RNA–Protein interactions for RNA: ENST00000497663.1

TNRC18-210, Transcript of trinucleotide repeat containing 18, humanhuman

TSL 2

Gene TNRC18, Length 588 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNRC18-210ENST00000497663 AEBP2Q6ZN18 517 aaPredicted RBP43.26■■■■■ 4.52
TNRC18-210ENST00000497663 CHIC1Q5VXU3 224 aa42.41■■■■■ 4.38
TNRC18-210ENST00000497663 NISCHQ9Y2I1 1504 aa38■■■■□ 3.67
TNRC18-210ENST00000497663 PHF23Q9BUL5 403 aaPredicted RBP37.23■■■■□ 3.55
TNRC18-210ENST00000497663 SENP3Q9H4L4 574 aaPredicted RBP36.81■■■■□ 3.48
TNRC18-210ENST00000497663 PLPPR3Q6T4P5 718 aa34.53■■■■□ 3.12
TNRC18-210ENST00000497663 ABCC9O60706 1549 aa34.1■■■■□ 3.05
TNRC18-210ENST00000497663 FOXD1Q16676 465 aa34.08■■■■□ 3.05
TNRC18-210ENST00000497663 CCDC180Q9P1Z9 1646 aa33.92■■■■□ 3.02
TNRC18-210ENST00000497663 ADRA2BP18089 450 aa32.83■■■□□ 2.85
TNRC18-210ENST00000497663 PPP6R1Q9UPN7 881 aa32.82■■■□□ 2.84
TNRC18-210ENST00000497663 RB1CC1Q8TDY2 1594 aa32.29■■■□□ 2.76
TNRC18-210ENST00000497663 PIAS4Q8N2W9 510 aaPredicted RBP32.22■■■□□ 2.75
TNRC18-210ENST00000497663 DCAF8L2P0C7V8 631 aa32.13■■■□□ 2.73
TNRC18-210ENST00000497663 DNAJC5BQ9UF47 199 aa32.11■■■□□ 2.73
TNRC18-210ENST00000497663 NACADO15069 1562 aa32.09■■■□□ 2.73
TNRC18-210ENST00000497663 PABPN1Q86U42 306 aaKnown RBP eCLIP31.85■■■□□ 2.69
TNRC18-210ENST00000497663 UNC13AQ9UPW8 1703 aa31.66■■■□□ 2.66
TNRC18-210ENST00000497663 MYO15BQ96JP2 1530 aa31.63■■■□□ 2.65
TNRC18-210ENST00000497663 BICRAQ9NZM4 1560 aa31.53■■■□□ 2.64
TNRC18-210ENST00000497663 ZCCHC6Q5VYS8 1495 aaKnown RBP31.51■■■□□ 2.63
TNRC18-210ENST00000497663 MSH5O43196 834 aa31.48■■■□□ 2.63
TNRC18-210ENST00000497663 DCAF1Q9Y4B6 1507 aa31.28■■■□□ 2.6
TNRC18-210ENST00000497663 SCRIBQ14160 1630 aa31.09■■■□□ 2.57
TNRC18-210ENST00000497663 SHROOM4Q9ULL8 1493 aa30.83■■■□□ 2.53
TNRC18-210ENST00000497663 CC2D2AQ9P2K1 1620 aa30.74■■■□□ 2.51
TNRC18-210ENST00000497663 EIF4G1Q04637 1599 aaKnown RBP30.67■■■□□ 2.5
TNRC18-210ENST00000497663 CECR2Q9BXF3 1484 aa30.65■■■□□ 2.5
TNRC18-210ENST00000497663 PPP4R3CPQ6ZMV5 832 aa30.41■■■□□ 2.46
TNRC18-210ENST00000497663 SCAF1Q9H7N4 1312 aaKnown RBP30.16■■■□□ 2.42
TNRC18-210ENST00000497663 KCNA4P22459 653 aa29.79■■■□□ 2.36
TNRC18-210ENST00000497663 MAPK8IP2Q13387 824 aaPredicted RBP29.74■■■□□ 2.35
TNRC18-210ENST00000497663 NCBP3Q53F19 620 aaKnown RBP29.71■■■□□ 2.35
TNRC18-210ENST00000497663 NCAPD3P42695 1498 aa29.7■■■□□ 2.35
TNRC18-210ENST00000497663 ATAD2BQ9ULI0 1458 aa29.67■■■□□ 2.34
TNRC18-210ENST00000497663 SMARCA4P51532 1647 aa29.61■■■□□ 2.33
TNRC18-210ENST00000497663 CNKSR2Q8WXI2 1034 aa29.56■■■□□ 2.32
TNRC18-210ENST00000497663 SMARCA2P51531 1590 aa29.46■■■□□ 2.31
TNRC18-210ENST00000497663 HMGXB3Q12766 1538 aa29.42■■■□□ 2.3
TNRC18-210ENST00000497663 BAZ1AQ9NRL2 1556 aaPredicted RBP29.4■■■□□ 2.3
TNRC18-210ENST00000497663 DMRT2Q9Y5R5 561 aa29.37■■■□□ 2.29
TNRC18-210ENST00000497663 MROH2BQ7Z745 1585 aa29.37■■■□□ 2.29
TNRC18-210ENST00000497663 NESP48681 1621 aa29.37■■■□□ 2.29
TNRC18-210ENST00000497663 BAZ1BQ9UIG0 1483 aaKnown RBP29.32■■■□□ 2.28
TNRC18-210ENST00000497663 ERCC6Q03468 1493 aa29.31■■■□□ 2.28
TNRC18-210ENST00000497663 PEG3Q9GZU2 1588 aa29.27■■■□□ 2.28
TNRC18-210ENST00000497663 DNAJC5Q9H3Z4 198 aa29.25■■■□□ 2.27
TNRC18-210ENST00000497663 CUX2O14529 1486 aa29.19■■■□□ 2.26
TNRC18-210ENST00000497663 NPM3O75607 178 aaKnown RBP29.19■■■□□ 2.26
TNRC18-210ENST00000497663 WIZO95785 1651 aa28.99■■■□□ 2.23
TNRC18-210ENST00000497663 RNF216Q9NWF9 866 aaPredicted RBP28.95■■■□□ 2.22
TNRC18-210ENST00000497663 THOC2Q8NI27 1593 aaKnown RBP28.93■■■□□ 2.22
TNRC18-210ENST00000497663 LAMC3Q9Y6N6 1575 aa28.93■■■□□ 2.22
TNRC18-210ENST00000497663 KIF21AQ7Z4S6 1674 aa28.86■■■□□ 2.21
TNRC18-210ENST00000497663 CADPSQ9ULU8 1353 aa28.82■■■□□ 2.2
TNRC18-210ENST00000497663 PDS5BQ9NTI5 1447 aa28.79■■■□□ 2.2
TNRC18-210ENST00000497663 HOXD11P31277 338 aaPredicted RBP28.78■■■□□ 2.2
TNRC18-210ENST00000497663 RSF1Q96T23 1441 aaPredicted RBP28.77■■■□□ 2.2
TNRC18-210ENST00000497663 MRC2Q9UBG0 1479 aa28.59■■■□□ 2.17
TNRC18-210ENST00000497663 TOP2AP11388 1531 aaKnown RBP28.54■■■□□ 2.16
TNRC18-210ENST00000497663 WDR62O43379 1518 aa28.53■■■□□ 2.16
TNRC18-210ENST00000497663 CFTRP13569 1480 aa28.5■■■□□ 2.15
TNRC18-210ENST00000497663 FANCD2Q9BXW9 1451 aa28.5■■■□□ 2.15
TNRC18-210ENST00000497663 CEP164Q9UPV0 1460 aa28.46■■■□□ 2.15
TNRC18-210ENST00000497663 SLC4A1APQ9BWU0 796 aaKnown RBP28.44■■■□□ 2.14
TNRC18-210ENST00000497663 POTEDQ86YR6 584 aa28.43■■■□□ 2.14
TNRC18-210ENST00000497663 URB2Q14146 1524 aaKnown RBP28.33■■■□□ 2.13
TNRC18-210ENST00000497663 CCDC88BA6NC98 1476 aa28.31■■■□□ 2.12
TNRC18-210ENST00000497663 DCAF8L1A6NGE4 600 aa28.16■■■□□ 2.1
TNRC18-210ENST00000497663 PRDM2Q13029 1718 aa28.06■■■□□ 2.08
TNRC18-210ENST00000497663 TRIM41Q8WV44 630 aa28.05■■■□□ 2.08
TNRC18-210ENST00000497663 ZNF608Q9ULD9 1512 aaPredicted RBP28.02■■■□□ 2.08
TNRC18-210ENST00000497663 TOPBP1Q92547 1522 aa27.97■■■□□ 2.07
TNRC18-210ENST00000497663 OSCARQ8IYS5 282 aa27.93■■■□□ 2.06
TNRC18-210ENST00000497663 IFT140Q96RY7 1462 aa27.89■■■□□ 2.06
TNRC18-210ENST00000497663 DNMBPQ6XZF7 1577 aa27.82■■■□□ 2.04
TNRC18-210ENST00000497663 AQRO60306 1485 aaKnown RBP eCLIP27.75■■■□□ 2.032e-7■■■□□ 17.1
TNRC18-210ENST00000497663 ABCC8Q09428 1581 aa27.74■■■□□ 2.03
TNRC18-210ENST00000497663 EIF4G3O43432 1585 aaKnown RBP27.73■■■□□ 2.03
TNRC18-210ENST00000497663 EHMT2Q96KQ7 1210 aa27.73■■■□□ 2.03
TNRC18-210ENST00000497663 TARBP1Q13395 1621 aaKnown RBP27.72■■■□□ 2.03
TNRC18-210ENST00000497663 POLA1P09884 1462 aaPredicted RBP27.71■■■□□ 2.03
TNRC18-210ENST00000497663 RAD54L2Q9Y4B4 1467 aa27.69■■■□□ 2.02
TNRC18-210ENST00000497663 RIMBP3CA6NJZ7 1639 aa27.6■■■□□ 2.01
TNRC18-210ENST00000497663 RIMBP3BA6NNM3 1639 aa27.6■■■□□ 2.01
TNRC18-210ENST00000497663 RIMBP3Q9UFD9 1639 aa27.6■■■□□ 2.01
TNRC18-210ENST00000497663 TDRD9Q8NDG6 1382 aaKnown RBP27.59■■■□□ 2.01
TNRC18-210ENST00000497663 SUPT5HO00267 1087 aaKnown RBP27.58■■■□□ 2.01
TNRC18-210ENST00000497663 CUX1P39880 1505 aa27.57■■■□□ 2
TNRC18-210ENST00000497663 SOGA1O94964 1423 aa27.56■■■□□ 2
TNRC18-210ENST00000497663 FGD5Q6ZNL6 1462 aa27.55■■■□□ 2
TNRC18-210ENST00000497663 ARHGEF11O15085 1522 aa27.52■■■□□ 2
TNRC18-210ENST00000497663 CHD1O14646 1710 aa27.51■■□□□ 1.99
TNRC18-210ENST00000497663 SLC4A2P04920 1241 aa27.5■■□□□ 1.99
TNRC18-210ENST00000497663 FBLN2P98095 1184 aa27.5■■□□□ 1.99
TNRC18-210ENST00000497663 GRWD1Q9BQ67 446 aaKnown RBP eCLIP27.5■■□□□ 1.99
TNRC18-210ENST00000497663 FOXD4L1Q9NU39 408 aa27.44■■□□□ 1.98
TNRC18-210ENST00000497663 SNAPC4Q5SXM2 1469 aa27.4■■□□□ 1.98
TNRC18-210ENST00000497663 CYB5RLQ6IPT4 315 aa27.37■■□□□ 1.97
TNRC18-210ENST00000497663 ZBTB22O15209 634 aa27.36■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms