P2K1 1620 aa14.09□□□□□ -0.15
TRIO-219ENST00000512303 MYCNP04198 464 aaPredicted RBP14.02□□□□□ -0.17
TRIO-219ENST00000512303 EIF4G1Q04637 1599 aaKnown RBP14□□□□□ -0.17
TRIO-219ENST00000512303 DCAF1Q9Y4B6 1507 aa13.96□□□□□ -0.17
TRIO-219ENST00000512303 U3KPZ7 1027 aaPredicted RBP13.96□□□□□ -0.17
TRIO-219ENST00000512303 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP13.87□□□□□ -0.19
TRIO-219ENST00000512303 HNRNPUL2Q1KMD3 747 aaKnown RBP13.87□□□□□ -0.19
TRIO-219ENST00000512303 RNF39Q9H2S5 420 aa13.84□□□□□ -0.19
TRIO-219ENST00000512303 ZCCHC6Q5VYS8 1495 aaKnown RBP13.84□□□□□ -0.19
TRIO-219ENST00000512303 SCRIBQ14160 1630 aa13.82□□□□□ -0.2
TRIO-219ENST00000512303 CUX2O14529 1486 aa13.81□□□□□ -0.2
TRIO-219ENST00000512303 ATXN8OSP0DMR3 200 aa13.81□□□□□ -0.2
TRIO-219ENST00000512303 SAMD1Q6SPF0 538 aaPredicted RBP13.81□□□□□ -0.2
TRIO-219ENST00000512303 C1QBPQ07021 282 aaKnown RBP13.7□□□□□ -0.22
TRIO-219ENST00000512303 APLP2Q06481 763 aa13.69□□□□□ -0.22
TRIO-219ENST00000512303 ERCC6Q03468 1493 aa13.66□□□□□ -0.22
TRIO-219ENST00000512303 ATF5Q9Y2D1 282 aaPredicted RBP13.63□□□□□ -0.23
TRIO-219ENST00000512303 SPINK5Q9NQ38 1064 aaPredicted RBP13.53□□□□□ -0.24
TRIO-219ENST00000512303 NCAPD3P42695 1498 aa13.51□□□□□ -0.25
TRIO-219ENST00000512303 CAPN15O75808 1086 aa13.48□□□□□ -0.25
TRIO-219ENST00000512303 ZNF219Q9P2Y4 722 aaPredicted RBP13.46□□□□□ -0.25
TRIO-219ENST00000512303 TRHP20396 242 aaPredicted RBP13.45□□□□□ -0.26
TRIO-219ENST00000512303 TRIM41Q8WV44 630 aa13.4□□□□□ -0.26
TRIO-219ENST00000512303 CACNB1Q02641 598 aaPredicted RBP13.39□□□□□ -0.27
TRIO-219ENST00000512303 ATAD2BQ9ULI0 1458 aa13.35□□□□□ -0.27
TRIO-219ENST00000512303 HMGXB3Q12766 1538 aa13.34□□□□□ -0.27
TRIO-219ENST00000512303 SMARCA2P51531 1590 aa13.34□□□□□ -0.27
TRIO-219ENST00000512303 POLA2Q14181 598 aa13.28□□□□□ -0.28
TRIO-219ENST00000512303 PDS5BQ9NTI5 1447 aa13.28□□□□□ -0.28
TRIO-219ENST00000512303 NESP48681 1621 aa13.25□□□□□ -0.29
TRIO-219ENST00000512303 LAMC3Q9Y6N6 1575 aa13.25□□□□□ -0.29
TRIO-219ENST00000512303 THOC2Q8NI27 1593 aaKnown RBP13.23□□□□□ -0.29
TRIO-219ENST00000512303 BAZ1BQ9UIG0 1483 aaKnown RBP13.23□□□□□ -0.29
TRIO-219ENST00000512303 ABCB7O75027 752 aa13.22□□□□□ -0.29
TRIO-219ENST00000512303 DSG3P32926 999 aa13.22□□□□□ -0.29
TRIO-219ENST00000512303 SMARCA4P51532 1647 aa13.15□□□□□ -0.3
TRIO-219ENST00000512303 OSCARQ8IYS5 282 aa13.15□□□□□ -0.3
TRIO-219ENST00000512303 BAZ1AQ9NRL2 1556 aaPredicted RBP13.13□□□□□ -0.31
TRIO-219ENST00000512303 PEG3Q9GZU2 1588 aa13.11□□□□□ -0.31
TRIO-219ENST00000512303 MRC2Q9UBG0 1479 aa13.1□□□□□ -0.31
TRIO-219ENST00000512303 CADPSQ9ULU8 1353 aa13.09□□□□□ -0.31
TRIO-219ENST00000512303 FBLN2P98095 1184 aa13.08□□□□□ -0.32
TRIO-219ENST00000512303 ZBTB12Q9Y330 459 aaPredicted RBP13.06□□□□□ -0.32
TRIO-219ENST00000512303 WDR62O43379 1518 aa13.04□□□□□ -0.32
TRIO-219ENST00000512303 MKRN4PQ13434 485 aaPredicted RBP13.04□□□□□ -0.32
TRIO-219ENST00000512303 KIF21AQ7Z4S6 1674 aa13□□□□□ -0.33
TRIO-219ENST00000512303 FKBP8Q14318 412 aa12.98□□□□□ -0.33
TRIO-219ENST00000512303 CEP164Q9UPV0 1460 aa12.97□□□□□ -0.33
TRIO-219ENST00000512303 FANCD2Q9BXW9 1451 aa12.89□□□□□ -0.35
TRIO-219ENST00000512303 MROH2BQ7Z745 1585 aa12.86□□□□□ -0.35
TRIO-219ENST00000512303 SPDYE4A6NLX3 237 aa12.84□□□□□ -0.35
TRIO-219ENST00000512303 CFTRP13569 1480 aa12.82□□□□□ -0.36
TRIO-219ENST00000512303 RIMBP3CA6NJZ7 1639 aa12.8□□□□□ -0.36
TRIO-219ENST00000512303 RIMBP3BA6NNM3 1639 aa12.8□□□□□ -0.36
TRIO-219ENST00000512303 RIMBP3Q9UFD9 1639 aa12.8□□□□□ -0.36
TRIO-219ENST00000512303 ARHGEF11O15085 1522 aa12.8□□□□□ -0.36
TRIO-219ENST00000512303 CYB5RLQ6IPT4 315 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms