RNA–Protein interactions for RNA: ENST00000498708.1

SPTA1-209, Transcript of spectrin alpha, erythrocytic 1, humanhuman

TSL 3

Gene SPTA1, Length 600 nt, Biotype retained intron, Subcellular localisation Cytosol, Dendrite .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1-209ENST00000498708 AEBP2Q6ZN18 517 aaPredicted RBP20.66■□□□□ 0.9
SPTA1-209ENST00000498708 CHIC1Q5VXU3 224 aa19.78■□□□□ 0.76
SPTA1-209ENST00000498708 SENP3Q9H4L4 574 aaPredicted RBP17.73■□□□□ 0.43
SPTA1-209ENST00000498708 PHF23Q9BUL5 403 aaPredicted RBP17.46■□□□□ 0.39
SPTA1-209ENST00000498708 FOXD1Q16676 465 aa16.43■□□□□ 0.22
SPTA1-209ENST00000498708 PLPPR3Q6T4P5 718 aa15.9■□□□□ 0.14
SPTA1-209ENST00000498708 MSH5O43196 834 aa15.43■□□□□ 0.06
SPTA1-209ENST00000498708 PIAS4Q8N2W9 510 aaPredicted RBP15.41■□□□□ 0.06
SPTA1-209ENST00000498708 PPP6R1Q9UPN7 881 aa15.41■□□□□ 0.06
SPTA1-209ENST00000498708 ADRA2BP18089 450 aa15.38■□□□□ 0.05
SPTA1-209ENST00000498708 POTEDQ86YR6 584 aa14.81□□□□□ -0.04
SPTA1-209ENST00000498708 NISCHQ9Y2I1 1504 aa14.31□□□□□ -0.12
SPTA1-209ENST00000498708 SCAF1Q9H7N4 1312 aaKnown RBP14.21□□□□□ -0.13
SPTA1-209ENST00000498708 MAPK8IP2Q13387 824 aaPredicted RBP14.08□□□□□ -0.16
SPTA1-209ENST00000498708 DMRT2Q9Y5R5 561 aa14.05□□□□□ -0.16
SPTA1-209ENST00000498708 PPP4R3CPQ6ZMV5 832 aa13.91□□□□□ -0.18
SPTA1-209ENST00000498708 ABCC9O60706 1549 aa13.71□□□□□ -0.21
SPTA1-209ENST00000498708 CNKSR2Q8WXI2 1034 aa13.66□□□□□ -0.22
SPTA1-209ENST00000498708 HOXD11P31277 338 aaPredicted RBP13.56□□□□□ -0.24
SPTA1-209ENST00000498708 RNF216Q9NWF9 866 aaPredicted RBP13.51□□□□□ -0.25
SPTA1-209ENST00000498708 NCBP3Q53F19 620 aaKnown RBP13.49□□□□□ -0.25
SPTA1-209ENST00000498708 DNAJC5BQ9UF47 199 aa13.49□□□□□ -0.25
SPTA1-209ENST00000498708 DCAF8L1A6NGE4 600 aa13.47□□□□□ -0.25
SPTA1-209ENST00000498708 NPM3O75607 178 aaKnown RBP13.19□□□□□ -0.3
SPTA1-209ENST00000498708 CACNB1Q02641 598 aaPredicted RBP13.15□□□□□ -0.3
SPTA1-209ENST00000498708 RNF39Q9H2S5 420 aa13.13□□□□□ -0.31
SPTA1-209ENST00000498708 CCDC180Q9P1Z9 1646 aa13.05□□□□□ -0.32
SPTA1-209ENST00000498708 KCNA4P22459 653 aa13.01□□□□□ -0.33
SPTA1-209ENST00000498708 C1QBPQ07021 282 aaKnown RBP13□□□□□ -0.33
SPTA1-209ENST00000498708 GRWD1Q9BQ67 446 aaKnown RBP eCLIP12.95□□□□□ -0.342e-6■■■■□ 21.8
SPTA1-209ENST00000498708 DNAJC5Q9H3Z4 198 aa12.75□□□□□ -0.37
SPTA1-209ENST00000498708 PABPN1Q86U42 306 aaKnown RBP eCLIP12.72□□□□□ -0.37
SPTA1-209ENST00000498708 RB1CC1Q8TDY2 1594 aa12.72□□□□□ -0.37
SPTA1-209ENST00000498708 U3KPZ7 1027 aaPredicted RBP12.63□□□□□ -0.39
SPTA1-209ENST00000498708 SLC4A2P04920 1241 aa12.55□□□□□ -0.4
SPTA1-209ENST00000498708 UNC13AQ9UPW8 1703 aa12.51□□□□□ -0.41
SPTA1-209ENST00000498708 NACADO15069 1562 aa12.48□□□□□ -0.41
SPTA1-209ENST00000498708 BICRAQ9NZM4 1560 aa12.44□□□□□ -0.42
SPTA1-209ENST00000498708 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.44□□□□□ -0.42
SPTA1-209ENST00000498708 CAPN15O75808 1086 aa12.44□□□□□ -0.42
SPTA1-209ENST00000498708 APLP2Q06481 763 aa12.44□□□□□ -0.42
SPTA1-209ENST00000498708 HNRNPUL2Q1KMD3 747 aaKnown RBP12.44□□□□□ -0.42
SPTA1-209ENST00000498708 SPINK5Q9NQ38 1064 aaPredicted RBP12.41□□□□□ -0.42
SPTA1-209ENST00000498708 DCAF8L2P0C7V8 631 aa12.4□□□□□ -0.42
SPTA1-209ENST00000498708 CECR2Q9BXF3 1484 aa12.39□□□□□ -0.43
SPTA1-209ENST00000498708 SAMD1Q6SPF0 538 aaPredicted RBP12.35□□□□□ -0.43
SPTA1-209ENST00000498708 SLC4A1APQ9BWU0 796 aaKnown RBP12.35□□□□□ -0.43
SPTA1-209ENST00000498708 CC2D2AQ9P2K1 1620 aa12.34□□□□□ -0.43
SPTA1-209ENST00000498708 DSG3P32926 999 aa12.31□□□□□ -0.44
SPTA1-209ENST00000498708 ZNF219Q9P2Y4 722 aaPredicted RBP12.28□□□□□ -0.44
SPTA1-209ENST00000498708 MYCNP04198 464 aaPredicted RBP12.25□□□□□ -0.45
SPTA1-209ENST00000498708 TRHP20396 242 aaPredicted RBP12.24□□□□□ -0.45
SPTA1-209ENST00000498708 FOXD4L1Q9NU39 408 aa12.16□□□□□ -0.46
SPTA1-209ENST00000498708 EIF4G1Q04637 1599 aaKnown RBP12.15□□□□□ -0.46
SPTA1-209ENST00000498708 ABCB7O75027 752 aa12.1□□□□□ -0.47
SPTA1-209ENST00000498708 MYO15BQ96JP2 1530 aa12.08□□□□□ -0.48
SPTA1-209ENST00000498708 SHROOM4Q9ULL8 1493 aa12.08□□□□□ -0.48
SPTA1-209ENST00000498708 CUX2O14529 1486 aa12□□□□□ -0.49
SPTA1-209ENST00000498708 TRIM41Q8WV44 630 aa11.96□□□□□ -0.49
SPTA1-209ENST00000498708 POLA2Q14181 598 aa11.94□□□□□ -0.5
SPTA1-209ENST00000498708 ZBTB22O15209 634 aa11.92□□□□□ -0.5
SPTA1-209ENST00000498708 SCRIBQ14160 1630 aa11.91□□□□□ -0.5
SPTA1-209ENST00000498708 ATF5Q9Y2D1 282 aaPredicted RBP11.86□□□□□ -0.51
SPTA1-209ENST00000498708 ATXN8OSP0DMR3 200 aa11.84□□□□□ -0.51
SPTA1-209ENST00000498708 RBM42Q9BTD8 480 aaKnown RBP11.84□□□□□ -0.51
SPTA1-209ENST00000498708 ERCC6Q03468 1493 aa11.83□□□□□ -0.52
SPTA1-209ENST00000498708 ZBTB12Q9Y330 459 aaPredicted RBP11.81□□□□□ -0.52
SPTA1-209ENST00000498708 DCAF1Q9Y4B6 1507 aa11.72□□□□□ -0.53
SPTA1-209ENST00000498708 ZCCHC6Q5VYS8 1495 aaKnown RBP11.7□□□□□ -0.54
SPTA1-209ENST00000498708 POTEHQ6S545 545 aa11.65□□□□□ -0.54
SPTA1-209ENST00000498708 NESP48681 1621 aa11.64□□□□□ -0.55
SPTA1-209ENST00000498708 THOC2Q8NI27 1593 aaKnown RBP11.58□□□□□ -0.55
SPTA1-209ENST00000498708 NCAPD3P42695 1498 aa11.56□□□□□ -0.56
SPTA1-209ENST00000498708 AKT1S1Q96B36 256 aa11.55□□□□□ -0.56
SPTA1-209ENST00000498708 OSCARQ8IYS5 282 aa11.54□□□□□ -0.56
SPTA1-209ENST00000498708 FBLN2P98095 1184 aa11.53□□□□□ -0.56
SPTA1-209ENST00000498708 CSRNP3Q8WYN3 585 aa11.5□□□□□ -0.57
SPTA1-209ENST00000498708 CHRDL2Q6WN34 429 aa11.48□□□□□ -0.57
SPTA1-209ENST00000498708 SMARCA2P51531 1590 aa11.47□□□□□ -0.57
SPTA1-209ENST00000498708 ATAD2BQ9ULI0 1458 aa11.44□□□□□ -0.58
SPTA1-209ENST00000498708 KIF21AQ7Z4S6 1674 aa11.44□□□□□ -0.58
SPTA1-209ENST00000498708 REM2Q8IYK8 340 aaPredicted RBP11.41□□□□□ -0.58
SPTA1-209ENST00000498708 EHMT2Q96KQ7 1210 aa11.41□□□□□ -0.58
SPTA1-209ENST00000498708 SPDYE2BA6NHP3 402 aa11.4□□□□□ -0.58
SPTA1-209ENST00000498708 SPDYE6P0CI01 402 aa11.4□□□□□ -0.58
SPTA1-209ENST00000498708 SPDYE2Q495Y8 402 aa11.4□□□□□ -0.58
SPTA1-209ENST00000498708 BAZ1AQ9NRL2 1556 aaPredicted RBP11.39□□□□□ -0.59
SPTA1-209ENST00000498708 HMGXB3Q12766 1538 aa11.38□□□□□ -0.59
SPTA1-209ENST00000498708 LAMC3Q9Y6N6 1575 aa11.37□□□□□ -0.59
SPTA1-209ENST00000498708 MKRN4PQ13434 485 aaPredicted RBP11.34□□□□□ -0.59
SPTA1-209ENST00000498708 PDS5BQ9NTI5 1447 aa11.33□□□□□ -0.6
SPTA1-209ENST00000498708 RIMBP3CA6NJZ7 1639 aa11.32□□□□□ -0.6
SPTA1-209ENST00000498708 RIMBP3BA6NNM3 1639 aa11.32□□□□□ -0.6
SPTA1-209ENST00000498708 RIMBP3Q9UFD9 1639 aa11.32□□□□□ -0.6
SPTA1-209ENST00000498708 SMARCA4P51532 1647 aa11.28□□□□□ -0.6
SPTA1-209ENST00000498708 MRC2Q9UBG0 1479 aa11.28□□□□□ -0.6
SPTA1-209ENST00000498708 BAZ1BQ9UIG0 1483 aaKnown RBP11.28□□□□□ -0.6
SPTA1-209ENST00000498708 WDR62O43379 1518 aa11.27□□□□□ -0.61
SPTA1-209ENST00000498708 PITPNM1O00562 1244 aa11.27□□□□□ -0.61
SPTA1-209ENST00000498708 ZNF692Q9BU19 519 aaPredicted RBP11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms