RNA–Protein interactions for RNA: ENST00000504157.5

POLR2J3-209, Transcript of RNA polymerase II subunit J3, humanhuman

TSL 2

Gene POLR2J3, Length 2,211 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-209ENST00000504157 NISCHQ9Y2I1 1504 aa34.37■■■■□ 3.09
POLR2J3-209ENST00000504157 HRCP23327 699 aa30.27■■■□□ 2.44
POLR2J3-209ENST00000504157 CCDC180Q9P1Z9 1646 aa29.94■■■□□ 2.38
POLR2J3-209ENST00000504157 PELP1Q8IZL8 1130 aaKnown RBP29.92■■■□□ 2.38
POLR2J3-209ENST00000504157 SHROOM4Q9ULL8 1493 aa29.63■■■□□ 2.33
POLR2J3-209ENST00000504157 SUPT5HO00267 1087 aaKnown RBP29.45■■■□□ 2.31
POLR2J3-209ENST00000504157 PPARGC1BQ86YN6 1023 aaKnown RBP29.38■■■□□ 2.29
POLR2J3-209ENST00000504157 MYO15BQ96JP2 1530 aa29.33■■■□□ 2.29
POLR2J3-209ENST00000504157 ZCCHC6Q5VYS8 1495 aaKnown RBP29.28■■■□□ 2.28
POLR2J3-209ENST00000504157 PCGF6Q9BYE7 350 aa29.28■■■□□ 2.28
POLR2J3-209ENST00000504157 CHIC1Q5VXU3 224 aa29.21■■■□□ 2.27
POLR2J3-209ENST00000504157 DCAF1Q9Y4B6 1507 aa28.99■■■□□ 2.23
POLR2J3-209ENST00000504157 MYT1Q01538 1121 aa28.93■■■□□ 2.22
POLR2J3-209ENST00000504157 ABCC9O60706 1549 aa28.88■■■□□ 2.21
POLR2J3-209ENST00000504157 SCAF1Q9H7N4 1312 aaKnown RBP28.76■■■□□ 2.19
POLR2J3-209ENST00000504157 DCAF8L2P0C7V8 631 aa28.51■■■□□ 2.15
POLR2J3-209ENST00000504157 TRIM26Q12899 539 aaPredicted RBP28.45■■■□□ 2.15
POLR2J3-209ENST00000504157 ZEB1P37275 1124 aaPredicted RBP28.42■■■□□ 2.14
POLR2J3-209ENST00000504157 LOC105371045A0A1W2PR82 267 aa28.24■■■□□ 2.11
POLR2J3-209ENST00000504157 NACADO15069 1562 aa28.03■■■□□ 2.08
POLR2J3-209ENST00000504157 ACIN1Q9UKV3 1341 aaKnown RBP28.01■■■□□ 2.07
POLR2J3-209ENST00000504157 RB1CC1Q8TDY2 1594 aa27.92■■■□□ 2.06
POLR2J3-209ENST00000504157 NEUROD1Q13562 356 aa27.82■■■□□ 2.04
POLR2J3-209ENST00000504157 GTF3C3Q9Y5Q9 886 aa27.69■■■□□ 2.02
POLR2J3-209ENST00000504157 CENPBP07199 599 aaPredicted RBP27.6■■■□□ 2.01
POLR2J3-209ENST00000504157 SCRIBQ14160 1630 aa27.55■■■□□ 2
POLR2J3-209ENST00000504157 RSF1Q96T23 1441 aaPredicted RBP27.5■■□□□ 1.99
POLR2J3-209ENST00000504157 TRIM41Q8WV44 630 aa27.47■■□□□ 1.99
POLR2J3-209ENST00000504157 UNC13AQ9UPW8 1703 aa27.34■■□□□ 1.97
POLR2J3-209ENST00000504157 TTBK1Q5TCY1 1321 aaPredicted RBP27.31■■□□□ 1.96
POLR2J3-209ENST00000504157 DIEXFQ68CQ4 756 aaKnown RBP27.27■■□□□ 1.96
POLR2J3-209ENST00000504157 PABPN1Q86U42 306 aaKnown RBP eCLIP27.17■■□□□ 1.94
POLR2J3-209ENST00000504157 FAM9AQ8IZU1 332 aaPredicted RBP27.13■■□□□ 1.93
POLR2J3-209ENST00000504157 BICRAQ9NZM4 1560 aa27.1■■□□□ 1.93
POLR2J3-209ENST00000504157 CCER1Q8TC90 406 aaPredicted RBP27.01■■□□□ 1.91
POLR2J3-209ENST00000504157 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP26.98■■□□□ 1.91
POLR2J3-209ENST00000504157 WRNQ14191 1432 aaPredicted RBP eCLIP26.88■■□□□ 1.891e-6■■■■■ 58.5
POLR2J3-209ENST00000504157 EIF4G1Q04637 1599 aaKnown RBP26.76■■□□□ 1.87
POLR2J3-209ENST00000504157 BCL11AQ9H165 835 aa26.76■■□□□ 1.87
POLR2J3-209ENST00000504157 EHMT2Q96KQ7 1210 aa26.74■■□□□ 1.87
POLR2J3-209ENST00000504157 ZNF316A6NFI3 1004 aaPredicted RBP26.71■■□□□ 1.87
POLR2J3-209ENST00000504157 MROH2BQ7Z745 1585 aa26.7■■□□□ 1.86
POLR2J3-209ENST00000504157 CECR2Q9BXF3 1484 aa26.66■■□□□ 1.86
POLR2J3-209ENST00000504157 YTHDC1Q96MU7 727 aaKnown RBP26.66■■□□□ 1.86
POLR2J3-209ENST00000504157 ANP32EQ9BTT0 268 aa26.62■■□□□ 1.85
POLR2J3-209ENST00000504157 BAZ1AQ9NRL2 1556 aaPredicted RBP26.61■■□□□ 1.85
POLR2J3-209ENST00000504157 WIZO95785 1651 aa26.58■■□□□ 1.85
POLR2J3-209ENST00000504157 CLSPNQ9HAW4 1339 aa26.53■■□□□ 1.84
POLR2J3-209ENST00000504157 CEP162Q5TB80 1403 aa26.53■■□□□ 1.84
POLR2J3-209ENST00000504157 MIER1Q8N108 512 aa26.5■■□□□ 1.83
POLR2J3-209ENST00000504157 TNIKQ9UKE5 1360 aa26.49■■□□□ 1.83
POLR2J3-209ENST00000504157 EEA1Q15075 1411 aa26.39■■□□□ 1.82
POLR2J3-209ENST00000504157 TSHZ2Q9NRE2 1034 aa26.34■■□□□ 1.81
POLR2J3-209ENST00000504157 SUPT16HQ9Y5B9 1047 aaKnown RBP26.34■■□□□ 1.81
POLR2J3-209ENST00000504157 SMARCA4P51532 1647 aa26.34■■□□□ 1.81
POLR2J3-209ENST00000504157 CCDC88BA6NC98 1476 aa26.33■■□□□ 1.81
POLR2J3-209ENST00000504157 TOP2AP11388 1531 aaKnown RBP26.28■■□□□ 1.8
POLR2J3-209ENST00000504157 ABCC8Q09428 1581 aa26.25■■□□□ 1.79
POLR2J3-209ENST00000504157 CSRNP3Q8WYN3 585 aa26.25■■□□□ 1.79
POLR2J3-209ENST00000504157 SOGA1O94964 1423 aa26.19■■□□□ 1.78
POLR2J3-209ENST00000504157 GOLGA3Q08378 1498 aa26.17■■□□□ 1.78
POLR2J3-209ENST00000504157 SMARCA2P51531 1590 aa26.13■■□□□ 1.77
POLR2J3-209ENST00000504157 CC2D2AQ9P2K1 1620 aa26.07■■□□□ 1.76
POLR2J3-209ENST00000504157 ATAD2BQ9ULI0 1458 aa26.05■■□□□ 1.76
POLR2J3-209ENST00000504157 PEG3Q9GZU2 1588 aa26.01■■□□□ 1.75
POLR2J3-209ENST00000504157 UBTFP17480 764 aaKnown RBP26■■□□□ 1.75
POLR2J3-209ENST00000504157 RUSC2Q8N2Y8 1516 aa25.99■■□□□ 1.75
POLR2J3-209ENST00000504157 KIF21BO75037 1637 aa25.97■■□□□ 1.75
POLR2J3-209ENST00000504157 DNAJC5BQ9UF47 199 aa25.95■■□□□ 1.75
POLR2J3-209ENST00000504157 CEP164Q9UPV0 1460 aa25.95■■□□□ 1.74
POLR2J3-209ENST00000504157 PRKCSHP14314 528 aaPredicted RBP25.91■■□□□ 1.74
POLR2J3-209ENST00000504157 VPS8Q8N3P4 1428 aa25.9■■□□□ 1.74
POLR2J3-209ENST00000504157 NCAPD3P42695 1498 aa25.9■■□□□ 1.74
POLR2J3-209ENST00000504157 HNRNPUL2Q1KMD3 747 aaKnown RBP25.89■■□□□ 1.74
POLR2J3-209ENST00000504157 BAZ1BQ9UIG0 1483 aaKnown RBP25.88■■□□□ 1.73
POLR2J3-209ENST00000504157 CLIP1P30622 1438 aa25.85■■□□□ 1.73
POLR2J3-209ENST00000504157 HMGXB3Q12766 1538 aa25.79■■□□□ 1.72
POLR2J3-209ENST00000504157 DHX57Q6P158 1386 aaKnown RBP25.71■■□□□ 1.71
POLR2J3-209ENST00000504157 RBM19Q9Y4C8 960 aaKnown RBP25.68■■□□□ 1.7
POLR2J3-209ENST00000504157 APLP2Q06481 763 aa25.65■■□□□ 1.7
POLR2J3-209ENST00000504157 SYNJ1O43426 1573 aa25.63■■□□□ 1.69
POLR2J3-209ENST00000504157 CUX2O14529 1486 aa25.55■■□□□ 1.68
POLR2J3-209ENST00000504157 RAPGEF2Q9Y4G8 1499 aa25.54■■□□□ 1.68
POLR2J3-209ENST00000504157 ERICH6Q7L0X2 663 aa25.52■■□□□ 1.68
POLR2J3-209ENST00000504157 BCANQ96GW7 911 aa25.51■■□□□ 1.67
POLR2J3-209ENST00000504157 FKBP8Q14318 412 aa25.49■■□□□ 1.67
POLR2J3-209ENST00000504157 RRBP1Q9P2E9 1410 aaKnown RBP25.47■■□□□ 1.67
POLR2J3-209ENST00000504157 MSH5O43196 834 aa25.47■■□□□ 1.67
POLR2J3-209ENST00000504157 ERICH3Q5RHP9 1530 aa25.42■■□□□ 1.66
POLR2J3-209ENST00000504157 MYT1LQ9UL68 1186 aa25.38■■□□□ 1.65
POLR2J3-209ENST00000504157 ARAP1Q96P48 1450 aa25.38■■□□□ 1.65
POLR2J3-209ENST00000504157 FANCIQ9NVI1 1328 aa25.37■■□□□ 1.65
POLR2J3-209ENST00000504157 KCNH8Q96L42 1107 aa25.32■■□□□ 1.64
POLR2J3-209ENST00000504157 NEFLP07196 543 aa25.31■■□□□ 1.64
POLR2J3-209ENST00000504157 TOP2BQ02880 1626 aa25.3■■□□□ 1.64
POLR2J3-209ENST00000504157 PRXQ9BXM0 1461 aa25.3■■□□□ 1.64
POLR2J3-209ENST00000504157 CCNB3Q8WWL7 1395 aa25.23■■□□□ 1.63
POLR2J3-209ENST00000504157 CADPSQ9ULU8 1353 aa25.22■■□□□ 1.63
POLR2J3-209ENST00000504157 KANK4Q5T7N3 995 aaPredicted RBP25.22■■□□□ 1.63
POLR2J3-209ENST00000504157 BIVM-ERCC5R4GMW8 1640 aa25.22■■□□□ 1.63
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms