RNA–Protein interactions for RNA: ENST00000488625.6

ZEB1-206, Transcript of zinc finger E-box binding homeobox 1, humanhuman

TSL 1 (best)

Gene ZEB1, Length 6,026 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZEB1-206ENST00000488625 NISCHQ9Y2I1 1504 aa18.01■□□□□ 0.47
ZEB1-206ENST00000488625 DCAF8L2P0C7V8 631 aa16.81■□□□□ 0.28
ZEB1-206ENST00000488625 SHROOM4Q9ULL8 1493 aa16.58■□□□□ 0.25
ZEB1-206ENST00000488625 SUPT5HO00267 1087 aaKnown RBP16.57■□□□□ 0.24
ZEB1-206ENST00000488625 PCGF6Q9BYE7 350 aa15.72■□□□□ 0.11
ZEB1-206ENST00000488625 EHMT2Q96KQ7 1210 aa15.71■□□□□ 0.11
ZEB1-206ENST00000488625 FAM9AQ8IZU1 332 aaPredicted RBP15.49■□□□□ 0.07
ZEB1-206ENST00000488625 TRIM41Q8WV44 630 aa15.37■□□□□ 0.05
ZEB1-206ENST00000488625 HRCP23327 699 aa15.35■□□□□ 0.05
ZEB1-206ENST00000488625 CHIC1Q5VXU3 224 aa15.35■□□□□ 0.05
ZEB1-206ENST00000488625 ZEB1P37275 1124 aaPredicted RBP15.31■□□□□ 0.04
ZEB1-206ENST00000488625 TTBK1Q5TCY1 1321 aaPredicted RBP15.23■□□□□ 0.03
ZEB1-206ENST00000488625 TRIM26Q12899 539 aaPredicted RBP15.21■□□□□ 0.02
ZEB1-206ENST00000488625 LOC105371045A0A1W2PR82 267 aa15.19■□□□□ 0.02
ZEB1-206ENST00000488625 ZCCHC6Q5VYS8 1495 aaKnown RBP15.11■□□□□ 0.01
ZEB1-206ENST00000488625 APLP2Q06481 763 aa15.11■□□□□ 0.01
ZEB1-206ENST00000488625 CCER1Q8TC90 406 aaPredicted RBP15.1■□□□□ 0.01
ZEB1-206ENST00000488625 PPARGC1BQ86YN6 1023 aaKnown RBP15.08■□□□□ 0
ZEB1-206ENST00000488625 CCDC180Q9P1Z9 1646 aa15.06■□□□□ 0
ZEB1-206ENST00000488625 ABCC9O60706 1549 aa15.01□□□□□ -0.01
ZEB1-206ENST00000488625 CENPBP07199 599 aaPredicted RBP14.96□□□□□ -0.01
ZEB1-206ENST00000488625 UBTFP17480 764 aaKnown RBP14.92□□□□□ -0.02
ZEB1-206ENST00000488625 RANGAP1P46060 587 aaPredicted RBP14.91□□□□□ -0.02
ZEB1-206ENST00000488625 PELP1Q8IZL8 1130 aaKnown RBP14.91□□□□□ -0.02
ZEB1-206ENST00000488625 MYO15BQ96JP2 1530 aa14.82□□□□□ -0.04
ZEB1-206ENST00000488625 YTHDC1Q96MU7 727 aaKnown RBP14.76□□□□□ -0.05
ZEB1-206ENST00000488625 DCAF1Q9Y4B6 1507 aa14.76□□□□□ -0.05
ZEB1-206ENST00000488625 SCRIBQ14160 1630 aa14.76□□□□□ -0.05
ZEB1-206ENST00000488625 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP14.68□□□□□ -0.06
ZEB1-206ENST00000488625 ATP1B4Q9UN42 357 aaPredicted RBP14.56□□□□□ -0.08
ZEB1-206ENST00000488625 HNRNPUL2Q1KMD3 747 aaKnown RBP14.55□□□□□ -0.08
ZEB1-206ENST00000488625 DIEXFQ68CQ4 756 aaKnown RBP14.54□□□□□ -0.08
ZEB1-206ENST00000488625 PABPN1Q86U42 306 aaKnown RBP eCLIP14.54□□□□□ -0.08
ZEB1-206ENST00000488625 RB1CC1Q8TDY2 1594 aa14.45□□□□□ -0.1
ZEB1-206ENST00000488625 MYT1Q01538 1121 aa14.44□□□□□ -0.1
ZEB1-206ENST00000488625 ITGAEP38570 1179 aa14.4□□□□□ -0.1
ZEB1-206ENST00000488625 RSF1Q96T23 1441 aaPredicted RBP14.38□□□□□ -0.11
ZEB1-206ENST00000488625 NEFLP07196 543 aa14.34□□□□□ -0.11
ZEB1-206ENST00000488625 GTF3C3Q9Y5Q9 886 aa14.33□□□□□ -0.11
ZEB1-206ENST00000488625 ERICH6Q7L0X2 663 aa14.31□□□□□ -0.12
ZEB1-206ENST00000488625 NACADO15069 1562 aa14.3□□□□□ -0.12
ZEB1-206ENST00000488625 ACIN1Q9UKV3 1341 aaKnown RBP14.28□□□□□ -0.12
ZEB1-206ENST00000488625 ZNF316A6NFI3 1004 aaPredicted RBP14.28□□□□□ -0.12
ZEB1-206ENST00000488625 CSRNP3Q8WYN3 585 aa14.26□□□□□ -0.13
ZEB1-206ENST00000488625 SCAF1Q9H7N4 1312 aaKnown RBP14.15□□□□□ -0.14
ZEB1-206ENST00000488625 FAM50AQ14320 339 aaKnown RBP14.13□□□□□ -0.15
ZEB1-206ENST00000488625 MYT1LQ9UL68 1186 aa14.08□□□□□ -0.16
ZEB1-206ENST00000488625 CEP162Q5TB80 1403 aa14.08□□□□□ -0.16
ZEB1-206ENST00000488625 CECR2Q9BXF3 1484 aa14.07□□□□□ -0.16
ZEB1-206ENST00000488625 NEUROD1Q13562 356 aa14.07□□□□□ -0.16
ZEB1-206ENST00000488625 GOLGA3Q08378 1498 aa14.03□□□□□ -0.16
ZEB1-206ENST00000488625 BAZ1AQ9NRL2 1556 aaPredicted RBP14.02□□□□□ -0.17
ZEB1-206ENST00000488625 MROH2BQ7Z745 1585 aa14.01□□□□□ -0.17
ZEB1-206ENST00000488625 EEA1Q15075 1411 aa13.99□□□□□ -0.17
ZEB1-206ENST00000488625 WIZO95785 1651 aa13.98□□□□□ -0.17
ZEB1-206ENST00000488625 BCANQ96GW7 911 aa13.97□□□□□ -0.17
ZEB1-206ENST00000488625 CLIP1P30622 1438 aa13.97□□□□□ -0.17
ZEB1-206ENST00000488625 TNIKQ9UKE5 1360 aa13.96□□□□□ -0.18
ZEB1-206ENST00000488625 POLR3GLQ9BT43 218 aa13.95□□□□□ -0.18
ZEB1-206ENST00000488625 ABCC8Q09428 1581 aa13.93□□□□□ -0.18
ZEB1-206ENST00000488625 FBLN2P98095 1184 aa13.93□□□□□ -0.18
ZEB1-206ENST00000488625 ANP32CO43423 234 aa13.91□□□□□ -0.18
ZEB1-206ENST00000488625 WRNQ14191 1432 aaPredicted RBP eCLIP13.91□□□□□ -0.18
ZEB1-206ENST00000488625 P3H3Q8IVL6 736 aa13.9□□□□□ -0.18
ZEB1-206ENST00000488625 MIER1Q8N108 512 aa13.89□□□□□ -0.19
ZEB1-206ENST00000488625 TRIM52Q96A61 297 aa13.89□□□□□ -0.19
ZEB1-206ENST00000488625 CEP164Q9UPV0 1460 aa13.88□□□□□ -0.19
ZEB1-206ENST00000488625 CNGB1Q14028 1251 aaPredicted RBP13.88□□□□□ -0.19
ZEB1-206ENST00000488625 SOGA1O94964 1423 aa13.87□□□□□ -0.19
ZEB1-206ENST00000488625 CCDC88BA6NC98 1476 aa13.86□□□□□ -0.19
ZEB1-206ENST00000488625 TOP2AP11388 1531 aaKnown RBP13.83□□□□□ -0.19
ZEB1-206ENST00000488625 CLSPNQ9HAW4 1339 aa13.83□□□□□ -0.2
ZEB1-206ENST00000488625 BAZ1BQ9UIG0 1483 aaKnown RBP13.83□□□□□ -0.2
ZEB1-206ENST00000488625 NPM1P06748 294 aaKnown RBP eCLIP13.79□□□□□ -0.2
ZEB1-206ENST00000488625 ERCC6Q03468 1493 aa13.74□□□□□ -0.21
ZEB1-206ENST00000488625 FKBP8Q14318 412 aa13.73□□□□□ -0.21
ZEB1-206ENST00000488625 CDK11AQ9UQ88 783 aaPredicted RBP13.73□□□□□ -0.21
ZEB1-206ENST00000488625 DDX10Q13206 875 aaKnown RBP13.72□□□□□ -0.21
ZEB1-206ENST00000488625 TONSLQ96HA7 1378 aa13.71□□□□□ -0.21
ZEB1-206ENST00000488625 SMARCA4P51532 1647 aa13.71□□□□□ -0.22
ZEB1-206ENST00000488625 ARID3CA6NKF2 412 aa13.66□□□□□ -0.22
ZEB1-206ENST00000488625 ZNF326Q5BKZ1 582 aaKnown RBP13.66□□□□□ -0.22
ZEB1-206ENST00000488625 KIF27Q86VH2 1401 aa13.66□□□□□ -0.22
ZEB1-206ENST00000488625 VPS8Q8N3P4 1428 aa13.65□□□□□ -0.22
ZEB1-206ENST00000488625 DAXXQ9UER7 740 aaPredicted RBP13.64□□□□□ -0.23
ZEB1-206ENST00000488625 CHMP7Q8WUX9 453 aaPredicted RBP13.62□□□□□ -0.23
ZEB1-206ENST00000488625 SMARCA2P51531 1590 aa13.61□□□□□ -0.23
ZEB1-206ENST00000488625 HIRIP3Q9BW71 556 aaPredicted RBP13.59□□□□□ -0.23
ZEB1-206ENST00000488625 RUSC2Q8N2Y8 1516 aa13.58□□□□□ -0.24
ZEB1-206ENST00000488625 RTL5Q5HYW3 569 aaPredicted RBP13.58□□□□□ -0.24
ZEB1-206ENST00000488625 ESF1Q9H501 851 aaKnown RBP13.57□□□□□ -0.24
ZEB1-206ENST00000488625 HNRNPUQ00839 825 aaKnown RBP eCLIP13.57□□□□□ -0.24
ZEB1-206ENST00000488625 MTUS2Q5JR59 1369 aa13.55□□□□□ -0.24
ZEB1-206ENST00000488625 CCNB3Q8WWL7 1395 aa13.54□□□□□ -0.24
ZEB1-206ENST00000488625 CHIC2Q9UKJ5 165 aa13.54□□□□□ -0.24
ZEB1-206ENST00000488625 PDS5BQ9NTI5 1447 aa13.53□□□□□ -0.24
ZEB1-206ENST00000488625 ZNF777Q9ULD5 760 aaPredicted RBP13.51□□□□□ -0.25
ZEB1-206ENST00000488625 RAPGEF2Q9Y4G8 1499 aa13.51□□□□□ -0.25
ZEB1-206ENST00000488625 FAM9BQ8IZU0 186 aa13.5□□□□□ -0.25
ZEB1-206ENST00000488625 SUPT16HQ9Y5B9 1047 aaKnown RBP13.5□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms