RNA–Protein interactions for RNA: ENST00000511153.5

PROM1-211, Transcript of prominin 1, humanhuman

TSL 1 (best)

Gene PROM1, Length 1,595 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PROM1-211ENST00000511153 AEBP2Q6ZN18 517 aaPredicted RBP14.71□□□□□ -0.05
PROM1-211ENST00000511153 CHIC1Q5VXU3 224 aa14.39□□□□□ -0.11
PROM1-211ENST00000511153 PHF23Q9BUL5 403 aaPredicted RBP12.77□□□□□ -0.37
PROM1-211ENST00000511153 NISCHQ9Y2I1 1504 aa12.71□□□□□ -0.37
PROM1-211ENST00000511153 SENP3Q9H4L4 574 aaPredicted RBP12.3□□□□□ -0.44
PROM1-211ENST00000511153 POTEDQ86YR6 584 aa11.84□□□□□ -0.51
PROM1-211ENST00000511153 PLPPR3Q6T4P5 718 aa11.69□□□□□ -0.54
PROM1-211ENST00000511153 FOXD1Q16676 465 aa11.51□□□□□ -0.57
PROM1-211ENST00000511153 PPP6R1Q9UPN7 881 aa11.25□□□□□ -0.61
PROM1-211ENST00000511153 ADRA2BP18089 450 aa11.23□□□□□ -0.61
PROM1-211ENST00000511153 CCDC180Q9P1Z9 1646 aa11.17□□□□□ -0.62
PROM1-211ENST00000511153 ABCC9O60706 1549 aa10.98□□□□□ -0.65
PROM1-211ENST00000511153 PIAS4Q8N2W9 510 aaPredicted RBP10.85□□□□□ -0.67
PROM1-211ENST00000511153 DCAF8L2P0C7V8 631 aa10.8□□□□□ -0.68
PROM1-211ENST00000511153 ZCCHC6Q5VYS8 1495 aaKnown RBP10.61□□□□□ -0.71
PROM1-211ENST00000511153 RB1CC1Q8TDY2 1594 aa10.49□□□□□ -0.73
PROM1-211ENST00000511153 NACADO15069 1562 aa10.47□□□□□ -0.73
PROM1-211ENST00000511153 MSH5O43196 834 aa10.42□□□□□ -0.74
PROM1-211ENST00000511153 DCAF1Q9Y4B6 1507 aa10.4□□□□□ -0.74
PROM1-211ENST00000511153 PPP4R3CPQ6ZMV5 832 aa10.39□□□□□ -0.75
PROM1-211ENST00000511153 SCRIBQ14160 1630 aa10.38□□□□□ -0.75
PROM1-211ENST00000511153 SHROOM4Q9ULL8 1493 aa10.38□□□□□ -0.75
PROM1-211ENST00000511153 KCNA4P22459 653 aa10.35□□□□□ -0.75
PROM1-211ENST00000511153 MYO15BQ96JP2 1530 aa10.35□□□□□ -0.75
PROM1-211ENST00000511153 PABPN1Q86U42 306 aaKnown RBP eCLIP10.35□□□□□ -0.75
PROM1-211ENST00000511153 UNC13AQ9UPW8 1703 aa10.33□□□□□ -0.76
PROM1-211ENST00000511153 BICRAQ9NZM4 1560 aa10.2□□□□□ -0.78
PROM1-211ENST00000511153 MAPK8IP2Q13387 824 aaPredicted RBP10.19□□□□□ -0.78
PROM1-211ENST00000511153 SCAF1Q9H7N4 1312 aaKnown RBP10.07□□□□□ -0.8
PROM1-211ENST00000511153 NCBP3Q53F19 620 aaKnown RBP10.04□□□□□ -0.8
PROM1-211ENST00000511153 DNAJC5BQ9UF47 199 aa10.04□□□□□ -0.8
PROM1-211ENST00000511153 NPM3O75607 178 aaKnown RBP10.02□□□□□ -0.81
PROM1-211ENST00000511153 CNKSR2Q8WXI2 1034 aa10□□□□□ -0.81
PROM1-211ENST00000511153 CECR2Q9BXF3 1484 aa9.98□□□□□ -0.81
PROM1-211ENST00000511153 EIF4G1Q04637 1599 aaKnown RBP9.92□□□□□ -0.82
PROM1-211ENST00000511153 CC2D2AQ9P2K1 1620 aa9.88□□□□□ -0.83
PROM1-211ENST00000511153 MROH2BQ7Z745 1585 aa9.87□□□□□ -0.83
PROM1-211ENST00000511153 DMRT2Q9Y5R5 561 aa9.87□□□□□ -0.83
PROM1-211ENST00000511153 SMARCA4P51532 1647 aa9.85□□□□□ -0.83
PROM1-211ENST00000511153 SUPT5HO00267 1087 aaKnown RBP9.82□□□□□ -0.84
PROM1-211ENST00000511153 SLC4A1APQ9BWU0 796 aaKnown RBP9.82□□□□□ -0.84
PROM1-211ENST00000511153 BAZ1AQ9NRL2 1556 aaPredicted RBP9.82□□□□□ -0.84
PROM1-211ENST00000511153 WIZO95785 1651 aa9.8□□□□□ -0.84
PROM1-211ENST00000511153 EHMT2Q96KQ7 1210 aa9.79□□□□□ -0.84
PROM1-211ENST00000511153 RSF1Q96T23 1441 aaPredicted RBP9.78□□□□□ -0.84
PROM1-211ENST00000511153 RNF216Q9NWF9 866 aaPredicted RBP9.77□□□□□ -0.85
PROM1-211ENST00000511153 ATAD2BQ9ULI0 1458 aa9.75□□□□□ -0.85
PROM1-211ENST00000511153 HOXD11P31277 338 aaPredicted RBP9.71□□□□□ -0.86
PROM1-211ENST00000511153 SMARCA2P51531 1590 aa9.7□□□□□ -0.86
PROM1-211ENST00000511153 BAZ1BQ9UIG0 1483 aaKnown RBP9.7□□□□□ -0.86
PROM1-211ENST00000511153 DNAJC5Q9H3Z4 198 aa9.68□□□□□ -0.86
PROM1-211ENST00000511153 NCAPD3P42695 1498 aa9.66□□□□□ -0.86
PROM1-211ENST00000511153 PEG3Q9GZU2 1588 aa9.65□□□□□ -0.87
PROM1-211ENST00000511153 HMGXB3Q12766 1538 aa9.62□□□□□ -0.87
PROM1-211ENST00000511153 TOP2AP11388 1531 aaKnown RBP9.61□□□□□ -0.87
PROM1-211ENST00000511153 CSRNP3Q8WYN3 585 aa9.59□□□□□ -0.87
PROM1-211ENST00000511153 ZBTB22O15209 634 aa9.58□□□□□ -0.88
PROM1-211ENST00000511153 NESP48681 1621 aa9.55□□□□□ -0.88
PROM1-211ENST00000511153 CCDC88BA6NC98 1476 aa9.55□□□□□ -0.88
PROM1-211ENST00000511153 DCAF8L1A6NGE4 600 aa9.5□□□□□ -0.89
PROM1-211ENST00000511153 SLC4A2P04920 1241 aa9.46□□□□□ -0.89
PROM1-211ENST00000511153 CADPSQ9ULU8 1353 aa9.44□□□□□ -0.9
PROM1-211ENST00000511153 ERCC6Q03468 1493 aa9.42□□□□□ -0.9
PROM1-211ENST00000511153 KIF21AQ7Z4S6 1674 aa9.41□□□□□ -0.9
PROM1-211ENST00000511153 FOXD4L1Q9NU39 408 aa9.4□□□□□ -0.9
PROM1-211ENST00000511153 LAMC3Q9Y6N6 1575 aa9.4□□□□□ -0.91
PROM1-211ENST00000511153 CFTRP13569 1480 aa9.39□□□□□ -0.91
PROM1-211ENST00000511153 FANCD2Q9BXW9 1451 aa9.37□□□□□ -0.91
PROM1-211ENST00000511153 PDS5BQ9NTI5 1447 aa9.35□□□□□ -0.91
PROM1-211ENST00000511153 PRDM2Q13029 1718 aa9.34□□□□□ -0.91
PROM1-211ENST00000511153 CEP164Q9UPV0 1460 aa9.33□□□□□ -0.92
PROM1-211ENST00000511153 ABCC8Q09428 1581 aa9.33□□□□□ -0.92
PROM1-211ENST00000511153 URB2Q14146 1524 aaKnown RBP9.28□□□□□ -0.92
PROM1-211ENST00000511153 GRWD1Q9BQ67 446 aaKnown RBP eCLIP9.28□□□□□ -0.92
PROM1-211ENST00000511153 THOC2Q8NI27 1593 aaKnown RBP9.27□□□□□ -0.93
PROM1-211ENST00000511153 MRC2Q9UBG0 1479 aa9.27□□□□□ -0.93
PROM1-211ENST00000511153 CUX1P39880 1505 aa9.24□□□□□ -0.93
PROM1-211ENST00000511153 TOPBP1Q92547 1522 aa9.23□□□□□ -0.93
PROM1-211ENST00000511153 SYNJ1O43426 1573 aa9.23□□□□□ -0.93
PROM1-211ENST00000511153 WRNQ14191 1432 aaPredicted RBP eCLIP9.21□□□□□ -0.93
PROM1-211ENST00000511153 WDR62O43379 1518 aa9.2□□□□□ -0.94
PROM1-211ENST00000511153 DNMBPQ6XZF7 1577 aa9.2□□□□□ -0.94
PROM1-211ENST00000511153 RAD54L2Q9Y4B4 1467 aa9.19□□□□□ -0.94
PROM1-211ENST00000511153 FGD5Q6ZNL6 1462 aa9.19□□□□□ -0.94
PROM1-211ENST00000511153 U3KPZ7 1027 aaPredicted RBP9.18□□□□□ -0.94
PROM1-211ENST00000511153 MYCNP04198 464 aaPredicted RBP9.17□□□□□ -0.94
PROM1-211ENST00000511153 TRIM41Q8WV44 630 aa9.17□□□□□ -0.94
PROM1-211ENST00000511153 POLA1P09884 1462 aaPredicted RBP9.16□□□□□ -0.94
PROM1-211ENST00000511153 CUX2O14529 1486 aa9.15□□□□□ -0.94
PROM1-211ENST00000511153 TOP2BQ02880 1626 aa9.15□□□□□ -0.95
PROM1-211ENST00000511153 ZNF608Q9ULD9 1512 aaPredicted RBP9.14□□□□□ -0.95
PROM1-211ENST00000511153 SOGA1O94964 1423 aa9.14□□□□□ -0.95
PROM1-211ENST00000511153 BIVM-ERCC5R4GMW8 1640 aa9.14□□□□□ -0.95
PROM1-211ENST00000511153 TDRD9Q8NDG6 1382 aaKnown RBP9.13□□□□□ -0.95
PROM1-211ENST00000511153 FAM9AQ8IZU1 332 aaPredicted RBP9.12□□□□□ -0.95
PROM1-211ENST00000511153 AQRO60306 1485 aaKnown RBP eCLIP9.11□□□□□ -0.95
PROM1-211ENST00000511153 CACNB1Q02641 598 aaPredicted RBP9.1□□□□□ -0.95
PROM1-211ENST00000511153 TARBP1Q13395 1621 aaKnown RBP9.1□□□□□ -0.95
PROM1-211ENST00000511153 ATF5Q9Y2D1 282 aaPredicted RBP9.09□□□□□ -0.95
PROM1-211ENST00000511153 IFT140Q96RY7 1462 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms