RNA–Protein interactions for RNA: ENST00000511467.1

PTPN13-209, Transcript of protein tyrosine phosphatase, non-receptor type 13, humanhuman

APPRIS P4 TSL 2 BASIC

Gene PTPN13, Length 8,076 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN13-209ENST00000511467 NISCHQ9Y2I1 1504 aa8.97□□□□□ -0.97
PTPN13-209ENST00000511467 CCDC180Q9P1Z9 1646 aa8.35□□□□□ -1.07
PTPN13-209ENST00000511467 FAM9AQ8IZU1 332 aaPredicted RBP8.11□□□□□ -1.11
PTPN13-209ENST00000511467 PELP1Q8IZL8 1130 aaKnown RBP7.84□□□□□ -1.15
PTPN13-209ENST00000511467 DCAF8L2P0C7V8 631 aa7.78□□□□□ -1.16
PTPN13-209ENST00000511467 NACADO15069 1562 aa7.69□□□□□ -1.18
PTPN13-209ENST00000511467 DCAF1Q9Y4B6 1507 aa7.68□□□□□ -1.18
PTPN13-209ENST00000511467 APLP2Q06481 763 aa7.67□□□□□ -1.18
PTPN13-209ENST00000511467 RB1CC1Q8TDY2 1594 aa7.65□□□□□ -1.19
PTPN13-209ENST00000511467 MYO15BQ96JP2 1530 aa7.64□□□□□ -1.19
PTPN13-209ENST00000511467 ZEB1P37275 1124 aaPredicted RBP7.64□□□□□ -1.19
PTPN13-209ENST00000511467 ACIN1Q9UKV3 1341 aaKnown RBP7.61□□□□□ -1.19
PTPN13-209ENST00000511467 SHROOM4Q9ULL8 1493 aa7.49□□□□□ -1.21
PTPN13-209ENST00000511467 ZCCHC6Q5VYS8 1495 aaKnown RBP7.47□□□□□ -1.21
PTPN13-209ENST00000511467 CCER1Q8TC90 406 aaPredicted RBP7.44□□□□□ -1.22
PTPN13-209ENST00000511467 MYT1Q01538 1121 aa7.42□□□□□ -1.22
PTPN13-209ENST00000511467 SUPT5HO00267 1087 aaKnown RBP7.35□□□□□ -1.23
PTPN13-209ENST00000511467 EEA1Q15075 1411 aa7.31□□□□□ -1.24
PTPN13-209ENST00000511467 BAZ1AQ9NRL2 1556 aaPredicted RBP7.3□□□□□ -1.24
PTPN13-209ENST00000511467 SMARCA2P51531 1590 aa7.28□□□□□ -1.24
PTPN13-209ENST00000511467 TRIM41Q8WV44 630 aa7.27□□□□□ -1.24
PTPN13-209ENST00000511467 YTHDC1Q96MU7 727 aaKnown RBP7.27□□□□□ -1.25
PTPN13-209ENST00000511467 CENPBP07199 599 aaPredicted RBP7.26□□□□□ -1.25
PTPN13-209ENST00000511467 PRDM2Q13029 1718 aa7.26□□□□□ -1.25
PTPN13-209ENST00000511467 BAZ1BQ9UIG0 1483 aaKnown RBP7.26□□□□□ -1.25
PTPN13-209ENST00000511467 SCRIBQ14160 1630 aa7.21□□□□□ -1.26
PTPN13-209ENST00000511467 CLSPNQ9HAW4 1339 aa7.2□□□□□ -1.26
PTPN13-209ENST00000511467 ABCC9O60706 1549 aa7.18□□□□□ -1.26
PTPN13-209ENST00000511467 ABCC8Q09428 1581 aa7.15□□□□□ -1.26
PTPN13-209ENST00000511467 SLC24A1O60721 1099 aa7.12□□□□□ -1.27
PTPN13-209ENST00000511467 CDK11AQ9UQ88 783 aaPredicted RBP7.11□□□□□ -1.27
PTPN13-209ENST00000511467 UBTFP17480 764 aaKnown RBP7.11□□□□□ -1.27
PTPN13-209ENST00000511467 KAT6BQ8WYB5 2073 aa7.1□□□□□ -1.27
PTPN13-209ENST00000511467 NEFLP07196 543 aa7.1□□□□□ -1.27
PTPN13-209ENST00000511467 NEFMP07197 916 aa7.09□□□□□ -1.28
PTPN13-209ENST00000511467 TRIM26Q12899 539 aaPredicted RBP7.09□□□□□ -1.28
PTPN13-209ENST00000511467 UNC13AQ9UPW8 1703 aa7.06□□□□□ -1.28
PTPN13-209ENST00000511467 CEP162Q5TB80 1403 aa7.04□□□□□ -1.28
PTPN13-209ENST00000511467 EIF5BO60841 1220 aaKnown RBP7.04□□□□□ -1.28
PTPN13-209ENST00000511467 SCAF1Q9H7N4 1312 aaKnown RBP7.02□□□□□ -1.29
PTPN13-209ENST00000511467 RSF1Q96T23 1441 aaPredicted RBP7.02□□□□□ -1.29
PTPN13-209ENST00000511467 SMARCA4P51532 1647 aa7□□□□□ -1.29
PTPN13-209ENST00000511467 KIF21AQ7Z4S6 1674 aa7□□□□□ -1.29
PTPN13-209ENST00000511467 FHAD1B1AJZ9 1412 aa6.99□□□□□ -1.29
PTPN13-209ENST00000511467 TOP2AP11388 1531 aaKnown RBP6.99□□□□□ -1.29
PTPN13-209ENST00000511467 CEP164Q9UPV0 1460 aa6.95□□□□□ -1.3
PTPN13-209ENST00000511467 KIF27Q86VH2 1401 aa6.94□□□□□ -1.3
PTPN13-209ENST00000511467 WDR97A6NE52 1622 aa6.93□□□□□ -1.3
PTPN13-209ENST00000511467 GOLGA3Q08378 1498 aa6.93□□□□□ -1.3
PTPN13-209ENST00000511467 HMGXB3Q12766 1538 aa6.92□□□□□ -1.3
PTPN13-209ENST00000511467 ERICH6Q7L0X2 663 aa6.91□□□□□ -1.3
PTPN13-209ENST00000511467 PDS5BQ9NTI5 1447 aa6.91□□□□□ -1.3
PTPN13-209ENST00000511467 CUL7Q14999 1698 aa6.9□□□□□ -1.3
PTPN13-209ENST00000511467 WRNQ14191 1432 aaPredicted RBP eCLIP6.88□□□□□ -1.31
PTPN13-209ENST00000511467 MYT1LQ9UL68 1186 aa6.88□□□□□ -1.31
PTPN13-209ENST00000511467 DAXXQ9UER7 740 aaPredicted RBP6.88□□□□□ -1.31
PTPN13-209ENST00000511467 CLIP1P30622 1438 aa6.88□□□□□ -1.31
PTPN13-209ENST00000511467 ARID4BQ4LE39 1312 aaPredicted RBP6.88□□□□□ -1.31
PTPN13-209ENST00000511467 PEG3Q9GZU2 1588 aa6.84□□□□□ -1.31
PTPN13-209ENST00000511467 CC2D2AQ9P2K1 1620 aa6.84□□□□□ -1.31
PTPN13-209ENST00000511467 ANO8Q9HCE9 1232 aaPredicted RBP6.84□□□□□ -1.31
PTPN13-209ENST00000511467 NPM1P06748 294 aaKnown RBP eCLIP6.83□□□□□ -1.32
PTPN13-209ENST00000511467 LAMC3Q9Y6N6 1575 aa6.83□□□□□ -1.32
PTPN13-209ENST00000511467 TIMELESSQ9UNS1 1208 aa6.82□□□□□ -1.32
PTPN13-209ENST00000511467 FMN1Q68DA7 1419 aa6.82□□□□□ -1.32
PTPN13-209ENST00000511467 ATP1B4Q9UN42 357 aaPredicted RBP6.81□□□□□ -1.32
PTPN13-209ENST00000511467 KIF21BO75037 1637 aa6.81□□□□□ -1.32
PTPN13-209ENST00000511467 CHIC1Q5VXU3 224 aa6.81□□□□□ -1.32
PTPN13-209ENST00000511467 CUX1P39880 1505 aa6.81□□□□□ -1.32
PTPN13-209ENST00000511467 CSRNP3Q8WYN3 585 aa6.81□□□□□ -1.32
PTPN13-209ENST00000511467 ERICH3Q5RHP9 1530 aa6.81□□□□□ -1.32
PTPN13-209ENST00000511467 CARMIL2Q6F5E8 1435 aa6.8□□□□□ -1.32
PTPN13-209ENST00000511467 ERCC6Q03468 1493 aa6.8□□□□□ -1.32
PTPN13-209ENST00000511467 CTTNBP2Q8WZ74 1663 aa6.8□□□□□ -1.32
PTPN13-209ENST00000511467 CDCA8Q53HL2 280 aa6.8□□□□□ -1.32
PTPN13-209ENST00000511467 CHMP4AQ9BY43 222 aa6.79□□□□□ -1.32
PTPN13-209ENST00000511467 TTBK1Q5TCY1 1321 aaPredicted RBP6.79□□□□□ -1.32
PTPN13-209ENST00000511467 EFCAB5A4FU69 1503 aa6.79□□□□□ -1.32
PTPN13-209ENST00000511467 RSPH4AQ5TD94 716 aa6.78□□□□□ -1.32
PTPN13-209ENST00000511467 PCGF6Q9BYE7 350 aa6.77□□□□□ -1.33
PTPN13-209ENST00000511467 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP6.77□□□□□ -1.33
PTPN13-209ENST00000511467 HNRNPUL2Q1KMD3 747 aaKnown RBP6.77□□□□□ -1.33
PTPN13-209ENST00000511467 ITSN2Q9NZM3 1697 aa6.77□□□□□ -1.33
PTPN13-209ENST00000511467 ZBTB47Q9UFB7 747 aaPredicted RBP6.77□□□□□ -1.33
PTPN13-209ENST00000511467 CCDC18Q5T9S5 1454 aa6.77□□□□□ -1.33
PTPN13-209ENST00000511467 WIZO95785 1651 aa6.76□□□□□ -1.33
PTPN13-209ENST00000511467 CHMP4BQ9H444 224 aaKnown RBP6.76□□□□□ -1.33
PTPN13-209ENST00000511467 CFAP44Q96MT7 982 aa6.76□□□□□ -1.33
PTPN13-209ENST00000511467 TNIKQ9UKE5 1360 aa6.76□□□□□ -1.33
PTPN13-209ENST00000511467 ESF1Q9H501 851 aaKnown RBP6.75□□□□□ -1.33
PTPN13-209ENST00000511467 SUPT6HQ7KZ85 1726 aaKnown RBP6.75□□□□□ -1.33
PTPN13-209ENST00000511467 AEBP2Q6ZN18 517 aaPredicted RBP6.74□□□□□ -1.33
PTPN13-209ENST00000511467 HDGFP51858 240 aaKnown RBP6.73□□□□□ -1.33
PTPN13-209ENST00000511467 SCAPERQ9BY12 1400 aa6.73□□□□□ -1.33
PTPN13-209ENST00000511467 STAC3Q96MF2 364 aa6.72□□□□□ -1.33
PTPN13-209ENST00000511467 HAP1P54257 671 aaPredicted RBP6.72□□□□□ -1.33
PTPN13-209ENST00000511467 HMGB2P26583 209 aaKnown RBP6.72□□□□□ -1.33
PTPN13-209ENST00000511467 MTUS2Q5JR59 1369 aa6.72□□□□□ -1.33
PTPN13-209ENST00000511467 ANP32EQ9BTT0 268 aa6.71□□□□□ -1.33
PTPN13-209ENST00000511467 PNNQ9H307 717 aaKnown RBP6.71□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 11.7 ms