RNA–Protein interactions for RNA: ENST00000495090.6

SYNE1-230, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 1,907 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-230ENST00000495090 NISCHQ9Y2I1 1504 aa18.95■□□□□ 0.62
SYNE1-230ENST00000495090 AEBP2Q6ZN18 517 aaPredicted RBP16.59■□□□□ 0.25
SYNE1-230ENST00000495090 HRCP23327 699 aa16.3■□□□□ 0.2
SYNE1-230ENST00000495090 SHROOM4Q9ULL8 1493 aa16.24■□□□□ 0.19
SYNE1-230ENST00000495090 ZCCHC6Q5VYS8 1495 aaKnown RBP16.15■□□□□ 0.18
SYNE1-230ENST00000495090 SUPT5HO00267 1087 aaKnown RBP16.13■□□□□ 0.17
SYNE1-230ENST00000495090 MYO15BQ96JP2 1530 aa16.05■□□□□ 0.16
SYNE1-230ENST00000495090 CHIC1Q5VXU3 224 aa16.01■□□□□ 0.15
SYNE1-230ENST00000495090 CCDC180Q9P1Z9 1646 aa15.99■□□□□ 0.15
SYNE1-230ENST00000495090 DCAF1Q9Y4B6 1507 aa15.92■□□□□ 0.14
SYNE1-230ENST00000495090 PCGF6Q9BYE7 350 aa15.87■□□□□ 0.13
SYNE1-230ENST00000495090 PPARGC1BQ86YN6 1023 aaKnown RBP15.71■□□□□ 0.11
SYNE1-230ENST00000495090 PELP1Q8IZL8 1130 aaKnown RBP15.65■□□□□ 0.1
SYNE1-230ENST00000495090 TRIM26Q12899 539 aaPredicted RBP15.59■□□□□ 0.09
SYNE1-230ENST00000495090 ZEB1P37275 1124 aaPredicted RBP15.53■□□□□ 0.08
SYNE1-230ENST00000495090 LOC105371045A0A1W2PR82 267 aa15.45■□□□□ 0.06
SYNE1-230ENST00000495090 ABCC9O60706 1549 aa15.33■□□□□ 0.04
SYNE1-230ENST00000495090 DCAF8L2P0C7V8 631 aa15.3■□□□□ 0.04
SYNE1-230ENST00000495090 SCAF1Q9H7N4 1312 aaKnown RBP15.23■□□□□ 0.03
SYNE1-230ENST00000495090 RSF1Q96T23 1441 aaPredicted RBP15.13■□□□□ 0.01
SYNE1-230ENST00000495090 RB1CC1Q8TDY2 1594 aa15.09■□□□□ 0.01
SYNE1-230ENST00000495090 TRIM41Q8WV44 630 aa15.07■□□□□ 0
SYNE1-230ENST00000495090 MYT1Q01538 1121 aa15.07■□□□□ 0
SYNE1-230ENST00000495090 ACIN1Q9UKV3 1341 aaKnown RBP14.98□□□□□ -0.01
SYNE1-230ENST00000495090 SCRIBQ14160 1630 aa14.9□□□□□ -0.02
SYNE1-230ENST00000495090 CENPBP07199 599 aaPredicted RBP14.86□□□□□ -0.03
SYNE1-230ENST00000495090 NEUROD1Q13562 356 aa14.86□□□□□ -0.03
SYNE1-230ENST00000495090 FAM9AQ8IZU1 332 aaPredicted RBP14.84□□□□□ -0.03
SYNE1-230ENST00000495090 CCER1Q8TC90 406 aaPredicted RBP14.79□□□□□ -0.04
SYNE1-230ENST00000495090 WRNQ14191 1432 aaPredicted RBP eCLIP14.78□□□□□ -0.04
SYNE1-230ENST00000495090 DIEXFQ68CQ4 756 aaKnown RBP14.78□□□□□ -0.04
SYNE1-230ENST00000495090 GTF3C3Q9Y5Q9 886 aa14.76□□□□□ -0.05
SYNE1-230ENST00000495090 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.75□□□□□ -0.05
SYNE1-230ENST00000495090 EIF4G1Q04637 1599 aaKnown RBP14.74□□□□□ -0.05
SYNE1-230ENST00000495090 MROH2BQ7Z745 1585 aa14.7□□□□□ -0.06
SYNE1-230ENST00000495090 BAZ1AQ9NRL2 1556 aaPredicted RBP14.68□□□□□ -0.06
SYNE1-230ENST00000495090 CECR2Q9BXF3 1484 aa14.66□□□□□ -0.06
SYNE1-230ENST00000495090 NACADO15069 1562 aa14.66□□□□□ -0.06
SYNE1-230ENST00000495090 WIZO95785 1651 aa14.63□□□□□ -0.07
SYNE1-230ENST00000495090 EHMT2Q96KQ7 1210 aa14.6□□□□□ -0.07
SYNE1-230ENST00000495090 ZNF316A6NFI3 1004 aaPredicted RBP14.58□□□□□ -0.07
SYNE1-230ENST00000495090 CEP162Q5TB80 1403 aa14.57□□□□□ -0.08
SYNE1-230ENST00000495090 TNIKQ9UKE5 1360 aa14.57□□□□□ -0.08
SYNE1-230ENST00000495090 EEA1Q15075 1411 aa14.55□□□□□ -0.08
SYNE1-230ENST00000495090 TOP2AP11388 1531 aaKnown RBP14.49□□□□□ -0.09
SYNE1-230ENST00000495090 CCDC88BA6NC98 1476 aa14.47□□□□□ -0.09
SYNE1-230ENST00000495090 CLSPNQ9HAW4 1339 aa14.43□□□□□ -0.1
SYNE1-230ENST00000495090 ABCC8Q09428 1581 aa14.42□□□□□ -0.1
SYNE1-230ENST00000495090 SMARCA2P51531 1590 aa14.4□□□□□ -0.1
SYNE1-230ENST00000495090 GOLGA3Q08378 1498 aa14.4□□□□□ -0.1
SYNE1-230ENST00000495090 SOGA1O94964 1423 aa14.38□□□□□ -0.11
SYNE1-230ENST00000495090 MIER1Q8N108 512 aa14.37□□□□□ -0.11
SYNE1-230ENST00000495090 CSRNP3Q8WYN3 585 aa14.36□□□□□ -0.11
SYNE1-230ENST00000495090 SMARCA4P51532 1647 aa14.34□□□□□ -0.11
SYNE1-230ENST00000495090 YTHDC1Q96MU7 727 aaKnown RBP14.32□□□□□ -0.12
SYNE1-230ENST00000495090 KIF21BO75037 1637 aa14.31□□□□□ -0.12
SYNE1-230ENST00000495090 CEP164Q9UPV0 1460 aa14.28□□□□□ -0.12
SYNE1-230ENST00000495090 TTBK1Q5TCY1 1321 aaPredicted RBP14.28□□□□□ -0.12
SYNE1-230ENST00000495090 UBTFP17480 764 aaKnown RBP14.27□□□□□ -0.13
SYNE1-230ENST00000495090 RUSC2Q8N2Y8 1516 aa14.26□□□□□ -0.13
SYNE1-230ENST00000495090 VPS8Q8N3P4 1428 aa14.25□□□□□ -0.13
SYNE1-230ENST00000495090 BAZ1BQ9UIG0 1483 aaKnown RBP14.24□□□□□ -0.13
SYNE1-230ENST00000495090 POTEDQ86YR6 584 aa14.23□□□□□ -0.13
SYNE1-230ENST00000495090 SENP3Q9H4L4 574 aaPredicted RBP14.21□□□□□ -0.14
SYNE1-230ENST00000495090 CLIP1P30622 1438 aa14.21□□□□□ -0.14
SYNE1-230ENST00000495090 HNRNPUL2Q1KMD3 747 aaKnown RBP14.17□□□□□ -0.14
SYNE1-230ENST00000495090 SUPT16HQ9Y5B9 1047 aaKnown RBP14.15□□□□□ -0.14
SYNE1-230ENST00000495090 PEG3Q9GZU2 1588 aa14.13□□□□□ -0.15
SYNE1-230ENST00000495090 SYNJ1O43426 1573 aa14.11□□□□□ -0.15
SYNE1-230ENST00000495090 DHX57Q6P158 1386 aaKnown RBP14.1□□□□□ -0.15
SYNE1-230ENST00000495090 APLP2Q06481 763 aa14.09□□□□□ -0.15
SYNE1-230ENST00000495090 CUX2O14529 1486 aa14.06□□□□□ -0.16
SYNE1-230ENST00000495090 UNC13AQ9UPW8 1703 aa14.06□□□□□ -0.16
SYNE1-230ENST00000495090 ANP32EQ9BTT0 268 aa14.05□□□□□ -0.16
SYNE1-230ENST00000495090 TSHZ2Q9NRE2 1034 aa14.05□□□□□ -0.16
SYNE1-230ENST00000495090 RAPGEF2Q9Y4G8 1499 aa14.04□□□□□ -0.16
SYNE1-230ENST00000495090 ERICH3Q5RHP9 1530 aa14.02□□□□□ -0.17
SYNE1-230ENST00000495090 RRBP1Q9P2E9 1410 aaKnown RBP14.01□□□□□ -0.17
SYNE1-230ENST00000495090 PHF23Q9BUL5 403 aaPredicted RBP14.01□□□□□ -0.17
SYNE1-230ENST00000495090 TOP2BQ02880 1626 aa13.95□□□□□ -0.18
SYNE1-230ENST00000495090 ARAP1Q96P48 1450 aa13.95□□□□□ -0.18
SYNE1-230ENST00000495090 PRXQ9BXM0 1461 aa13.93□□□□□ -0.18
SYNE1-230ENST00000495090 BIVM-ERCC5R4GMW8 1640 aa13.92□□□□□ -0.18
SYNE1-230ENST00000495090 BICRAQ9NZM4 1560 aa13.87□□□□□ -0.19
SYNE1-230ENST00000495090 CCNB3Q8WWL7 1395 aa13.86□□□□□ -0.19
SYNE1-230ENST00000495090 ATAD2BQ9ULI0 1458 aa13.85□□□□□ -0.19
SYNE1-230ENST00000495090 MAPKBP1O60336 1514 aa13.83□□□□□ -0.2
SYNE1-230ENST00000495090 KANK4Q5T7N3 995 aaPredicted RBP13.83□□□□□ -0.2
SYNE1-230ENST00000495090 BCL11AQ9H165 835 aa13.83□□□□□ -0.2
SYNE1-230ENST00000495090 MAP3K1Q13233 1512 aa13.82□□□□□ -0.2
SYNE1-230ENST00000495090 TIMELESSQ9UNS1 1208 aa13.78□□□□□ -0.2
SYNE1-230ENST00000495090 RAB3GAP2Q9H2M9 1393 aa13.76□□□□□ -0.21
SYNE1-230ENST00000495090 CCER2I3L3R5 266 aa13.76□□□□□ -0.21
SYNE1-230ENST00000495090 FKBP8Q14318 412 aa13.75□□□□□ -0.21
SYNE1-230ENST00000495090 ARHGAP35Q9NRY4 1499 aa13.75□□□□□ -0.21
SYNE1-230ENST00000495090 KCNH8Q96L42 1107 aa13.74□□□□□ -0.21
SYNE1-230ENST00000495090 NEFLP07196 543 aa13.74□□□□□ -0.21
SYNE1-230ENST00000495090 KIF27Q86VH2 1401 aa13.74□□□□□ -0.21
SYNE1-230ENST00000495090 RBM19Q9Y4C8 960 aaKnown RBP13.73□□□□□ -0.21
SYNE1-230ENST00000495090 SETD5Q9C0A6 1442 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 9.9 ms