RNA–Protein interactions for RNA: ENST00000493664.5

ZIC4-215, Transcript of Zic family member 4, humanhuman

TSL 2

Gene ZIC4, Length 2,965 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZIC4-215ENST00000493664 NISCHQ9Y2I1 1504 aa28.44■■■□□ 2.14
ZIC4-215ENST00000493664 SHROOM4Q9ULL8 1493 aa24.73■■□□□ 1.55
ZIC4-215ENST00000493664 SUPT5HO00267 1087 aaKnown RBP24.35■■□□□ 1.49
ZIC4-215ENST00000493664 ZCCHC6Q5VYS8 1495 aaKnown RBP24.08■■□□□ 1.45
ZIC4-215ENST00000493664 CCDC180Q9P1Z9 1646 aa23.94■■□□□ 1.42
ZIC4-215ENST00000493664 DCAF8L2P0C7V8 631 aa23.87■■□□□ 1.41
ZIC4-215ENST00000493664 MYO15BQ96JP2 1530 aa23.67■■□□□ 1.38
ZIC4-215ENST00000493664 CHIC1Q5VXU3 224 aa23.66■■□□□ 1.38
ZIC4-215ENST00000493664 HRCP23327 699 aa23.31■■□□□ 1.32
ZIC4-215ENST00000493664 PCGF6Q9BYE7 350 aa23.28■■□□□ 1.32
ZIC4-215ENST00000493664 DCAF1Q9Y4B6 1507 aa23.18■■□□□ 1.3
ZIC4-215ENST00000493664 LOC105371045A0A1W2PR82 267 aa23.1■■□□□ 1.29
ZIC4-215ENST00000493664 PPARGC1BQ86YN6 1023 aaKnown RBP22.98■■□□□ 1.27
ZIC4-215ENST00000493664 ABCC9O60706 1549 aa22.87■■□□□ 1.25
ZIC4-215ENST00000493664 SCRIBQ14160 1630 aa22.72■■□□□ 1.23
ZIC4-215ENST00000493664 RSF1Q96T23 1441 aaPredicted RBP22.66■■□□□ 1.22
ZIC4-215ENST00000493664 TRIM26Q12899 539 aaPredicted RBP22.63■■□□□ 1.21
ZIC4-215ENST00000493664 TRIM41Q8WV44 630 aa22.56■■□□□ 1.2
ZIC4-215ENST00000493664 FAM9AQ8IZU1 332 aaPredicted RBP22.55■■□□□ 1.2
ZIC4-215ENST00000493664 RB1CC1Q8TDY2 1594 aa22.5■■□□□ 1.19
ZIC4-215ENST00000493664 EHMT2Q96KQ7 1210 aa22.48■■□□□ 1.19
ZIC4-215ENST00000493664 CECR2Q9BXF3 1484 aa22.31■■□□□ 1.16
ZIC4-215ENST00000493664 NACADO15069 1562 aa22.22■■□□□ 1.15
ZIC4-215ENST00000493664 MROH2BQ7Z745 1585 aa22.2■■□□□ 1.15
ZIC4-215ENST00000493664 PELP1Q8IZL8 1130 aaKnown RBP22.15■■□□□ 1.14
ZIC4-215ENST00000493664 ZEB1P37275 1124 aaPredicted RBP22.13■■□□□ 1.13
ZIC4-215ENST00000493664 WIZO95785 1651 aa22.12■■□□□ 1.13
ZIC4-215ENST00000493664 BAZ1AQ9NRL2 1556 aaPredicted RBP21.87■■□□□ 1.09
ZIC4-215ENST00000493664 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP21.84■■□□□ 1.09
ZIC4-215ENST00000493664 EIF4G1Q04637 1599 aaKnown RBP21.79■■□□□ 1.08
ZIC4-215ENST00000493664 TTBK1Q5TCY1 1321 aaPredicted RBP21.78■■□□□ 1.08
ZIC4-215ENST00000493664 ABCC8Q09428 1581 aa21.77■■□□□ 1.08
ZIC4-215ENST00000493664 CCER1Q8TC90 406 aaPredicted RBP21.73■■□□□ 1.07
ZIC4-215ENST00000493664 CCDC88BA6NC98 1476 aa21.71■■□□□ 1.07
ZIC4-215ENST00000493664 SCAF1Q9H7N4 1312 aaKnown RBP21.7■■□□□ 1.06
ZIC4-215ENST00000493664 MYT1Q01538 1121 aa21.69■■□□□ 1.06
ZIC4-215ENST00000493664 UNC13AQ9UPW8 1703 aa21.67■■□□□ 1.06
ZIC4-215ENST00000493664 TOP2AP11388 1531 aaKnown RBP21.65■■□□□ 1.06
ZIC4-215ENST00000493664 SMARCA4P51532 1647 aa21.62■■□□□ 1.05
ZIC4-215ENST00000493664 SOGA1O94964 1423 aa21.6■■□□□ 1.05
ZIC4-215ENST00000493664 SMARCA2P51531 1590 aa21.59■■□□□ 1.05
ZIC4-215ENST00000493664 PABPN1Q86U42 306 aaKnown RBP eCLIP21.58■■□□□ 1.04
ZIC4-215ENST00000493664 CEP162Q5TB80 1403 aa21.56■■□□□ 1.04
ZIC4-215ENST00000493664 RUSC2Q8N2Y8 1516 aa21.51■■□□□ 1.03
ZIC4-215ENST00000493664 UBTFP17480 764 aaKnown RBP21.5■■□□□ 1.03
ZIC4-215ENST00000493664 WRNQ14191 1432 aaPredicted RBP eCLIP21.48■■□□□ 1.03
ZIC4-215ENST00000493664 BICRAQ9NZM4 1560 aa21.48■■□□□ 1.03
ZIC4-215ENST00000493664 CSRNP3Q8WYN3 585 aa21.46■■□□□ 1.03
ZIC4-215ENST00000493664 TNIKQ9UKE5 1360 aa21.44■■□□□ 1.02
ZIC4-215ENST00000493664 DIEXFQ68CQ4 756 aaKnown RBP21.41■■□□□ 1.02
ZIC4-215ENST00000493664 NEUROD1Q13562 356 aa21.38■■□□□ 1.01
ZIC4-215ENST00000493664 ACIN1Q9UKV3 1341 aaKnown RBP21.35■■□□□ 1.01
ZIC4-215ENST00000493664 EEA1Q15075 1411 aa21.31■■□□□ 1
ZIC4-215ENST00000493664 GOLGA3Q08378 1498 aa21.28■■□□□ 1
ZIC4-215ENST00000493664 HNRNPUL2Q1KMD3 747 aaKnown RBP21.21■□□□□ 0.99
ZIC4-215ENST00000493664 RANGAP1P46060 587 aaPredicted RBP21.18■□□□□ 0.98
ZIC4-215ENST00000493664 GTF3C3Q9Y5Q9 886 aa21.18■□□□□ 0.98
ZIC4-215ENST00000493664 SYNJ1O43426 1573 aa21.18■□□□□ 0.98
ZIC4-215ENST00000493664 CENPBP07199 599 aaPredicted RBP21.15■□□□□ 0.98
ZIC4-215ENST00000493664 ZNF316A6NFI3 1004 aaPredicted RBP21.14■□□□□ 0.97
ZIC4-215ENST00000493664 CEP164Q9UPV0 1460 aa21.12■□□□□ 0.97
ZIC4-215ENST00000493664 CLIP1P30622 1438 aa21.1■□□□□ 0.97
ZIC4-215ENST00000493664 PEG3Q9GZU2 1588 aa21.08■□□□□ 0.97
ZIC4-215ENST00000493664 YTHDC1Q96MU7 727 aaKnown RBP21.06■□□□□ 0.96
ZIC4-215ENST00000493664 KIF21BO75037 1637 aa21.05■□□□□ 0.96
ZIC4-215ENST00000493664 RAPGEF2Q9Y4G8 1499 aa21.03■□□□□ 0.96
ZIC4-215ENST00000493664 ATAD2BQ9ULI0 1458 aa21.03■□□□□ 0.96
ZIC4-215ENST00000493664 BAZ1BQ9UIG0 1483 aaKnown RBP21■□□□□ 0.95
ZIC4-215ENST00000493664 APLP2Q06481 763 aa21■□□□□ 0.95
ZIC4-215ENST00000493664 VPS8Q8N3P4 1428 aa20.99■□□□□ 0.95
ZIC4-215ENST00000493664 MIER1Q8N108 512 aa20.96■□□□□ 0.95
ZIC4-215ENST00000493664 TOP2BQ02880 1626 aa20.82■□□□□ 0.92
ZIC4-215ENST00000493664 KANK4Q5T7N3 995 aaPredicted RBP20.77■□□□□ 0.92
ZIC4-215ENST00000493664 ARAP1Q96P48 1450 aa20.72■□□□□ 0.91
ZIC4-215ENST00000493664 BIVM-ERCC5R4GMW8 1640 aa20.7■□□□□ 0.9
ZIC4-215ENST00000493664 PRXQ9BXM0 1461 aa20.7■□□□□ 0.9
ZIC4-215ENST00000493664 DHX57Q6P158 1386 aaKnown RBP20.68■□□□□ 0.9
ZIC4-215ENST00000493664 ERICH3Q5RHP9 1530 aa20.65■□□□□ 0.9
ZIC4-215ENST00000493664 CUX1P39880 1505 aa20.63■□□□□ 0.89
ZIC4-215ENST00000493664 CC2D2AQ9P2K1 1620 aa20.63■□□□□ 0.89
ZIC4-215ENST00000493664 ITGAEP38570 1179 aa20.61■□□□□ 0.89
ZIC4-215ENST00000493664 KIF27Q86VH2 1401 aa20.57■□□□□ 0.88
ZIC4-215ENST00000493664 CLSPNQ9HAW4 1339 aa20.55■□□□□ 0.88
ZIC4-215ENST00000493664 NCAPD3P42695 1498 aa20.55■□□□□ 0.88
ZIC4-215ENST00000493664 RRBP1Q9P2E9 1410 aaKnown RBP20.52■□□□□ 0.87
ZIC4-215ENST00000493664 ARHGAP35Q9NRY4 1499 aa20.51■□□□□ 0.87
ZIC4-215ENST00000493664 HMGXB3Q12766 1538 aa20.48■□□□□ 0.87
ZIC4-215ENST00000493664 CCNB3Q8WWL7 1395 aa20.48■□□□□ 0.87
ZIC4-215ENST00000493664 DNAJC5BQ9UF47 199 aa20.47■□□□□ 0.87
ZIC4-215ENST00000493664 CFTRP13569 1480 aa20.45■□□□□ 0.86
ZIC4-215ENST00000493664 CUX2O14529 1486 aa20.39■□□□□ 0.85
ZIC4-215ENST00000493664 IGF1RP08069 1367 aa20.37■□□□□ 0.85
ZIC4-215ENST00000493664 RAB3GAP2Q9H2M9 1393 aa20.37■□□□□ 0.85
ZIC4-215ENST00000493664 P3H3Q8IVL6 736 aa20.33■□□□□ 0.84
ZIC4-215ENST00000493664 KCNH8Q96L42 1107 aa20.32■□□□□ 0.84
ZIC4-215ENST00000493664 SUPT16HQ9Y5B9 1047 aaKnown RBP20.31■□□□□ 0.84
ZIC4-215ENST00000493664 ATP1B4Q9UN42 357 aaPredicted RBP20.3■□□□□ 0.84
ZIC4-215ENST00000493664 CARMIL1Q5VZK9 1371 aa20.29■□□□□ 0.84
ZIC4-215ENST00000493664 FAM50AQ14320 339 aaKnown RBP20.29■□□□□ 0.84
ZIC4-215ENST00000493664 MAPKBP1O60336 1514 aa20.28■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 86.5 ms