RNA–Protein interactions for RNA: ENST00000489357.5

VTI1A-207, Transcript of vesicle transport through interaction with t-SNAREs 1A, humanhuman

TSL 3

Gene VTI1A, Length 444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1A-207ENST00000489357 AEBP2Q6ZN18 517 aaPredicted RBP23.15■■□□□ 1.3
VTI1A-207ENST00000489357 CHIC1Q5VXU3 224 aa22.72■■□□□ 1.23
VTI1A-207ENST00000489357 PHF23Q9BUL5 403 aaPredicted RBP19.99■□□□□ 0.79
VTI1A-207ENST00000489357 SENP3Q9H4L4 574 aaPredicted RBP19.65■□□□□ 0.74
VTI1A-207ENST00000489357 NISCHQ9Y2I1 1504 aa19.18■□□□□ 0.66
VTI1A-207ENST00000489357 PLPPR3Q6T4P5 718 aa18.51■□□□□ 0.55
VTI1A-207ENST00000489357 FOXD1Q16676 465 aa18.21■□□□□ 0.51
VTI1A-207ENST00000489357 ADRA2BP18089 450 aa17.6■□□□□ 0.41
VTI1A-207ENST00000489357 PPP6R1Q9UPN7 881 aa17.6■□□□□ 0.41
VTI1A-207ENST00000489357 PIAS4Q8N2W9 510 aaPredicted RBP17.21■□□□□ 0.35
VTI1A-207ENST00000489357 CCDC180Q9P1Z9 1646 aa17.03■□□□□ 0.32
VTI1A-207ENST00000489357 MSH5O43196 834 aa16.77■□□□□ 0.28
VTI1A-207ENST00000489357 ABCC9O60706 1549 aa16.56■□□□□ 0.24
VTI1A-207ENST00000489357 PPP4R3CPQ6ZMV5 832 aa16.31■□□□□ 0.2
VTI1A-207ENST00000489357 SCAF1Q9H7N4 1312 aaKnown RBP16.14■□□□□ 0.17
VTI1A-207ENST00000489357 KCNA4P22459 653 aa16.04■□□□□ 0.16
VTI1A-207ENST00000489357 MYO15BQ96JP2 1530 aa15.99■□□□□ 0.15
VTI1A-207ENST00000489357 ZCCHC6Q5VYS8 1495 aaKnown RBP15.98■□□□□ 0.15
VTI1A-207ENST00000489357 NACADO15069 1562 aa15.98■□□□□ 0.15
VTI1A-207ENST00000489357 NCBP3Q53F19 620 aaKnown RBP15.94■□□□□ 0.14
VTI1A-207ENST00000489357 RB1CC1Q8TDY2 1594 aa15.94■□□□□ 0.14
VTI1A-207ENST00000489357 MAPK8IP2Q13387 824 aaPredicted RBP15.93■□□□□ 0.14
VTI1A-207ENST00000489357 DCAF1Q9Y4B6 1507 aa15.93■□□□□ 0.14
VTI1A-207ENST00000489357 CNKSR2Q8WXI2 1034 aa15.85■□□□□ 0.13
VTI1A-207ENST00000489357 DCAF8L2P0C7V8 631 aa15.82■□□□□ 0.12
VTI1A-207ENST00000489357 DMRT2Q9Y5R5 561 aa15.7■□□□□ 0.1
VTI1A-207ENST00000489357 NPM3O75607 178 aaKnown RBP15.68■□□□□ 0.1
VTI1A-207ENST00000489357 UNC13AQ9UPW8 1703 aa15.65■□□□□ 0.1
VTI1A-207ENST00000489357 BICRAQ9NZM4 1560 aa15.53■□□□□ 0.08
VTI1A-207ENST00000489357 RNF216Q9NWF9 866 aaPredicted RBP15.51■□□□□ 0.07
VTI1A-207ENST00000489357 PABPN1Q86U42 306 aaKnown RBP eCLIP15.45■□□□□ 0.06
VTI1A-207ENST00000489357 SCRIBQ14160 1630 aa15.44■□□□□ 0.06
VTI1A-207ENST00000489357 HOXD11P31277 338 aaPredicted RBP15.41■□□□□ 0.06
VTI1A-207ENST00000489357 SHROOM4Q9ULL8 1493 aa15.35■□□□□ 0.05
VTI1A-207ENST00000489357 SLC4A1APQ9BWU0 796 aaKnown RBP15.32■□□□□ 0.04
VTI1A-207ENST00000489357 DNAJC5BQ9UF47 199 aa15.31■□□□□ 0.04
VTI1A-207ENST00000489357 POTEDQ86YR6 584 aa15.07■□□□□ 0
VTI1A-207ENST00000489357 EIF4G1Q04637 1599 aaKnown RBP15.05■□□□□ -0
VTI1A-207ENST00000489357 DCAF8L1A6NGE4 600 aa15.03■□□□□ -0
VTI1A-207ENST00000489357 EHMT2Q96KQ7 1210 aa14.98□□□□□ -0.01
VTI1A-207ENST00000489357 CC2D2AQ9P2K1 1620 aa14.97□□□□□ -0.01
VTI1A-207ENST00000489357 CECR2Q9BXF3 1484 aa14.92□□□□□ -0.02
VTI1A-207ENST00000489357 SMARCA4P51532 1647 aa14.84□□□□□ -0.03
VTI1A-207ENST00000489357 BAZ1AQ9NRL2 1556 aaPredicted RBP14.82□□□□□ -0.04
VTI1A-207ENST00000489357 SLC4A2P04920 1241 aa14.78□□□□□ -0.04
VTI1A-207ENST00000489357 NCAPD3P42695 1498 aa14.77□□□□□ -0.04
VTI1A-207ENST00000489357 MROH2BQ7Z745 1585 aa14.77□□□□□ -0.05
VTI1A-207ENST00000489357 PEG3Q9GZU2 1588 aa14.77□□□□□ -0.05
VTI1A-207ENST00000489357 CSRNP3Q8WYN3 585 aa14.76□□□□□ -0.05
VTI1A-207ENST00000489357 FOXD4L1Q9NU39 408 aa14.76□□□□□ -0.05
VTI1A-207ENST00000489357 ATAD2BQ9ULI0 1458 aa14.76□□□□□ -0.05
VTI1A-207ENST00000489357 ZBTB22O15209 634 aa14.75□□□□□ -0.05
VTI1A-207ENST00000489357 SMARCA2P51531 1590 aa14.72□□□□□ -0.05
VTI1A-207ENST00000489357 GRWD1Q9BQ67 446 aaKnown RBP eCLIP14.71□□□□□ -0.055e-7■■■□□ 19.2
VTI1A-207ENST00000489357 HMGXB3Q12766 1538 aa14.67□□□□□ -0.06
VTI1A-207ENST00000489357 RSF1Q96T23 1441 aaPredicted RBP14.64□□□□□ -0.07
VTI1A-207ENST00000489357 WIZO95785 1651 aa14.6□□□□□ -0.07
VTI1A-207ENST00000489357 BAZ1BQ9UIG0 1483 aaKnown RBP14.57□□□□□ -0.08
VTI1A-207ENST00000489357 SUPT5HO00267 1087 aaKnown RBP14.56□□□□□ -0.08
VTI1A-207ENST00000489357 MYCNP04198 464 aaPredicted RBP14.49□□□□□ -0.09
VTI1A-207ENST00000489357 U3KPZ7 1027 aaPredicted RBP14.46□□□□□ -0.09
VTI1A-207ENST00000489357 TOP2AP11388 1531 aaKnown RBP14.44□□□□□ -0.1
VTI1A-207ENST00000489357 RNF39Q9H2S5 420 aa14.37□□□□□ -0.11
VTI1A-207ENST00000489357 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.34□□□□□ -0.11
VTI1A-207ENST00000489357 HNRNPUL2Q1KMD3 747 aaKnown RBP14.34□□□□□ -0.11
VTI1A-207ENST00000489357 LAMC3Q9Y6N6 1575 aa14.33□□□□□ -0.12
VTI1A-207ENST00000489357 NESP48681 1621 aa14.33□□□□□ -0.12
VTI1A-207ENST00000489357 CADPSQ9ULU8 1353 aa14.31□□□□□ -0.12
VTI1A-207ENST00000489357 SAMD1Q6SPF0 538 aaPredicted RBP14.29□□□□□ -0.12
VTI1A-207ENST00000489357 CCDC88BA6NC98 1476 aa14.29□□□□□ -0.12
VTI1A-207ENST00000489357 CFTRP13569 1480 aa14.26□□□□□ -0.13
VTI1A-207ENST00000489357 ERCC6Q03468 1493 aa14.25□□□□□ -0.13
VTI1A-207ENST00000489357 ATXN8OSP0DMR3 200 aa14.24□□□□□ -0.13
VTI1A-207ENST00000489357 C1QBPQ07021 282 aaKnown RBP14.22□□□□□ -0.13
VTI1A-207ENST00000489357 PDS5BQ9NTI5 1447 aa14.2□□□□□ -0.14
VTI1A-207ENST00000489357 APLP2Q06481 763 aa14.18□□□□□ -0.14
VTI1A-207ENST00000489357 KIF21AQ7Z4S6 1674 aa14.17□□□□□ -0.14
VTI1A-207ENST00000489357 PRDM2Q13029 1718 aa14.16□□□□□ -0.14
VTI1A-207ENST00000489357 CUX2O14529 1486 aa14.14□□□□□ -0.15
VTI1A-207ENST00000489357 THOC2Q8NI27 1593 aaKnown RBP14.12□□□□□ -0.15
VTI1A-207ENST00000489357 FANCD2Q9BXW9 1451 aa14.11□□□□□ -0.15
VTI1A-207ENST00000489357 ATF5Q9Y2D1 282 aaPredicted RBP14.08□□□□□ -0.16
VTI1A-207ENST00000489357 CEP164Q9UPV0 1460 aa14.06□□□□□ -0.16
VTI1A-207ENST00000489357 MRC2Q9UBG0 1479 aa14.05□□□□□ -0.16
VTI1A-207ENST00000489357 WDR62O43379 1518 aa14.03□□□□□ -0.16
VTI1A-207ENST00000489357 SPINK5Q9NQ38 1064 aaPredicted RBP14.02□□□□□ -0.17
VTI1A-207ENST00000489357 URB2Q14146 1524 aaKnown RBP13.99□□□□□ -0.17
VTI1A-207ENST00000489357 CAPN15O75808 1086 aa13.98□□□□□ -0.17
VTI1A-207ENST00000489357 TRHP20396 242 aaPredicted RBP13.94□□□□□ -0.18
VTI1A-207ENST00000489357 CACNB1Q02641 598 aaPredicted RBP13.94□□□□□ -0.18
VTI1A-207ENST00000489357 ZNF219Q9P2Y4 722 aaPredicted RBP13.94□□□□□ -0.18
VTI1A-207ENST00000489357 ABCC8Q09428 1581 aa13.92□□□□□ -0.18
VTI1A-207ENST00000489357 TOPBP1Q92547 1522 aa13.91□□□□□ -0.18
VTI1A-207ENST00000489357 DNMBPQ6XZF7 1577 aa13.9□□□□□ -0.18
VTI1A-207ENST00000489357 CUX1P39880 1505 aa13.85□□□□□ -0.19
VTI1A-207ENST00000489357 DNAJC5Q9H3Z4 198 aa13.83□□□□□ -0.2
VTI1A-207ENST00000489357 POLA1P09884 1462 aaPredicted RBP13.8□□□□□ -0.2
VTI1A-207ENST00000489357 IFT140Q96RY7 1462 aa13.79□□□□□ -0.2
VTI1A-207ENST00000489357 TARBP1Q13395 1621 aaKnown RBP13.79□□□□□ -0.2
VTI1A-207ENST00000489357 TRIM41Q8WV44 630 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms